SNP Links for Gene (Select 54064) - SNP

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Items: 1 to 20 of 3548

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Select item 14909856961.

rs1490985696 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 21:34727046 (GRCh38)
21:36099344 (GRCh37)
Canonical SPDI:: NC_000021.9:34727045:T:A,NC_000021.9:34727045:T:G
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.34727046T>A, NC_000021.9:g.34727046T>G, NC_000021.8:g.36099344T>A, NC_000021.8:g.36099344T>G

Select item 14909781242.

rs1490978124 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 21:34739068 (GRCh38)
21:36111365 (GRCh37)
Canonical SPDI:: NC_000021.9:34739067:C:G
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000021.9:g.34739068C>G, NC_000021.8:g.36111365C>G

Select item 14909290533.

rs1490929053 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 21:34724019 (GRCh38)
21:36096317 (GRCh37)
Canonical SPDI:: NC_000021.9:34724018:C:A
Gene:: LINC00160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.34724019C>A, NC_000021.8:g.36096317C>A

Select item 14905274174.

rs1490527417 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 21:34732033 (GRCh38)
21:36104331 (GRCh37)
Canonical SPDI:: NC_000021.9:34732032:A:G
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.34732033A>G, NC_000021.8:g.36104331A>G

Select item 14904394705.

rs1490439470 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 21:34724483 (GRCh38)
21:36096781 (GRCh37)
Canonical SPDI:: NC_000021.9:34724482:C:G,NC_000021.9:34724482:C:T
Gene:: LINC00160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000021.9:g.34724483C>G, NC_000021.9:g.34724483C>T, NC_000021.8:g.36096781C>G, NC_000021.8:g.36096781C>T

Select item 14904299496.

rs1490429949 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:34723598 (GRCh38)
21:36095896 (GRCh37)
Canonical SPDI:: NC_000021.9:34723597:C:T
Gene:: LINC00160 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.34723598C>T, NC_000021.8:g.36095896C>T

Select item 14899582067.

rs1489958206 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 21:34725142 (GRCh38)
21:36097440 (GRCh37)
Canonical SPDI:: NC_000021.9:34725141:A:G
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000021.9:g.34725142A>G, NC_000021.8:g.36097440A>G

Select item 14893634738.

rs1489363473 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:34732796 (GRCh38)
21:36105094 (GRCh37)
Canonical SPDI:: NC_000021.9:34732795:G:A
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000021.9:g.34732796G>A, NC_000021.8:g.36105094G>A

Select item 14892628669.

rs1489262866 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 21:34726099 (GRCh38)
21:36098397 (GRCh37)
Canonical SPDI:: NC_000021.9:34726098:C:A
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.34726099C>A, NC_000021.8:g.36098397C>A

Select item 148910962810.

rs1489109628 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:34725367 (GRCh38)
21:36097665 (GRCh37)
Canonical SPDI:: NC_000021.9:34725366:C:T
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.34725367C>T, NC_000021.8:g.36097665C>T

Select item 148900624611.

rs1489006246 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 21:34733822 (GRCh38)
21:36106119 (GRCh37)
Canonical SPDI:: NC_000021.9:34733821:C:G,NC_000021.9:34733821:C:T
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000021.9:g.34733822C>G, NC_000021.9:g.34733822C>T, NC_000021.8:g.36106119C>G, NC_000021.8:g.36106119C>T

Select item 148880263512.

rs1488802635 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 21:34725436 (GRCh38)
21:36097734 (GRCh37)
Canonical SPDI:: NC_000021.9:34725435:T:
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.34725436del, NC_000021.8:g.36097734del

Select item 148863641413.

rs1488636414 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:34736728 (GRCh38)
21:36109025 (GRCh37)
Canonical SPDI:: NC_000021.9:34736727:C:T
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.34736728C>T, NC_000021.8:g.36109025C>T

Select item 148858433814.

rs1488584338 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 21:34737624 (GRCh38)
21:36109921 (GRCh37)
Canonical SPDI:: NC_000021.9:34737623:C:T
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.34737624C>T, NC_000021.8:g.36109921C>T

Select item 148850469615.

rs1488504696 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 21:34734211 (GRCh38)
21:36106508 (GRCh37)
Canonical SPDI:: NC_000021.9:34734210:T:C
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000021.9:g.34734211T>C, NC_000021.8:g.36106508T>C

Select item 148839174616.

rs1488391746 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:34732044 (GRCh38)
21:36104342 (GRCh37)
Canonical SPDI:: NC_000021.9:34732043:G:A
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000021.9:g.34732044G>A, NC_000021.8:g.36104342G>A

Select item 148839136217.

rs1488391362 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 21:34733248 (GRCh38)
21:36105546 (GRCh37)
Canonical SPDI:: NC_000021.9:34733247:G:A
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000021.9:g.34733248G>A, NC_000021.8:g.36105546G>A

Select item 148834674418.

rs1488346744 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 21:34733056 (GRCh38)
21:36105354 (GRCh37)
Canonical SPDI:: NC_000021.9:34733055:G:A,NC_000021.9:34733055:G:C
Gene:: LINC00160 (Varview), LOC107985515 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0./0 (GnomAD)
C=0.000004/1 (TOPMED)
HGVS:: NC_000021.9:g.34733056G>A, NC_000021.9:g.34733056G>C, NC_000021.8:g.36105354G>A, NC_000021.8:g.36105354G>C, NR_024351.2:n.249C>T, NR_024351.2:n.249C>G

Select item 148829509919.

rs1488295099 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 21:34724112 (GRCh38)
21:36096410 (GRCh37)
Canonical SPDI:: NC_000021.9:34724111:C:G,NC_000021.9:34724111:C:T
Gene:: LINC00160 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000023/6 (TOPMED)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000021.9:g.34724112C>G, NC_000021.9:g.34724112C>T, NC_000021.8:g.36096410C>G, NC_000021.8:g.36096410C>T, NR_024351.2:n.481G>C, NR_024351.2:n.481G>A

Select item 148813867120.

rs1488138671 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 21:34724610 (GRCh38)
21:36096909 (GRCh37)
Canonical SPDI:: NC_000021.9:34724610:AAAAAA:AAAAAAA
Gene:: LINC00160 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000021.9:g.34724616dup, NC_000021.8:g.36096914dup

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