Links from Gene
Items: 1 to 20 of 2141
1.
rs1491541740 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- CA>-
[Show Flanks]
- Chromosome:
- 19:10516607
(GRCh38)
19:10627283
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10516606:CA:
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0.00531/63
(
ALFA)
-=0.0009/25
(TOMMO)
- HGVS:
2.
rs1491288441 has merged into rs1353152843 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CCTCTGCGTGTCTCTTTG>-,CCTCTGCGTGTCTCTTTGCCTCTGCGTGTCTCTTTG
[Show Flanks]
- Chromosome:
- 19:10518497
(GRCh38)
19:10629173
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10518479:CTCTGCGTGTCTCTTTGCCTCTGCGTGTCTCTTTG:CTCTGCGTGTCTCTTTG,NC_000019.10:10518479:CTCTGCGTGTCTCTTTGCCTCTGCGTGTCTCTTTG:CTCTGCGTGTCTCTTTGCCTCTGCGTGTCTCTTTGCCTCTGCGTGTCTCTTTG
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
CTCTGCGTGTCTCTTTGCCTCTGCGTGTCTCTTTGCCTCTGCGTGTCTCTTTG=0./0
(
ALFA)
- HGVS:
3.
rs1491248068 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CT>-
[Show Flanks]
- Chromosome:
- 19:10518482
(GRCh38)
19:10629158
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10518478:TCTCT:TCT
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency
- MAF:
-=0.000007/1
(GnomAD)
- HGVS:
4.
rs1491168729 has merged into rs113615794 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAAAAAAAAAA>-,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 19:10516617
(GRCh38)
19:10627293
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000019.10:10516607:AAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
- HGVS:
NC_000019.10:g.10516617_10516629del, NC_000019.10:g.10516619_10516629del, NC_000019.10:g.10516620_10516629del, NC_000019.10:g.10516621_10516629del, NC_000019.10:g.10516622_10516629del, NC_000019.10:g.10516623_10516629del, NC_000019.10:g.10516624_10516629del, NC_000019.10:g.10516625_10516629del, NC_000019.10:g.10516626_10516629del, NC_000019.10:g.10516627_10516629del, NC_000019.10:g.10516628_10516629del, NC_000019.10:g.10516629del, NC_000019.10:g.10516629dup, NC_000019.10:g.10516628_10516629dup, NC_000019.10:g.10516627_10516629dup, NC_000019.10:g.10516626_10516629dup, NC_000019.10:g.10516625_10516629dup, NC_000019.9:g.10627293_10627305del, NC_000019.9:g.10627295_10627305del, NC_000019.9:g.10627296_10627305del, NC_000019.9:g.10627297_10627305del, NC_000019.9:g.10627298_10627305del, NC_000019.9:g.10627299_10627305del, NC_000019.9:g.10627300_10627305del, NC_000019.9:g.10627301_10627305del, NC_000019.9:g.10627302_10627305del, NC_000019.9:g.10627303_10627305del, NC_000019.9:g.10627304_10627305del, NC_000019.9:g.10627305del, NC_000019.9:g.10627305dup, NC_000019.9:g.10627304_10627305dup, NC_000019.9:g.10627303_10627305dup, NC_000019.9:g.10627302_10627305dup, NC_000019.9:g.10627301_10627305dup
5.
rs1491136604 has merged into rs555777490 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TT>-,T,TTT,TTTT,TTTTTT
[Show Flanks]
- Chromosome:
- 19:10519719
(GRCh38)
19:10630395
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10519705:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000019.10:10519705:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000019.10:10519705:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000019.10:10519705:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:10519705:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTTTTTT=0./0
(
ALFA)
TTTT=0.000004/1
(TOPMED)
- HGVS:
6.
rs1491072929 has merged into rs376864540 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 19:10512427
(GRCh38)
19:10623103
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000019.10:10512416:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- 500B_downstream_variant,downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
- HGVS:
NC_000019.10:g.10512427_10512438del, NC_000019.10:g.10512428_10512438del, NC_000019.10:g.10512429_10512438del, NC_000019.10:g.10512430_10512438del, NC_000019.10:g.10512431_10512438del, NC_000019.10:g.10512433_10512438del, NC_000019.10:g.10512434_10512438del, NC_000019.10:g.10512435_10512438del, NC_000019.10:g.10512436_10512438del, NC_000019.10:g.10512437_10512438del, NC_000019.10:g.10512438del, NC_000019.10:g.10512438dup, NC_000019.10:g.10512437_10512438dup, NC_000019.10:g.10512436_10512438dup, NC_000019.10:g.10512435_10512438dup, NC_000019.10:g.10512434_10512438dup, NC_000019.10:g.10512433_10512438dup, NC_000019.10:g.10512432_10512438dup, NC_000019.10:g.10512431_10512438dup, NC_000019.10:g.10512429_10512438dup, NC_000019.10:g.10512423_10512438dup, NC_000019.10:g.10512422_10512438dup, NC_000019.9:g.10623103_10623114del, NC_000019.9:g.10623104_10623114del, NC_000019.9:g.10623105_10623114del, NC_000019.9:g.10623106_10623114del, NC_000019.9:g.10623107_10623114del, NC_000019.9:g.10623109_10623114del, NC_000019.9:g.10623110_10623114del, NC_000019.9:g.10623111_10623114del, NC_000019.9:g.10623112_10623114del, NC_000019.9:g.10623113_10623114del, NC_000019.9:g.10623114del, NC_000019.9:g.10623114dup, NC_000019.9:g.10623113_10623114dup, NC_000019.9:g.10623112_10623114dup, NC_000019.9:g.10623111_10623114dup, NC_000019.9:g.10623110_10623114dup, NC_000019.9:g.10623109_10623114dup, NC_000019.9:g.10623108_10623114dup, NC_000019.9:g.10623107_10623114dup, NC_000019.9:g.10623105_10623114dup, NC_000019.9:g.10623099_10623114dup, NC_000019.9:g.10623098_10623114dup
10.
rs1490116734 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 19:10516247
(GRCh38)
19:10626923
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10516246:T:C
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000007/1
(GnomAD)
- HGVS:
12.
rs1489504651 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 19:10517115
(GRCh38)
19:10627791
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10517114:C:T
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000021/3
(GnomAD)
- HGVS:
13.
rs1489412164 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 19:10517528
(GRCh38)
19:10628204
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10517527:A:G
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
G=0.000007/1
(GnomAD)
- HGVS:
14.
rs1489379361 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 19:10515510
(GRCh38)
19:10626186
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10515509:G:A
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
A=0.000007/1
(GnomAD)
- HGVS:
15.
rs1489120154 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 19:10513972
(GRCh38)
19:10624648
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10513971:C:T
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- missense_variant,coding_sequence_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000005/1
(GnomAD_exomes)
T=0.000007/1
(GnomAD)
- HGVS:
16.
rs1488151765 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 19:10515440
(GRCh38)
19:10626116
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10515439:C:T
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
17.
rs1486958310 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 19:10512636
(GRCh38)
19:10623312
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10512635:C:T
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.000071/1
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
18.
rs1486225904 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->G
[Show Flanks]
- Chromosome:
- 19:10512923
(GRCh38)
19:10623600
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10512923::G
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- 3_prime_UTR_variant
- Validated:
- by frequency,by cluster
- MAF:
G=0.000185/20
(GnomAD)
G=0.000547/1
(Korea1K)
- HGVS:
19.
rs1485617446 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 19:10519523
(GRCh38)
19:10630199
(GRCh37)
- Canonical SPDI:
- NC_000019.10:10519522:C:T
- Gene:
- S1PR5 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000008/2
(TOPMED)
T=0.000014/2
(GnomAD)
- HGVS: