SNP Links for Gene (Select 55761) - SNP

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Select item 14915663781.

rs1491566378 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 11:43379458 (GRCh38)
11:43401008 (GRCh37)
Canonical SPDI:: NC_000011.10:43379457:AT:
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000108/2 (ALFA)
-=0.00006/8 (GnomAD)
HGVS:: NC_000011.10:g.43379458_43379459del, NC_000011.9:g.43401008_43401009del

Select item 14914260512.

rs1491426051 has merged into rs35337370 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTT>-,TTT,TTTTTTT [Show Flanks]
Chromosome:: 11:43379482 (GRCh38)
11:43401032 (GRCh37)
Canonical SPDI:: NC_000011.10:43379480:TTTTTT:T,NC_000011.10:43379480:TTTTTT:TTTT,NC_000011.10:43379480:TTTTTT:TTTTTTTT
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
TT=0.000004/1 (TOPMED)
-=0.000036/5 (GnomAD)
HGVS:: NC_000011.10:g.43379482_43379486del, NC_000011.10:g.43379485_43379486del, NC_000011.10:g.43379485_43379486dup, NC_000011.9:g.43401032_43401036del, NC_000011.9:g.43401035_43401036del, NC_000011.9:g.43401035_43401036dup

Select item 14914254513.

rs1491425451 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 11:43374765 (GRCh38)
11:43396316 (GRCh37)
Canonical SPDI:: NC_000011.10:43374765::C
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.43374765_43374766insC, NC_000011.9:g.43396315_43396316insC

Select item 14914053624.

rs1491405362 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTTT [Show Flanks]
Chromosome:: 11:43362149 (GRCh38)
11:43383699 (GRCh37)
Canonical SPDI:: NC_000011.10:43362147:TTT:T,NC_000011.10:43362147:TTT:TT,NC_000011.10:43362147:TTT:TTTTT
Gene:: TTC17 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.00001/1 (GnomAD)
HGVS:: NC_000011.10:g.43362149_43362150del, NC_000011.10:g.43362150del, NC_000011.10:g.43362149_43362150dup, NC_000011.9:g.43383699_43383700del, NC_000011.9:g.43383700del, NC_000011.9:g.43383699_43383700dup

Select item 14912492835.

rs1491249283 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 11:43397956 (GRCh38)
11:43419506 (GRCh37)
Canonical SPDI:: NC_000011.10:43397954:TTT:T
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000011.10:g.43397956_43397957del, NC_000011.9:g.43419506_43419507del

Select item 14911387686.

rs1491138768 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 11:43456179 (GRCh38)
11:43477729 (GRCh37)
Canonical SPDI:: NC_000011.10:43456178:AA:
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000018/2 (GnomAD)
HGVS:: NC_000011.10:g.43456179_43456180del, NC_000011.9:g.43477729_43477730del

Select item 14911194557.

rs1491119455 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AT [Show Flanks]
Chromosome:: 11:43362148 (GRCh38)
11:43383699 (GRCh37)
Canonical SPDI:: NC_000011.10:43362148:T:TAT
Gene:: TTC17 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: TA=0./0 (GnomAD)
TA=0.00031/2 (1000Genomes)
HGVS:: NC_000011.10:g.43362149_43362150insAT, NC_000011.9:g.43383699_43383700insAT

Select item 14910404558.

rs1491040455 has merged into rs140936007 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 11:43472853 (GRCh38)
11:43494403 (GRCh37)
Canonical SPDI:: NC_000011.10:43472841:AAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000011.10:43472841:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:43472841:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000011.10:43472841:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:43472841:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000011.10:43472841:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000011.10:43472841:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000011.10:43472841:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:43472841:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000011.10:43472841:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:43472841:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
-=0.0559/280 (1000Genomes)
A=0.25/2 (KOREAN)
A=0.35/14 (GENOME_DK)
HGVS:: NC_000011.10:g.43472853_43472858del, NC_000011.10:g.43472854_43472858del, NC_000011.10:g.43472855_43472858del, NC_000011.10:g.43472856_43472858del, NC_000011.10:g.43472857_43472858del, NC_000011.10:g.43472858del, NC_000011.10:g.43472858dup, NC_000011.10:g.43472857_43472858dup, NC_000011.10:g.43472856_43472858dup, NC_000011.10:g.43472853_43472858dup, NC_000011.10:g.43472851_43472858dup, NC_000011.9:g.43494403_43494408del, NC_000011.9:g.43494404_43494408del, NC_000011.9:g.43494405_43494408del, NC_000011.9:g.43494406_43494408del, NC_000011.9:g.43494407_43494408del, NC_000011.9:g.43494408del, NC_000011.9:g.43494408dup, NC_000011.9:g.43494407_43494408dup, NC_000011.9:g.43494406_43494408dup, NC_000011.9:g.43494403_43494408dup, NC_000011.9:g.43494401_43494408dup

Select item 14910181459.

rs1491018145 has merged into rs10638143 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACACACACACACACACA>-,CA,CACACA,CACACACA,CACACACACA,CACACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA,CACACACACACACACACACACA,CACACACACACACACACACACACA,CACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACACACACACACA [Show Flanks]
Chromosome:: 11:43444734 (GRCh38)
11:43466284 (GRCh37)
Canonical SPDI:: NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000011.10:43444722:ACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACA=0./0 (ALFA)
-=0.375/3 (KOREAN)
AC=0.4986/2497 (1000Genomes)
HGVS:: NC_000011.10:g.43444724CA[5], NC_000011.10:g.43444724CA[6], NC_000011.10:g.43444724CA[8], NC_000011.10:g.43444724CA[9], NC_000011.10:g.43444724CA[10], NC_000011.10:g.43444724CA[11], NC_000011.10:g.43444724CA[12], NC_000011.10:g.43444724CA[13], NC_000011.10:g.43444724CA[14], NC_000011.10:g.43444724CA[15], NC_000011.10:g.43444724CA[16], NC_000011.10:g.43444724CA[17], NC_000011.10:g.43444724CA[19], NC_000011.10:g.43444724CA[20], NC_000011.10:g.43444724CA[21], NC_000011.10:g.43444724CA[22], NC_000011.10:g.43444724CA[23], NC_000011.10:g.43444724CA[24], NC_000011.10:g.43444724CA[25], NC_000011.10:g.43444724CA[26], NC_000011.10:g.43444724CA[27], NC_000011.10:g.43444724CA[30], NC_000011.9:g.43466274CA[5], NC_000011.9:g.43466274CA[6], NC_000011.9:g.43466274CA[8], NC_000011.9:g.43466274CA[9], NC_000011.9:g.43466274CA[10], NC_000011.9:g.43466274CA[11], NC_000011.9:g.43466274CA[12], NC_000011.9:g.43466274CA[13], NC_000011.9:g.43466274CA[14], NC_000011.9:g.43466274CA[15], NC_000011.9:g.43466274CA[16], NC_000011.9:g.43466274CA[17], NC_000011.9:g.43466274CA[19], NC_000011.9:g.43466274CA[20], NC_000011.9:g.43466274CA[21], NC_000011.9:g.43466274CA[22], NC_000011.9:g.43466274CA[23], NC_000011.9:g.43466274CA[24], NC_000011.9:g.43466274CA[25], NC_000011.9:g.43466274CA[26], NC_000011.9:g.43466274CA[27], NC_000011.9:g.43466274CA[30]

Select item 149100073410.

rs1491000734 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:43408240 (GRCh38)
11:43429790 (GRCh37)
Canonical SPDI:: NC_000011.10:43408239:G:T
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000011.10:g.43408240G>T, NC_000011.9:g.43429790G>T

Select item 149099735811.

rs1490997358 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 11:43478615 (GRCh38)
11:43500165 (GRCh37)
Canonical SPDI:: NC_000011.10:43478614:T:C,NC_000011.10:43478614:T:G
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.43478615T>C, NC_000011.10:g.43478615T>G, NC_000011.9:g.43500165T>C, NC_000011.9:g.43500165T>G

Select item 149083255112.

rs1490832551 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:43376661 (GRCh38)
11:43398211 (GRCh37)
Canonical SPDI:: NC_000011.10:43376660:T:C
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.43376661T>C, NC_000011.9:g.43398211T>C

Select item 149083009913.

rs1490830099 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:43431946 (GRCh38)
11:43453496 (GRCh37)
Canonical SPDI:: NC_000011.10:43431945:G:C
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.43431946G>C, NC_000011.9:g.43453496G>C

Select item 149081289014.

rs1490812890 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:43362728 (GRCh38)
11:43384278 (GRCh37)
Canonical SPDI:: NC_000011.10:43362727:G:A
Gene:: TTC17 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.43362728G>A, NC_000011.9:g.43384278G>A

Select item 149077581015.

rs1490775810 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:43485282 (GRCh38)
11:43506832 (GRCh37)
Canonical SPDI:: NC_000011.10:43485281:A:G
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.43485282A>G, NC_000011.9:g.43506832A>G

Select item 149076317516.

rs1490763175 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:43430860 (GRCh38)
11:43452410 (GRCh37)
Canonical SPDI:: NC_000011.10:43430859:A:G
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.43430860A>G, NC_000011.9:g.43452410A>G

Select item 149075230317.

rs1490752303 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:43450501 (GRCh38)
11:43472051 (GRCh37)
Canonical SPDI:: NC_000011.10:43450500:A:G
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.43450501A>G, NC_000011.9:g.43472051A>G

Select item 149074328018.

rs1490743280 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAATA>- [Show Flanks]
Chromosome:: 11:43485622 (GRCh38)
11:43507172 (GRCh37)
Canonical SPDI:: NC_000011.10:43485617:AATAAAATA:AATA
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AATA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.43485622_43485626del, NC_000011.9:g.43507172_43507176del

Select item 149074107619.

rs1490741076 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:43362071 (GRCh38)
11:43383621 (GRCh37)
Canonical SPDI:: NC_000011.10:43362070:C:G
Gene:: TTC17 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.43362071C>G, NC_000011.9:g.43383621C>G

Select item 149071964620.

rs1490719646 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:43470714 (GRCh38)
11:43492264 (GRCh37)
Canonical SPDI:: NC_000011.10:43470713:A:T
Gene:: TTC17 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.43470714A>T, NC_000011.9:g.43492264A>T

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