SNP Links for Gene (Select 54913) - SNP

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Select item 14908091711.

rs1490809171 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:74956026 (GRCh38)
15:75248367 (GRCh37)
Canonical SPDI:: NC_000015.10:74956025:C:A
Gene:: RPP25 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74956026C>A, NC_000015.9:g.75248367C>A, NM_017793.3:c.558G>T, NM_017793.2:c.558G>T

Select item 14907326342.

rs1490732634 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:74956518 (GRCh38)
15:75248859 (GRCh37)
Canonical SPDI:: NC_000015.10:74956517:G:A
Gene:: RPP25 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
HGVS:: NC_000015.10:g.74956518G>A, NC_000015.9:g.75248859G>A, NM_017793.3:c.66C>T, NM_017793.2:c.66C>T

Select item 14904281563.

rs1490428156 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:74957420 (GRCh38)
15:75249761 (GRCh37)
Canonical SPDI:: NC_000015.10:74957419:T:C
Gene:: RPP25 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74957420T>C, NC_000015.9:g.75249761T>C, NM_017793.2:c.-837A>G

Select item 14903557854.

rs1490355785 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:74958349 (GRCh38)
15:75250690 (GRCh37)
Canonical SPDI:: NC_000015.10:74958348:C:T
Gene:: RPP25 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74958349C>T, NC_000015.9:g.75250690C>T

Select item 14901966645.

rs1490196664 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:74957889 (GRCh38)
15:75250230 (GRCh37)
Canonical SPDI:: NC_000015.10:74957888:C:T
Gene:: RPP25 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.74957889C>T, NC_000015.9:g.75250230C>T

Select item 14899158066.

rs1489915806 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:74956267 (GRCh38)
15:75248608 (GRCh37)
Canonical SPDI:: NC_000015.10:74956266:C:T
Gene:: RPP25 (Varview)
Functional Consequence:: stop_gained,coding_sequence_variant
HGVS:: NC_000015.10:g.74956267C>T, NC_000015.9:g.75248608C>T, NM_017793.3:c.317G>A, NM_017793.2:c.317G>A, NP_060263.2:p.Trp106Ter

Select item 14897548507.

rs1489754850 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:74959396 (GRCh38)
15:75251737 (GRCh37)
Canonical SPDI:: NC_000015.10:74959395:C:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74959396C>T, NC_000015.9:g.75251737C>T

Select item 14891412908.

rs1489141290 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 15:74955973 (GRCh38)
15:75248314 (GRCh37)
Canonical SPDI:: NC_000015.10:74955972:A:C,NC_000015.10:74955972:A:G
Gene:: RPP25 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.74955973A>C, NC_000015.10:g.74955973A>G, NC_000015.9:g.75248314A>C, NC_000015.9:g.75248314A>G, NM_017793.3:c.*11T>G, NM_017793.3:c.*11T>C, NM_017793.2:c.*11T>G, NM_017793.2:c.*11T>C

Select item 14886988799.

rs1488698879 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 15:74955978 (GRCh38)
15:75248319 (GRCh37)
Canonical SPDI:: NC_000015.10:74955977:GG:G
Gene:: RPP25 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74955979del, NC_000015.9:g.75248320del, NM_017793.3:c.*6del, NM_017793.2:c.*6del

Select item 148764836810.

rs1487648368 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:74959306 (GRCh38)
15:75251647 (GRCh37)
Canonical SPDI:: NC_000015.10:74959305:C:G
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74959306C>G, NC_000015.9:g.75251647C>G

Select item 148732090011.

rs1487320900 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:74958804 (GRCh38)
15:75251145 (GRCh37)
Canonical SPDI:: NC_000015.10:74958803:C:A
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74958804C>A, NC_000015.9:g.75251145C>A

Select item 148680127312.

rs1486801273 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:74955750 (GRCh38)
15:75248091 (GRCh37)
Canonical SPDI:: NC_000015.10:74955749:C:T
Gene:: RPP25 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.74955750C>T, NC_000015.9:g.75248091C>T, NM_017793.3:c.*234G>A, NM_017793.2:c.*234G>A

Select item 148561743513.

rs1485617435 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:74956169 (GRCh38)
15:75248510 (GRCh37)
Canonical SPDI:: NC_000015.10:74956168:G:A
Gene:: RPP25 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
HGVS:: NC_000015.10:g.74956169G>A, NC_000015.9:g.75248510G>A, NM_017793.3:c.415C>T, NM_017793.2:c.415C>T, NP_060263.2:p.Leu139Phe

Select item 148516480914.

rs1485164809 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:74955249 (GRCh38)
15:75247590 (GRCh37)
Canonical SPDI:: NC_000015.10:74955248:G:A,NC_000015.10:74955248:G:C
Gene:: RPP25 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.74955249G>A, NC_000015.10:g.74955249G>C, NC_000015.9:g.75247590G>A, NC_000015.9:g.75247590G>C, NM_017793.3:c.*735C>T, NM_017793.3:c.*735C>G, NM_017793.2:c.*735C>T, NM_017793.2:c.*735C>G

Select item 148510883315.

rs1485108833 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 15:74956035 (GRCh38)
15:75248376 (GRCh37)
Canonical SPDI:: NC_000015.10:74956034:C:A,NC_000015.10:74956034:C:G
Gene:: RPP25 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.74956035C>A, NC_000015.10:g.74956035C>G, NC_000015.9:g.75248376C>A, NC_000015.9:g.75248376C>G, NM_017793.3:c.549G>T, NM_017793.3:c.549G>C, NM_017793.2:c.549G>T, NM_017793.2:c.549G>C

Select item 148484181616.

rs1484841816 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:74954681 (GRCh38)
15:75247022 (GRCh37)
Canonical SPDI:: NC_000015.10:74954680:G:A
Gene:: RPP25 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.74954681G>A, NC_000015.9:g.75247022G>A, NM_017793.3:c.*1303C>T

Select item 148471534417.

rs1484715344 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:74955917 (GRCh38)
15:75248258 (GRCh37)
Canonical SPDI:: NC_000015.10:74955916:G:A,NC_000015.10:74955916:G:T
Gene:: RPP25 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.74955917G>A, NC_000015.10:g.74955917G>T, NC_000015.9:g.75248258G>A, NC_000015.9:g.75248258G>T, NM_017793.3:c.*67C>T, NM_017793.3:c.*67C>A, NM_017793.2:c.*67C>T, NM_017793.2:c.*67C>A

Select item 148429193718.

rs1484291937 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:74956693 (GRCh38)
15:75249034 (GRCh37)
Canonical SPDI:: NC_000015.10:74956692:G:A
Gene:: RPP25 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.00003/8 (TOPMED)
HGVS:: NC_000015.10:g.74956693G>A, NC_000015.9:g.75249034G>A, NM_017793.3:c.-110C>T, NM_017793.2:c.-110C>T

Select item 148390370919.

rs1483903709 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 15:74956865 (GRCh38)
15:75249207 (GRCh37)
Canonical SPDI:: NC_000015.10:74956865:CCCC:CCCCC
Gene:: RPP25 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CCCCC=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.74956869dup, NC_000015.9:g.75249210dup, NM_017793.2:c.-283dup

Select item 148386872320.

rs1483868723 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:74956822 (GRCh38)
15:75249163 (GRCh37)
Canonical SPDI:: NC_000015.10:74956821:C:T
Gene:: RPP25 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.74956822C>T, NC_000015.9:g.75249163C>T, NM_017793.2:c.-239G>A

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