SNP Links for Gene (Select 54822) - SNP

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Select item 14915891401.

rs1491589140 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:50646110 (GRCh38)
15:50938307 (GRCh37)
Canonical SPDI:: NC_000015.10:50646109:CA:
Gene:: TRPM7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00008/1 (ALFA)
HGVS:: NC_000015.10:g.50646110_50646111del, NC_000015.9:g.50938307_50938308del, NG_021363.2:g.45705_45706del

Select item 14915868612.

rs1491586861 [Homo sapiens]

Variant type:: INS
Alleles:: ->A,AATATATATATATATATATATATATA,ATA,ATAATATATATATATTATATATATGTGTATATA,ATATA,ATATATA,ATATATATA,ATATATATATA,ATATATATATATA,ATATATATATATATA,ATATATATATATATATA,ATATATGTGTATATATATAA,ATATATGTGTATATATATAATATATATA,ATATGTGTA,ATATGTGTATATA,ATATTATATATATA [Show Flanks]
Chromosome:: 15:50679539 (GRCh38)
15:50971737 (GRCh37)
Canonical SPDI:: NC_000015.10:50679539::A,NC_000015.10:50679539::AATATATATATATATATATATATATA,NC_000015.10:50679539::ATA,NC_000015.10:50679539::ATAATATATATATATTATATATATGTGTATATA,NC_000015.10:50679539::ATATA,NC_000015.10:50679539::ATATATA,NC_000015.10:50679539::ATATATATA,NC_000015.10:50679539::ATATATATATA,NC_000015.10:50679539::ATATATATATATA,NC_000015.10:50679539::ATATATATATATATA,NC_000015.10:50679539::ATATATATATATATATA,NC_000015.10:50679539::ATATATGTGTATATATATAA,NC_000015.10:50679539::ATATATGTGTATATATATAATATATATA,NC_000015.10:50679539::ATATGTGTA,NC_000015.10:50679539::ATATGTGTATATA,NC_000015.10:50679539::ATATTATATATATA
Gene:: TRPM7 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATA=0./0 (ALFA)
HGVS:: NC_000015.10:g.50679539_50679540insA, NC_000015.10:g.50679539_50679540insAATATATATATATATATATATATATA, NC_000015.10:g.50679539_50679540insATA, NC_000015.10:g.50679539_50679540insATAATATATATATATTATATATATGTGTATATA, NC_000015.10:g.50679539_50679540insATATA, NC_000015.10:g.50679539_50679540insATATATA, NC_000015.10:g.50679539_50679540insATATATATA, NC_000015.10:g.50679539_50679540insATATATATATA, NC_000015.10:g.50679539_50679540insATATATATATATA, NC_000015.10:g.50679539_50679540insATATATATATATATA, NC_000015.10:g.50679539_50679540insATATATATATATATATA, NC_000015.10:g.50679539_50679540insATATATGTGTATATATATAA, NC_000015.10:g.50679539_50679540insATATATGTGTATATATATAATATATATA, NC_000015.10:g.50679539_50679540insATATGTGTA, NC_000015.10:g.50679539_50679540insATATGTGTATATA, NC_000015.10:g.50679539_50679540insATATTATATATATA, NC_000015.9:g.50971736_50971737insA, NC_000015.9:g.50971736_50971737insAATATATATATATATATATATATATA, NC_000015.9:g.50971736_50971737insATA, NC_000015.9:g.50971736_50971737insATAATATATATATATTATATATATGTGTATATA, NC_000015.9:g.50971736_50971737insATATA, NC_000015.9:g.50971736_50971737insATATATA, NC_000015.9:g.50971736_50971737insATATATATA, NC_000015.9:g.50971736_50971737insATATATATATA, NC_000015.9:g.50971736_50971737insATATATATATATA, NC_000015.9:g.50971736_50971737insATATATATATATATA, NC_000015.9:g.50971736_50971737insATATATATATATATATA, NC_000015.9:g.50971736_50971737insATATATGTGTATATATATAA, NC_000015.9:g.50971736_50971737insATATATGTGTATATATATAATATATATA, NC_000015.9:g.50971736_50971737insATATGTGTA, NC_000015.9:g.50971736_50971737insATATGTGTATATA, NC_000015.9:g.50971736_50971737insATATTATATATATA, NG_021363.2:g.12276_12277insT, NG_021363.2:g.12276_12277insTATATATATATATATATATATATATT, NG_021363.2:g.12276_12277insTAT, NG_021363.2:g.12276_12277insTATATACACATATATATAATATATATATATTAT, NG_021363.2:g.12276_12277insTATAT, NG_021363.2:g.12276_12277insTATATAT, NG_021363.2:g.12276_12277insTATATATAT, NG_021363.2:g.12276_12277insTATATATATAT, NG_021363.2:g.12276_12277insTATATATATATAT, NG_021363.2:g.12276_12277insTATATATATATATAT, NG_021363.2:g.12276_12277insTATATATATATATATAT, NG_021363.2:g.12276_12277insTTATATATATACACATATAT, NG_021363.2:g.12276_12277insTATATATATTATATATATACACATATAT, NG_021363.2:g.12276_12277insTACACATAT, NG_021363.2:g.12276_12277insTATATACACATAT, NG_021363.2:g.12276_12277insTATATATATAATAT

Select item 14915705353.

rs1491570535 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TGA [Show Flanks]
Chromosome:: 15:50564259 (GRCh38)
15:50856457 (GRCh37)
Canonical SPDI:: NC_000015.10:50564259:A:ATGA
Gene:: TRPM7 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: ATGA=0./0 (ALFA)
ATG=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.50564260_50564261insTGA, NC_000015.9:g.50856457_50856458insTGA, NG_021363.2:g.127556_127557insCAT

Select item 14915667874.

rs1491566787 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:50560012 (GRCh38)
15:50852209 (GRCh37)
Canonical SPDI:: NC_000015.10:50560011:CA:
Gene:: TRPM7 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00447/53 (ALFA)
-=0.00046/13 (TOMMO)
HGVS:: NC_000015.10:g.50560012_50560013del, NC_000015.9:g.50852209_50852210del, NG_021363.2:g.131803_131804del, NM_017672.6:c.*1665_*1666del, NM_017672.5:c.*1665_*1666del, NM_017672.4:c.*1665_*1666del, NM_001301212.2:c.*1665_*1666del, NM_001301212.1:c.*1665_*1666del, NR_149152.2:n.7477_7478del, NR_149152.1:n.7495_7496del, NR_149153.2:n.7400_7401del, NR_149153.1:n.7418_7419del, NR_149154.2:n.7327_7328del, NR_149154.1:n.7345_7346del, XM_005254486.5:c.*1665_*1666del, XM_017022353.3:c.*1665_*1666del, XM_017022350.2:c.*1665_*1666del, XM_017022352.2:c.*1665_*1666del, XM_017022355.2:c.*1665_*1666del, XM_047432733.1:c.*1665_*1666del, XM_047432734.1:c.*1665_*1666del, XM_047432735.1:c.*1665_*1666del, XM_047432736.1:c.*1665_*1666del, XM_047432737.1:c.*1665_*1666del

Select item 14915660455.

rs1491566045 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:50621157 (GRCh38)
15:50913354 (GRCh37)
Canonical SPDI:: NC_000015.10:50621156:CA:
Gene:: TRPM7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00059/7 (ALFA)
HGVS:: NC_000015.10:g.50621157_50621158del, NC_000015.9:g.50913354_50913355del, NG_021363.2:g.70658_70659del

Select item 14915630426.

rs1491563042 has merged into rs10553093 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAA>-,A,AA,AAA,AAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA [Show Flanks]
Chromosome:: 15:50678514 (GRCh38)
15:50970711 (GRCh37)
Canonical SPDI:: NC_000015.10:50678506:AAAAAAAAAAAA:AAAAAAA,NC_000015.10:50678506:AAAAAAAAAAAA:AAAAAAAA,NC_000015.10:50678506:AAAAAAAAAAAA:AAAAAAAAA,NC_000015.10:50678506:AAAAAAAAAAAA:AAAAAAAAAA,NC_000015.10:50678506:AAAAAAAAAAAA:AAAAAAAAAAA,NC_000015.10:50678506:AAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:50678506:AAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:50678506:AAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:50678506:AAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:50678506:AAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000015.10:50678506:AAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000015.10:50678506:AAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA
Gene:: TRPM7 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
-=0.07836/302 (ALSPAC)
-=0.28947/11 (GENOME_DK)
-=0.29167/175 (NorthernSweden)
HGVS:: NC_000015.10:g.50678514_50678518del, NC_000015.10:g.50678515_50678518del, NC_000015.10:g.50678516_50678518del, NC_000015.10:g.50678517_50678518del, NC_000015.10:g.50678518del, NC_000015.10:g.50678518dup, NC_000015.10:g.50678517_50678518dup, NC_000015.10:g.50678516_50678518dup, NC_000015.10:g.50678515_50678518dup, NC_000015.10:g.50678514_50678518dup, NC_000015.10:g.50678512_50678518dup, NC_000015.10:g.50678511_50678518dup, NC_000015.9:g.50970711_50970715del, NC_000015.9:g.50970712_50970715del, NC_000015.9:g.50970713_50970715del, NC_000015.9:g.50970714_50970715del, NC_000015.9:g.50970715del, NC_000015.9:g.50970715dup, NC_000015.9:g.50970714_50970715dup, NC_000015.9:g.50970713_50970715dup, NC_000015.9:g.50970712_50970715dup, NC_000015.9:g.50970711_50970715dup, NC_000015.9:g.50970709_50970715dup, NC_000015.9:g.50970708_50970715dup, NG_021363.2:g.13305_13309del, NG_021363.2:g.13306_13309del, NG_021363.2:g.13307_13309del, NG_021363.2:g.13308_13309del, NG_021363.2:g.13309del, NG_021363.2:g.13309dup, NG_021363.2:g.13308_13309dup, NG_021363.2:g.13307_13309dup, NG_021363.2:g.13306_13309dup, NG_021363.2:g.13305_13309dup, NG_021363.2:g.13303_13309dup, NG_021363.2:g.13302_13309dup

Select item 14915628997.

rs1491562899 has merged into rs34097559 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT [Show Flanks]
Chromosome:: 15:50616695 (GRCh38)
15:50908892 (GRCh37)
Canonical SPDI:: NC_000015.10:50616684:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000015.10:50616684:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000015.10:50616684:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000015.10:50616684:TTTTTTTTTTTTT:TTTTTTTTTTTTTT
Gene:: TRPM7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0.0002/1 (ALFA)
HGVS:: NC_000015.10:g.50616695_50616697del, NC_000015.10:g.50616696_50616697del, NC_000015.10:g.50616697del, NC_000015.10:g.50616697dup, NC_000015.9:g.50908892_50908894del, NC_000015.9:g.50908893_50908894del, NC_000015.9:g.50908894del, NC_000015.9:g.50908894dup, NG_021363.2:g.75129_75131del, NG_021363.2:g.75130_75131del, NG_021363.2:g.75131del, NG_021363.2:g.75131dup

Select item 14915594278.

rs1491559427 [Homo sapiens]

Variant type:: INS
Alleles:: ->TA,TAA,TAAA,TAAAA [Show Flanks]
Chromosome:: 15:50570677 (GRCh38)
15:50862875 (GRCh37)
Canonical SPDI:: NC_000015.10:50570677::TA,NC_000015.10:50570677::TAA,NC_000015.10:50570677::TAAA,NC_000015.10:50570677::TAAAA
Gene:: TRPM7 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAA=0./0 (ALFA)
HGVS:: NC_000015.10:g.50570677_50570678insTA, NC_000015.10:g.50570677_50570678insTAA, NC_000015.10:g.50570677_50570678insTAAA, NC_000015.10:g.50570677_50570678insTAAAA, NC_000015.9:g.50862874_50862875insTA, NC_000015.9:g.50862874_50862875insTAA, NC_000015.9:g.50862874_50862875insTAAA, NC_000015.9:g.50862874_50862875insTAAAA, NG_021363.2:g.121138_121139insTA, NG_021363.2:g.121138_121139insTTA, NG_021363.2:g.121138_121139insTTTA, NG_021363.2:g.121138_121139insTTTTA

Select item 14915547989.

rs1491554798 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:50617335 (GRCh38)
15:50909532 (GRCh37)
Canonical SPDI:: NC_000015.10:50617334:CA:
Gene:: TRPM7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000749/8 (ALFA)
-=0.000219/24 (GnomAD)
-=0.005189/20 (ALSPAC)
-=0.007551/28 (TWINSUK)
HGVS:: NC_000015.10:g.50617335_50617336del, NC_000015.9:g.50909532_50909533del, NG_021363.2:g.74480_74481del

Select item 149154805110.

rs1491548051 has merged into rs71127103 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAA>-,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA [Show Flanks]
Chromosome:: 15:50652534 (GRCh38)
15:50944731 (GRCh37)
Canonical SPDI:: NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA
Gene:: TRPM7 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.070317/271 (ALSPAC)
-=0.461462/2311 (1000Genomes)
HGVS:: NC_000015.10:g.50652534_50652542del, NC_000015.10:g.50652538_50652542del, NC_000015.10:g.50652539_50652542del, NC_000015.10:g.50652540_50652542del, NC_000015.10:g.50652541_50652542del, NC_000015.10:g.50652542del, NC_000015.10:g.50652542dup, NC_000015.10:g.50652541_50652542dup, NC_000015.9:g.50944731_50944739del, NC_000015.9:g.50944735_50944739del, NC_000015.9:g.50944736_50944739del, NC_000015.9:g.50944737_50944739del, NC_000015.9:g.50944738_50944739del, NC_000015.9:g.50944739del, NC_000015.9:g.50944739dup, NC_000015.9:g.50944738_50944739dup, NG_021363.2:g.39282_39290del, NG_021363.2:g.39286_39290del, NG_021363.2:g.39287_39290del, NG_021363.2:g.39288_39290del, NG_021363.2:g.39289_39290del, NG_021363.2:g.39290del, NG_021363.2:g.39290dup, NG_021363.2:g.39289_39290dup

Select item 149152266411.

rs1491522664 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>T [Show Flanks]
Chromosome:: 15:50617335 (GRCh38)
15:50909532 (GRCh37)
Canonical SPDI:: NC_000015.10:50617334:CA:T
Gene:: TRPM7 (Varview)
Functional Consequence:: intron_variant
Validated:: by cluster
HGVS:: NC_000015.10:g.50617335_50617336delinsT, NC_000015.9:g.50909532_50909533delinsT, NG_021363.2:g.74480_74481delinsA

Select item 149151354412.

rs1491513544 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 15:50679511 (GRCh38)
15:50971708 (GRCh37)
Canonical SPDI:: NC_000015.10:50679510:AA:
Gene:: TRPM7 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00003/3 (GnomAD)
HGVS:: NC_000015.10:g.50679511_50679512del, NC_000015.9:g.50971708_50971709del, NG_021363.2:g.12304_12305del

Select item 149149584713.

rs1491495847 has merged into rs71127103 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAA>-,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA [Show Flanks]
Chromosome:: 15:50652534 (GRCh38)
15:50944731 (GRCh37)
Canonical SPDI:: NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000015.10:50652525:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA
Gene:: TRPM7 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.070317/271 (ALSPAC)
-=0.461462/2311 (1000Genomes)
HGVS:: NC_000015.10:g.50652534_50652542del, NC_000015.10:g.50652538_50652542del, NC_000015.10:g.50652539_50652542del, NC_000015.10:g.50652540_50652542del, NC_000015.10:g.50652541_50652542del, NC_000015.10:g.50652542del, NC_000015.10:g.50652542dup, NC_000015.10:g.50652541_50652542dup, NC_000015.9:g.50944731_50944739del, NC_000015.9:g.50944735_50944739del, NC_000015.9:g.50944736_50944739del, NC_000015.9:g.50944737_50944739del, NC_000015.9:g.50944738_50944739del, NC_000015.9:g.50944739del, NC_000015.9:g.50944739dup, NC_000015.9:g.50944738_50944739dup, NG_021363.2:g.39282_39290del, NG_021363.2:g.39286_39290del, NG_021363.2:g.39287_39290del, NG_021363.2:g.39288_39290del, NG_021363.2:g.39289_39290del, NG_021363.2:g.39290del, NG_021363.2:g.39290dup, NG_021363.2:g.39289_39290dup

Select item 149146252114.

rs1491462521 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CACA [Show Flanks]
Chromosome:: 15:50679502 (GRCh38)
15:50971700 (GRCh37)
Canonical SPDI:: NC_000015.10:50679502:A:ACACA
Gene:: TRPM7 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: ACAC=0.00003/2 (GnomAD)
HGVS:: NC_000015.10:g.50679503_50679504insCACA, NC_000015.9:g.50971700_50971701insCACA, NG_021363.2:g.12313_12314insGTGT

Select item 149144183815.

rs1491441838 has merged into rs58783893 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTT>-,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 15:50679545 (GRCh38)
15:50971742 (GRCh37)
Canonical SPDI:: NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000015.10:50679538:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: TRPM7 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
HGVS:: NC_000015.10:g.50679545_50679553del, NC_000015.10:g.50679547_50679553del, NC_000015.10:g.50679548_50679553del, NC_000015.10:g.50679549_50679553del, NC_000015.10:g.50679550_50679553del, NC_000015.10:g.50679551_50679553del, NC_000015.10:g.50679552_50679553del, NC_000015.10:g.50679553del, NC_000015.10:g.50679553dup, NC_000015.10:g.50679552_50679553dup, NC_000015.10:g.50679551_50679553dup, NC_000015.10:g.50679550_50679553dup, NC_000015.10:g.50679549_50679553dup, NC_000015.10:g.50679548_50679553dup, NC_000015.10:g.50679547_50679553dup, NC_000015.10:g.50679544_50679553dup, NC_000015.10:g.50679543_50679553dup, NC_000015.10:g.50679542_50679553dup, NC_000015.10:g.50679541_50679553dup, NC_000015.10:g.50679539_50679553dup, NC_000015.10:g.50679553_50679554insTTTTTTTTTTTTTTTTT, NC_000015.10:g.50679553_50679554insTTTTTTTTTTTTTTTTTTT, NC_000015.9:g.50971742_50971750del, NC_000015.9:g.50971744_50971750del, NC_000015.9:g.50971745_50971750del, NC_000015.9:g.50971746_50971750del, NC_000015.9:g.50971747_50971750del, NC_000015.9:g.50971748_50971750del, NC_000015.9:g.50971749_50971750del, NC_000015.9:g.50971750del, NC_000015.9:g.50971750dup, NC_000015.9:g.50971749_50971750dup, NC_000015.9:g.50971748_50971750dup, NC_000015.9:g.50971747_50971750dup, NC_000015.9:g.50971746_50971750dup, NC_000015.9:g.50971745_50971750dup, NC_000015.9:g.50971744_50971750dup, NC_000015.9:g.50971741_50971750dup, NC_000015.9:g.50971740_50971750dup, NC_000015.9:g.50971739_50971750dup, NC_000015.9:g.50971738_50971750dup, NC_000015.9:g.50971736_50971750dup, NC_000015.9:g.50971750_50971751insTTTTTTTTTTTTTTTTT, NC_000015.9:g.50971750_50971751insTTTTTTTTTTTTTTTTTTT, NG_021363.2:g.12269_12277del, NG_021363.2:g.12271_12277del, NG_021363.2:g.12272_12277del, NG_021363.2:g.12273_12277del, NG_021363.2:g.12274_12277del, NG_021363.2:g.12275_12277del, NG_021363.2:g.12276_12277del, NG_021363.2:g.12277del, NG_021363.2:g.12277dup, NG_021363.2:g.12276_12277dup, NG_021363.2:g.12275_12277dup, NG_021363.2:g.12274_12277dup, NG_021363.2:g.12273_12277dup, NG_021363.2:g.12272_12277dup, NG_021363.2:g.12271_12277dup, NG_021363.2:g.12268_12277dup, NG_021363.2:g.12267_12277dup, NG_021363.2:g.12266_12277dup, NG_021363.2:g.12265_12277dup, NG_021363.2:g.12263_12277dup, NG_021363.2:g.12277_12278insAAAAAAAAAAAAAAAAA, NG_021363.2:g.12277_12278insAAAAAAAAAAAAAAAAAAA

Select item 149143711716.

rs1491437117 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 15:50595929 (GRCh38)
15:50888126 (GRCh37)
Canonical SPDI:: NC_000015.10:50595928:AT:
Gene:: TRPM7 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: -=0.0076/28 (TWINSUK)
-=0.0096/37 (ALSPAC)
HGVS:: NC_000015.10:g.50595929_50595930del, NC_000015.9:g.50888126_50888127del, NG_021363.2:g.95886_95887del

Select item 149140635817.

rs1491406358 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 15:50570677 (GRCh38)
15:50862874 (GRCh37)
Canonical SPDI:: NC_000015.10:50570676:TA:
Gene:: TRPM7 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00025/3 (ALFA)
HGVS:: NC_000015.10:g.50570677_50570678del, NC_000015.9:g.50862874_50862875del, NG_021363.2:g.121138_121139del

Select item 149140318418.

rs1491403184 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 15:50613501 (GRCh38)
15:50905698 (GRCh37)
Canonical SPDI:: NC_000015.10:50613500:CA:
Gene:: TRPM7 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00986/117 (ALFA)
HGVS:: NC_000015.10:g.50613501_50613502del, NC_000015.9:g.50905698_50905699del, NG_021363.2:g.78314_78315del

Select item 149137078419.

rs1491370784 has merged into rs71124382 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGG>-,G,GGGG,GGGGG,GGGGGG,GGGGGGG [Show Flanks]
Chromosome:: 15:50590844 (GRCh38)
15:50883041 (GRCh37)
Canonical SPDI:: NC_000015.10:50590841:GGGGG:GG,NC_000015.10:50590841:GGGGG:GGG,NC_000015.10:50590841:GGGGG:GGGGGG,NC_000015.10:50590841:GGGGG:GGGGGGG,NC_000015.10:50590841:GGGGG:GGGGGGGG,NC_000015.10:50590841:GGGGG:GGGGGGGGG
Gene:: TRPM7 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGG=0.000289/4 (ALFA)
-=0.000034/9 (TOPMED)
HGVS:: NC_000015.10:g.50590844_50590846del, NC_000015.10:g.50590845_50590846del, NC_000015.10:g.50590846dup, NC_000015.10:g.50590845_50590846dup, NC_000015.10:g.50590844_50590846dup, NC_000015.10:g.50590843_50590846dup, NC_000015.9:g.50883041_50883043del, NC_000015.9:g.50883042_50883043del, NC_000015.9:g.50883043dup, NC_000015.9:g.50883042_50883043dup, NC_000015.9:g.50883041_50883043dup, NC_000015.9:g.50883040_50883043dup, NG_021363.2:g.100972_100974del, NG_021363.2:g.100973_100974del, NG_021363.2:g.100974dup, NG_021363.2:g.100973_100974dup, NG_021363.2:g.100972_100974dup, NG_021363.2:g.100971_100974dup

Select item 149136935720.

rs1491369357 has merged into rs35356193 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATA>-,TA,TATATA,TATATATA,TATATATATA,TATATATATATA,TATATATATATATA,TATATATATATATATATA,TATATATATATATATATATA [Show Flanks]
Chromosome:: 15:50673647 (GRCh38)
15:50965844 (GRCh37)
Canonical SPDI:: NC_000015.10:50673634:TATATATATATATATA:TATATATATATA,NC_000015.10:50673634:TATATATATATATATA:TATATATATATATA,NC_000015.10:50673634:TATATATATATATATA:TATATATATATATATATA,NC_000015.10:50673634:TATATATATATATATA:TATATATATATATATATATA,NC_000015.10:50673634:TATATATATATATATA:TATATATATATATATATATATA,NC_000015.10:50673634:TATATATATATATATA:TATATATATATATATATATATATA,NC_000015.10:50673634:TATATATATATATATA:TATATATATATATATATATATATATA,NC_000015.10:50673634:TATATATATATATATA:TATATATATATATATATATATATATATATA,NC_000015.10:50673634:TATATATATATATATA:TATATATATATATATATATATATATATATATA
Gene:: TRPM7 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATATATATATATATATATA=0./0 (ALFA)
TA=0.00113/19 (TOMMO)
TA=0.01852/4 (Vietnamese)
TA=0.02/12 (NorthernSweden)
TA=0.05531/277 (1000Genomes)
HGVS:: NC_000015.10:g.50673635TA[6], NC_000015.10:g.50673635TA[7], NC_000015.10:g.50673635TA[9], NC_000015.10:g.50673635TA[10], NC_000015.10:g.50673635TA[11], NC_000015.10:g.50673635TA[12], NC_000015.10:g.50673635TA[13], NC_000015.10:g.50673635TA[15], NC_000015.10:g.50673635TA[16], NC_000015.9:g.50965832TA[6], NC_000015.9:g.50965832TA[7], NC_000015.9:g.50965832TA[9], NC_000015.9:g.50965832TA[10], NC_000015.9:g.50965832TA[11], NC_000015.9:g.50965832TA[12], NC_000015.9:g.50965832TA[13], NC_000015.9:g.50965832TA[15], NC_000015.9:g.50965832TA[16], NG_021363.2:g.18166TA[6], NG_021363.2:g.18166TA[7], NG_021363.2:g.18166TA[9], NG_021363.2:g.18166TA[10], NG_021363.2:g.18166TA[11], NG_021363.2:g.18166TA[12], NG_021363.2:g.18166TA[13], NG_021363.2:g.18166TA[15], NG_021363.2:g.18166TA[16]

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