SNP Links for Gene (Select 54754) - SNP

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Select item 14910717961.

rs1491071796 has merged into rs539317022 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAA>-,AAAAA,AAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 9:94324668 (GRCh38)
9:97086950 (GRCh37)
Canonical SPDI:: NC_000009.12:94324662:AAAAAAAAAAAAAAAA:AAAAA,NC_000009.12:94324662:AAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000009.12:94324662:AAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000009.12:94324662:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000009.12:94324662:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000009.12:94324662:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000009.12:94324662:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000009.12:94324662:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000009.12:94324662:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000009.12:94324662:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA
Gene:: NUTM2F (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.05021/251 (1000Genomes)
HGVS:: NC_000009.12:g.94324668_94324678del, NC_000009.12:g.94324673_94324678del, NC_000009.12:g.94324674_94324678del, NC_000009.12:g.94324676_94324678del, NC_000009.12:g.94324677_94324678del, NC_000009.12:g.94324678del, NC_000009.12:g.94324678dup, NC_000009.12:g.94324677_94324678dup, NC_000009.12:g.94324675_94324678dup, NC_000009.12:g.94324674_94324678dup, NC_000009.11:g.97086950_97086960del, NC_000009.11:g.97086955_97086960del, NC_000009.11:g.97086956_97086960del, NC_000009.11:g.97086958_97086960del, NC_000009.11:g.97086959_97086960del, NC_000009.11:g.97086960del, NC_000009.11:g.97086960dup, NC_000009.11:g.97086959_97086960dup, NC_000009.11:g.97086957_97086960dup, NC_000009.11:g.97086956_97086960dup

Select item 14908703652.

rs1490870365 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:94322065 (GRCh38)
9:97084347 (GRCh37)
Canonical SPDI:: NC_000009.12:94322064:G:A
Gene:: NUTM2F (Varview), LOC105376154 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.94322065G>A, NC_000009.11:g.97084347G>A

Select item 14907608203.

rs1490760820 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAGAAAA>- [Show Flanks]
Chromosome:: 9:94324674 (GRCh38)
9:97086956 (GRCh37)
Canonical SPDI:: NC_000009.12:94324669:AAAAAAAAAGAAAA:AAAA
Gene:: NUTM2F (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AAAA=0.00008/1 (ALFA)
HGVS:: NC_000009.12:g.94324674_94324683del, NC_000009.11:g.97086956_97086965del

Select item 14906336664.

rs1490633666 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 9:94322484 (GRCh38)
9:97084766 (GRCh37)
Canonical SPDI:: NC_000009.12:94322483:A:C,NC_000009.12:94322483:A:T
Gene:: NUTM2F (Varview), LOC105376154 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.00003/8 (TOPMED)
T=0.000043/6 (GnomAD)
C=0.001092/2 (Korea1K)
HGVS:: NC_000009.12:g.94322484A>C, NC_000009.12:g.94322484A>T, NC_000009.11:g.97084766A>C, NC_000009.11:g.97084766A>T

Select item 14905989935.

rs1490598993 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:94324193 (GRCh38)
9:97086475 (GRCh37)
Canonical SPDI:: NC_000009.12:94324192:C:T
Gene:: NUTM2F (Varview), LOC105376154 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00003/8 (TOPMED)
T=0.00005/7 (GnomAD)
HGVS:: NC_000009.12:g.94324193C>T, NC_000009.11:g.97086475C>T

Select item 14904049596.

rs1490404959 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:94329351 (GRCh38)
9:97091633 (GRCh37)
Canonical SPDI:: NC_000009.12:94329350:A:G
Gene:: NUTM2F (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
G=0.000142/2 (TOMMO)
HGVS:: NC_000009.12:g.94329351A>G, NC_000009.11:g.97091633A>G

Select item 14903255977.

rs1490325597 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:94326870 (GRCh38)
9:97089152 (GRCh37)
Canonical SPDI:: NC_000009.12:94326869:C:T
Gene:: NUTM2F (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.94326870C>T, NC_000009.11:g.97089152C>T

Select item 14902532768.

rs1490253276 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:94327690 (GRCh38)
9:97089972 (GRCh37)
Canonical SPDI:: NC_000009.12:94327689:T:G
Gene:: NUTM2F (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
HGVS:: NC_000009.12:g.94327690T>G, NC_000009.11:g.97089972T>G

Select item 14900540349.

rs1490054034 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:94321715 (GRCh38)
9:97083997 (GRCh37)
Canonical SPDI:: NC_000009.12:94321714:G:A
Gene:: NUTM2F (Varview), LOC105376154 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000015/2 (GnomAD)
HGVS:: NC_000009.12:g.94321715G>A, NC_000009.11:g.97083997G>A

Select item 149003913810.

rs1490039138 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:94322451 (GRCh38)
9:97084733 (GRCh37)
Canonical SPDI:: NC_000009.12:94322450:T:C
Gene:: NUTM2F (Varview), LOC105376154 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.94322451T>C, NC_000009.11:g.97084733T>C

Select item 148986894911.

rs1489868949 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:94321305 (GRCh38)
9:97083587 (GRCh37)
Canonical SPDI:: NC_000009.12:94321304:A:G
Gene:: NUTM2F (Varview), LOC105376154 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.94321305A>G, NC_000009.11:g.97083587A>G

Select item 148977002212.

rs1489770022 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 9:94323546 (GRCh38)
9:97085828 (GRCh37)
Canonical SPDI:: NC_000009.12:94323545:C:A,NC_000009.12:94323545:C:G,NC_000009.12:94323545:C:T
Gene:: NUTM2F (Varview), LOC105376154 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.94323546C>A, NC_000009.12:g.94323546C>G, NC_000009.12:g.94323546C>T, NC_000009.11:g.97085828C>A, NC_000009.11:g.97085828C>G, NC_000009.11:g.97085828C>T

Select item 148935163413.

rs1489351634 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:94318765 (GRCh38)
9:97081047 (GRCh37)
Canonical SPDI:: NC_000009.12:94318764:G:C
Gene:: NUTM2F (Varview), LOC105376154 (Varview)
Functional Consequence:: coding_sequence_variant,intron_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000006/1 (GnomAD_exomes)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.94318765G>C, NC_000009.11:g.97081047G>C, NM_017561.2:c.1971C>G, NM_017561.1:c.1971C>G, NP_060031.1:p.Ser657Arg

Select item 148903128114.

rs1489031281 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 9:94325819 (GRCh38)
9:97088101 (GRCh37)
Canonical SPDI:: NC_000009.12:94325818:C:A,NC_000009.12:94325818:C:G
Gene:: NUTM2F (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
HGVS:: NC_000009.12:g.94325819C>A, NC_000009.12:g.94325819C>G, NC_000009.11:g.97088101C>A, NC_000009.11:g.97088101C>G, NM_017561.2:c.132G>T, NM_017561.2:c.132G>C, NM_017561.1:c.132G>T, NM_017561.1:c.132G>C

Select item 148902411515.

rs1489024115 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:94323326 (GRCh38)
9:97085608 (GRCh37)
Canonical SPDI:: NC_000009.12:94323325:C:T
Gene:: NUTM2F (Varview), LOC105376154 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000009.12:g.94323326C>T, NC_000009.11:g.97085608C>T

Select item 148895639116.

rs1488956391 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:94319076 (GRCh38)
9:97081358 (GRCh37)
Canonical SPDI:: NC_000009.12:94319075:T:G
Gene:: NUTM2F (Varview), LOC105376154 (Varview)
Functional Consequence:: coding_sequence_variant,intron_variant,missense_variant
HGVS:: NC_000009.12:g.94319076T>G, NC_000009.11:g.97081358T>G, NM_017561.2:c.1660A>C, NM_017561.1:c.1660A>C, NP_060031.1:p.Thr554Pro

Select item 148884763017.

rs1488847630 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:94327838 (GRCh38)
9:97090120 (GRCh37)
Canonical SPDI:: NC_000009.12:94327837:A:C
Gene:: NUTM2F (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000022/3 (GnomAD)
HGVS:: NC_000009.12:g.94327838A>C, NC_000009.11:g.97090120A>C

Select item 148864434718.

rs1488644347 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:94323731 (GRCh38)
9:97086013 (GRCh37)
Canonical SPDI:: NC_000009.12:94323730:C:G
Gene:: NUTM2F (Varview), LOC105376154 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.94323731C>G, NC_000009.11:g.97086013C>G

Select item 148802464219.

rs1488024642 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:94327566 (GRCh38)
9:97089848 (GRCh37)
Canonical SPDI:: NC_000009.12:94327565:C:T
Gene:: NUTM2F (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.94327566C>T, NC_000009.11:g.97089848C>T

Select item 148776126520.

rs1487761265 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:94329218 (GRCh38)
9:97091500 (GRCh37)
Canonical SPDI:: NC_000009.12:94329217:T:G
Gene:: NUTM2F (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000009.12:g.94329218T>G, NC_000009.11:g.97091500T>G

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