SNP Links for Gene (Select 55249) - SNP

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Select item 14915802791.

rs1491580279 has merged into rs1346595768 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAAA [Show Flanks]
Chromosome:: 1:155661516 (GRCh38)
1:155631307 (GRCh37)
Canonical SPDI:: NC_000001.11:155661514:AAA:A,NC_000001.11:155661514:AAA:AA,NC_000001.11:155661514:AAA:AAAAA
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAA=0./0 (ALFA)
-=0.00004/3 (GnomAD)
-=0.04423/164 (TWINSUK)
-=0.04748/183 (ALSPAC)
HGVS:: NC_000001.11:g.155661516_155661517del, NC_000001.11:g.155661517del, NC_000001.11:g.155661516_155661517dup, NC_000001.10:g.155631307_155631308del, NC_000001.10:g.155631308del, NC_000001.10:g.155631307_155631308dup

Select item 14915583322.

rs1491558332 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 1:155665784 (GRCh38)
1:155635575 (GRCh37)
Canonical SPDI:: NC_000001.11:155665783:CA:
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00059/7 (ALFA)
HGVS:: NC_000001.11:g.155665784_155665785del, NC_000001.10:g.155635575_155635576del

Select item 14914966243.

rs1491496624 [Homo sapiens]

Variant type:: INS
Alleles:: ->C,G [Show Flanks]
Chromosome:: 1:155667952 (GRCh38)
1:155637744 (GRCh37)
Canonical SPDI:: NC_000001.11:155667952::C,NC_000001.11:155667952::G
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: G=0.000035/1 (TOMMO)
C=0.000096/13 (GnomAD)
HGVS:: NC_000001.11:g.155667952_155667953insC, NC_000001.11:g.155667952_155667953insG, NC_000001.10:g.155637743_155637744insC, NC_000001.10:g.155637743_155637744insG

Select item 14914951344.

rs1491495134 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 1:155667512 (GRCh38)
1:155637304 (GRCh37)
Canonical SPDI:: NC_000001.11:155667512::G
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.155667512_155667513insG, NC_000001.10:g.155637303_155637304insG

Select item 14914599505.

rs1491459950 has merged into rs58155011 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 1:155665795 (GRCh38)
1:155635586 (GRCh37)
Canonical SPDI:: NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000001.11:155665784:AAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000001.11:g.155665795_155665809del, NC_000001.11:g.155665796_155665809del, NC_000001.11:g.155665797_155665809del, NC_000001.11:g.155665798_155665809del, NC_000001.11:g.155665799_155665809del, NC_000001.11:g.155665802_155665809del, NC_000001.11:g.155665803_155665809del, NC_000001.11:g.155665804_155665809del, NC_000001.11:g.155665805_155665809del, NC_000001.11:g.155665806_155665809del, NC_000001.11:g.155665807_155665809del, NC_000001.11:g.155665808_155665809del, NC_000001.11:g.155665809del, NC_000001.11:g.155665809dup, NC_000001.11:g.155665808_155665809dup, NC_000001.11:g.155665807_155665809dup, NC_000001.11:g.155665806_155665809dup, NC_000001.11:g.155665805_155665809dup, NC_000001.11:g.155665804_155665809dup, NC_000001.11:g.155665803_155665809dup, NC_000001.11:g.155665800_155665809dup, NC_000001.10:g.155635586_155635600del, NC_000001.10:g.155635587_155635600del, NC_000001.10:g.155635588_155635600del, NC_000001.10:g.155635589_155635600del, NC_000001.10:g.155635590_155635600del, NC_000001.10:g.155635593_155635600del, NC_000001.10:g.155635594_155635600del, NC_000001.10:g.155635595_155635600del, NC_000001.10:g.155635596_155635600del, NC_000001.10:g.155635597_155635600del, NC_000001.10:g.155635598_155635600del, NC_000001.10:g.155635599_155635600del, NC_000001.10:g.155635600del, NC_000001.10:g.155635600dup, NC_000001.10:g.155635599_155635600dup, NC_000001.10:g.155635598_155635600dup, NC_000001.10:g.155635597_155635600dup, NC_000001.10:g.155635596_155635600dup, NC_000001.10:g.155635595_155635600dup, NC_000001.10:g.155635594_155635600dup, NC_000001.10:g.155635591_155635600dup

Select item 14914492786.

rs1491449278 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>- [Show Flanks]
Chromosome:: 1:155667953 (GRCh38)
1:155637744 (GRCh37)
Canonical SPDI:: NC_000001.11:155667951:AAA:A
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000084/1 (ALFA)
-=0.000035/1 (TOMMO)
-=0.000186/25 (GnomAD)
HGVS:: NC_000001.11:g.155667953_155667954del, NC_000001.10:g.155637744_155637745del

Select item 14913706127.

rs1491370612 [Homo sapiens]

Variant type:: DEL
Alleles:: GA>- [Show Flanks]
Chromosome:: 1:155662166 (GRCh38)
1:155631957 (GRCh37)
Canonical SPDI:: NC_000001.11:155662165:GA:
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000285/4 (ALFA)
-=0.000197/26 (GnomAD)
-=0.000238/63 (TOPMED)
HGVS:: NC_000001.11:g.155662166_155662167del, NC_000001.10:g.155631957_155631958del

Select item 14913520998.

rs1491352099 has merged into rs1346595768 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAAA [Show Flanks]
Chromosome:: 1:155661516 (GRCh38)
1:155631307 (GRCh37)
Canonical SPDI:: NC_000001.11:155661514:AAA:A,NC_000001.11:155661514:AAA:AA,NC_000001.11:155661514:AAA:AAAAA
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAA=0./0 (ALFA)
-=0.00004/3 (GnomAD)
-=0.04423/164 (TWINSUK)
-=0.04748/183 (ALSPAC)
HGVS:: NC_000001.11:g.155661516_155661517del, NC_000001.11:g.155661517del, NC_000001.11:g.155661516_155661517dup, NC_000001.10:g.155631307_155631308del, NC_000001.10:g.155631308del, NC_000001.10:g.155631307_155631308dup

Select item 14913201959.

rs1491320195 has merged into rs35423534 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAAAA [Show Flanks]
Chromosome:: 1:155680195 (GRCh38)
1:155649986 (GRCh37)
Canonical SPDI:: NC_000001.11:155680181:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000001.11:155680181:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:155680181:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000001.11:155680181:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000001.11:155680181:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000001.11:155680181:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000001.11:155680181:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000001.11:155680181:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA
Gene:: YY1AP1 (Varview), SCARNA26A (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
-=0.4629/2318 (1000Genomes)
HGVS:: NC_000001.11:g.155680195_155680198del, NC_000001.11:g.155680196_155680198del, NC_000001.11:g.155680197_155680198del, NC_000001.11:g.155680198del, NC_000001.11:g.155680198dup, NC_000001.11:g.155680197_155680198dup, NC_000001.11:g.155680196_155680198dup, NC_000001.11:g.155680192_155680198dup, NC_000001.10:g.155649986_155649989del, NC_000001.10:g.155649987_155649989del, NC_000001.10:g.155649988_155649989del, NC_000001.10:g.155649989del, NC_000001.10:g.155649989dup, NC_000001.10:g.155649988_155649989dup, NC_000001.10:g.155649987_155649989dup, NC_000001.10:g.155649983_155649989dup

Select item 149121120610.

rs1491211206 [Homo sapiens]

Variant type:: INS
Alleles:: ->C,G [Show Flanks]
Chromosome:: 1:155661515 (GRCh38)
1:155631307 (GRCh37)
Canonical SPDI:: NC_000001.11:155661515::C,NC_000001.11:155661515::G
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: C=0.0036/23 (1000Genomes)
HGVS:: NC_000001.11:g.155661515_155661516insC, NC_000001.11:g.155661515_155661516insG, NC_000001.10:g.155631306_155631307insC, NC_000001.10:g.155631306_155631307insG

Select item 149085855311.

rs1490858553 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:155675883 (GRCh38)
1:155645674 (GRCh37)
Canonical SPDI:: NC_000001.11:155675882:C:T
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.155675883C>T, NC_000001.10:g.155645674C>T

Select item 149082852312.

rs1490828523 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:155673899 (GRCh38)
1:155643690 (GRCh37)
Canonical SPDI:: NC_000001.11:155673898:C:A,NC_000001.11:155673898:C:T
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00046/13 (TOMMO)
HGVS:: NC_000001.11:g.155673899C>A, NC_000001.11:g.155673899C>T, NC_000001.10:g.155643690C>A, NC_000001.10:g.155643690C>T

Select item 149080589813.

rs1490805898 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:155687079 (GRCh38)
1:155656870 (GRCh37)
Canonical SPDI:: NC_000001.11:155687078:T:C
Gene:: DAP3 (Varview), YY1AP1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.155687079T>C, NC_000001.10:g.155656870T>C

Select item 149076945414.

rs1490769454 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:155686145 (GRCh38)
1:155655936 (GRCh37)
Canonical SPDI:: NC_000001.11:155686144:C:T
Gene:: DAP3 (Varview), YY1AP1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.155686145C>T, NC_000001.10:g.155655936C>T

Select item 149064323515.

rs1490643235 has merged into rs1015807318 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 1:155690741 (GRCh38)
1:155660532 (GRCh37)
Canonical SPDI:: NC_000001.11:155690740:TTTTTTTT:TTTTTTT,NC_000001.11:155690740:TTTTTTTT:TTTTTTTTT
Gene:: DAP3 (Varview), YY1AP1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
-=0.000035/1 (TOMMO)
-=0.000064/17 (TOPMED)
HGVS:: NC_000001.11:g.155690748del, NC_000001.11:g.155690748dup, NC_000001.10:g.155660539del, NC_000001.10:g.155660539dup

Select item 149039557916.

rs1490395579 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:155664783 (GRCh38)
1:155634574 (GRCh37)
Canonical SPDI:: NC_000001.11:155664782:T:G
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000026/7 (TOPMED)
G=0.000036/5 (GnomAD)
HGVS:: NC_000001.11:g.155664783T>G, NC_000001.10:g.155634574T>G

Select item 149037729817.

rs1490377298 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:155679396 (GRCh38)
1:155649187 (GRCh37)
Canonical SPDI:: NC_000001.11:155679395:T:C
Gene:: YY1AP1 (Varview), SCARNA26A (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.155679396T>C, NC_000001.10:g.155649187T>C

Select item 149031480018.

rs1490314800 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:155686546 (GRCh38)
1:155656337 (GRCh37)
Canonical SPDI:: NC_000001.11:155686545:C:T
Gene:: DAP3 (Varview), YY1AP1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.155686546C>T, NC_000001.10:g.155656337C>T

Select item 149013735019.

rs1490137350 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTTC [Show Flanks]
Chromosome:: 1:155689529 (GRCh38)
1:155659321 (GRCh37)
Canonical SPDI:: NC_000001.11:155689529:CTTC:CTTCCTTC
Gene:: DAP3 (Varview), YY1AP1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTTCCTTC=0./0 (ALFA)
CTTC=0.000011/3 (TOPMED)
CTTC=0.000021/3 (GnomAD)
CTTC=0.000312/2 (1000Genomes)
HGVS:: NC_000001.11:g.155689530_155689533dup, NC_000001.10:g.155659321_155659324dup

Select item 149009774020.

rs1490097740 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:155671576 (GRCh38)
1:155641367 (GRCh37)
Canonical SPDI:: NC_000001.11:155671575:A:G
Gene:: YY1AP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.155671576A>G, NC_000001.10:g.155641367A>G

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