SNP Links for Gene (Select 55267) - SNP

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Links from Gene

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Select item 14910539041.

rs1491053904 [Homo sapiens]

Variant type:: DEL
Alleles:: GT>- [Show Flanks]
Chromosome:: 22:46054324 (GRCh38)
22:46450204 (GRCh37)
Canonical SPDI:: NC_000022.11:46054323:GT:
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.46054324_46054325del, NC_000022.10:g.46450204_46450205del

Select item 14910402912.

rs1491040291 [Homo sapiens]

Variant type:: INS
Alleles:: ->C,GT [Show Flanks]
Chromosome:: 22:46054324 (GRCh38)
22:46450205 (GRCh37)
Canonical SPDI:: NC_000022.11:46054324::C,NC_000022.11:46054324::GT
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GT=0./0 (ALFA)
HGVS:: NC_000022.11:g.46054324_46054325insC, NC_000022.11:g.46054324_46054325insGT, NC_000022.10:g.46450204_46450205insC, NC_000022.10:g.46450204_46450205insGT

Select item 14896818203.

rs1489681820 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:46055091 (GRCh38)
22:46450971 (GRCh37)
Canonical SPDI:: NC_000022.11:46055090:A:G
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000022.11:g.46055091A>G, NC_000022.10:g.46450971A>G

Select item 14891964964.

rs1489196496 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:46054702 (GRCh38)
22:46450582 (GRCh37)
Canonical SPDI:: NC_000022.11:46054701:C:T
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
HGVS:: NC_000022.11:g.46054702C>T, NC_000022.10:g.46450582C>T

Select item 14889256825.

rs1488925682 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:46054883 (GRCh38)
22:46450763 (GRCh37)
Canonical SPDI:: NC_000022.11:46054882:G:C
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/1 (GnomAD)
HGVS:: NC_000022.11:g.46054883G>C, NC_000022.10:g.46450763G>C

Select item 14888740266.

rs1488874026 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:46053025 (GRCh38)
22:46448905 (GRCh37)
Canonical SPDI:: NC_000022.11:46053024:A:G
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000022.11:g.46053025A>G, NC_000022.10:g.46448905A>G

Select item 14887871187.

rs1488787118 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 22:46054818 (GRCh38)
22:46450698 (GRCh37)
Canonical SPDI:: NC_000022.11:46054817:A:C
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.46054818A>C, NC_000022.10:g.46450698A>C

Select item 14885141408.

rs1488514140 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:46055861 (GRCh38)
22:46451741 (GRCh37)
Canonical SPDI:: NC_000022.11:46055860:C:T
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000022.11:g.46055861C>T, NC_000022.10:g.46451741C>T

Select item 14881718239.

rs1488171823 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 22:46054413 (GRCh38)
22:46450293 (GRCh37)
Canonical SPDI:: NC_000022.11:46054412:GG:G
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
HGVS:: NC_000022.11:g.46054414del, NC_000022.10:g.46450294del

Select item 148771681810.

rs1487716818 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:46053444 (GRCh38)
22:46449324 (GRCh37)
Canonical SPDI:: NC_000022.11:46053443:G:A
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000026/7 (TOPMED)
HGVS:: NC_000022.11:g.46053444G>A, NC_000022.10:g.46449324G>A

Select item 148745822511.

rs1487458225 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G,T [Show Flanks]
Chromosome:: 22:46054272 (GRCh38)
22:46450152 (GRCh37)
Canonical SPDI:: NC_000022.11:46054271:A:C,NC_000022.11:46054271:A:G,NC_000022.11:46054271:A:T
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000004/1 (TOPMED)
T=0.000008/1 (GnomAD)
G=0.000248/4 (TOMMO)
HGVS:: NC_000022.11:g.46054272A>C, NC_000022.11:g.46054272A>G, NC_000022.11:g.46054272A>T, NC_000022.10:g.46450152A>C, NC_000022.10:g.46450152A>G, NC_000022.10:g.46450152A>T

Select item 148733484012.

rs1487334840 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 22:46053894 (GRCh38)
22:46449774 (GRCh37)
Canonical SPDI:: NC_000022.11:46053893:C:A,NC_000022.11:46053893:C:T
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.46053894C>A, NC_000022.11:g.46053894C>T, NC_000022.10:g.46449774C>A, NC_000022.10:g.46449774C>T, NM_018280.2:c.200G>T, NM_018280.2:c.200G>A, NR_165243.1:n.332G>T, NR_165243.1:n.332G>A, NR_027034.1:n.49C>A, NR_027034.1:n.49C>T

Select item 148722565913.

rs1487225659 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 22:46050483 (GRCh38)
22:46446363 (GRCh37)
Canonical SPDI:: NC_000022.11:46050482:C:G,NC_000022.11:46050482:C:T
Gene:: PRR34 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.46050483C>G, NC_000022.11:g.46050483C>T, NC_000022.10:g.46446363C>G, NC_000022.10:g.46446363C>T, NM_018280.2:c.*1344G>C, NM_018280.2:c.*1344G>A, NR_165243.1:n.1893G>C, NR_165243.1:n.1893G>A

Select item 148718148514.

rs1487181485 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 22:46051468 (GRCh38)
22:46447348 (GRCh37)
Canonical SPDI:: NC_000022.11:46051467:G:A,NC_000022.11:46051467:G:T
Gene:: PRR34 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.46051468G>A, NC_000022.11:g.46051468G>T, NC_000022.10:g.46447348G>A, NC_000022.10:g.46447348G>T, NM_018280.2:c.*359C>T, NM_018280.2:c.*359C>A, NR_165243.1:n.908C>T, NR_165243.1:n.908C>A

Select item 148679697415.

rs1486796974 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 22:46054841 (GRCh38)
22:46450721 (GRCh37)
Canonical SPDI:: NC_000022.11:46054840:T:A
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
HGVS:: NC_000022.11:g.46054841T>A, NC_000022.10:g.46450721T>A

Select item 148673503516.

rs1486735035 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:46053987 (GRCh38)
22:46449867 (GRCh37)
Canonical SPDI:: NC_000022.11:46053986:G:T
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000022.11:g.46053987G>T, NC_000022.10:g.46449867G>T, NM_018280.2:c.107C>A, NR_165243.1:n.239C>A

Select item 148635138617.

rs1486351386 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:46050827 (GRCh38)
22:46446707 (GRCh37)
Canonical SPDI:: NC_000022.11:46050826:G:A
Gene:: PRR34 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000022.11:g.46050827G>A, NC_000022.10:g.46446707G>A, NM_018280.2:c.*1000C>T, NR_165243.1:n.1549C>T

Select item 148573411318.

rs1485734113 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:46050699 (GRCh38)
22:46446579 (GRCh37)
Canonical SPDI:: NC_000022.11:46050698:C:T
Gene:: PRR34 (Varview), LOC124905135 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.46050699C>T, NC_000022.10:g.46446579C>T, NM_018280.2:c.*1128G>A, NR_165243.1:n.1677G>A

Select item 148560614519.

rs1485606145 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:46054611 (GRCh38)
22:46450491 (GRCh37)
Canonical SPDI:: NC_000022.11:46054610:C:T
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000021/3 (GnomAD)
T=0.000425/7 (TOMMO)
HGVS:: NC_000022.11:g.46054611C>T, NC_000022.10:g.46450491C>T

Select item 148499376220.

rs1484993762 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 22:46053651 (GRCh38)
22:46449531 (GRCh37)
Canonical SPDI:: NC_000022.11:46053650:GGGG:GGG
Gene:: PRR34 (Varview), PRR34-AS1 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGG=0.000071/1 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.46053654del, NC_000022.10:g.46449534del