SNP Links for Gene (Select 50652) - SNP

Links from Gene

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Select item 14915474881.

rs1491547488 has merged into rs59939233 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>-,ATAT [Show Flanks]
Chromosome:: 9:76768583 (GRCh38)
9:79383499 (GRCh37)
Canonical SPDI:: NC_000009.12:76768581:TAT:T,NC_000009.12:76768581:TAT:TATAT
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00084/10 (ALFA)
-=0.12453/2055 (TOMMO)
-=0.14405/259 (Korea1K)
-=0.225/9 (GENOME_DK)
-=0.23193/22117 (GnomAD)
-=0.25606/148 (NorthernSweden)
HGVS:: NC_000009.12:g.76768583_76768584del, NC_000009.12:g.76768583_76768584dup, NC_000009.11:g.79383499_79383500del, NC_000009.11:g.79383499_79383500dup

Select item 14913629742.

rs1491362974 has merged into rs35059224 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAA,AAAAAAAAAAA [Show Flanks]
Chromosome:: 9:76766197 (GRCh38)
9:79381113 (GRCh37)
Canonical SPDI:: NC_000009.12:76766182:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000009.12:76766182:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000009.12:76766182:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000009.12:76766182:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000009.12:76766182:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000009.12:76766182:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000009.12:g.76766197_76766198del, NC_000009.12:g.76766198del, NC_000009.12:g.76766198dup, NC_000009.12:g.76766197_76766198dup, NC_000009.12:g.76766196_76766198dup, NC_000009.12:g.76766190_76766198dup, NC_000009.11:g.79381113_79381114del, NC_000009.11:g.79381114del, NC_000009.11:g.79381114dup, NC_000009.11:g.79381113_79381114dup, NC_000009.11:g.79381112_79381114dup, NC_000009.11:g.79381106_79381114dup

Select item 14913560863.

rs1491356086 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GTAT,GTATAT,GTGTAT,GTGTGTAT,GTGTGTATATAT,GTGTGTGTAT,GTGTGTGTGTAT,GTGTGTGTGTATAT,GTGTGTGTGTGTAT,GTGTGTGTGTGTATAT,GTGTGTGTGTGTGTAT [Show Flanks]
Chromosome:: 9:76768623 (GRCh38)
9:79383540 (GRCh37)
Canonical SPDI:: NC_000009.12:76768623:T:TGTAT,NC_000009.12:76768623:T:TGTATAT,NC_000009.12:76768623:T:TGTGTAT,NC_000009.12:76768623:T:TGTGTGTAT,NC_000009.12:76768623:T:TGTGTGTATATAT,NC_000009.12:76768623:T:TGTGTGTGTAT,NC_000009.12:76768623:T:TGTGTGTGTGTAT,NC_000009.12:76768623:T:TGTGTGTGTGTATAT,NC_000009.12:76768623:T:TGTGTGTGTGTGTAT,NC_000009.12:76768623:T:TGTGTGTGTGTGTATAT,NC_000009.12:76768623:T:TGTGTGTGTGTGTGTAT
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTATAT=0./0 (ALFA)
HGVS:: NC_000009.12:g.76768624_76768625insGTAT, NC_000009.12:g.76768624_76768625insGTATAT, NC_000009.12:g.76768624TG[2]TAT[1], NC_000009.12:g.76768624TG[3]TAT[1], NC_000009.12:g.76768624TG[3]TA[3]T[1], NC_000009.12:g.76768624TG[4]TAT[1], NC_000009.12:g.76768624TG[5]TAT[1], NC_000009.12:g.76768624TG[5]TA[2]T[1], NC_000009.12:g.76768624TG[6]TAT[1], NC_000009.12:g.76768624TG[6]TA[2]T[1], NC_000009.12:g.76768624TG[7]TAT[1], NC_000009.11:g.79383540_79383541insGTAT, NC_000009.11:g.79383540_79383541insGTATAT, NC_000009.11:g.79383540TG[2]TAT[1], NC_000009.11:g.79383540TG[3]TAT[1], NC_000009.11:g.79383540TG[3]TA[3]T[1], NC_000009.11:g.79383540TG[4]TAT[1], NC_000009.11:g.79383540TG[5]TAT[1], NC_000009.11:g.79383540TG[5]TA[2]T[1], NC_000009.11:g.79383540TG[6]TAT[1], NC_000009.11:g.79383540TG[6]TA[2]T[1], NC_000009.11:g.79383540TG[7]TAT[1]

Select item 14913334414.

rs1491333441 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>-,GTGT,GTGTGT,GTGTGTGT,GTGTGTGTGTGT,GTGTGTGTGTGTGT [Show Flanks]
Chromosome:: 9:76768581 (GRCh38)
9:79383497 (GRCh37)
Canonical SPDI:: NC_000009.12:76768579:TGT:T,NC_000009.12:76768579:TGT:TGTGT,NC_000009.12:76768579:TGT:TGTGTGT,NC_000009.12:76768579:TGT:TGTGTGTGT,NC_000009.12:76768579:TGT:TGTGTGTGTGTGT,NC_000009.12:76768579:TGT:TGTGTGTGTGTGTGT
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGTGT=0./0 (ALFA)
TGTGTG=0.00071/20 (TOMMO)
HGVS:: NC_000009.12:g.76768581_76768582del, NC_000009.12:g.76768581_76768582dup, NC_000009.12:g.76768581GT[3], NC_000009.12:g.76768581GT[4], NC_000009.12:g.76768581GT[6], NC_000009.12:g.76768581GT[7], NC_000009.11:g.79383497_79383498del, NC_000009.11:g.79383497_79383498dup, NC_000009.11:g.79383497GT[3], NC_000009.11:g.79383497GT[4], NC_000009.11:g.79383497GT[6], NC_000009.11:g.79383497GT[7]

Select item 14912905125.

rs1491290512 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->CG
Chromosome:: no mapping
Canonical SPDI:

Select item 14910509756.

rs1491050975 has merged into rs35059224 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAA,AAAAAAAAAAA [Show Flanks]
Chromosome:: 9:76766197 (GRCh38)
9:79381113 (GRCh37)
Canonical SPDI:: NC_000009.12:76766182:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000009.12:76766182:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000009.12:76766182:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000009.12:76766182:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000009.12:76766182:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000009.12:76766182:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000009.12:g.76766197_76766198del, NC_000009.12:g.76766198del, NC_000009.12:g.76766198dup, NC_000009.12:g.76766197_76766198dup, NC_000009.12:g.76766196_76766198dup, NC_000009.12:g.76766190_76766198dup, NC_000009.11:g.79381113_79381114del, NC_000009.11:g.79381114del, NC_000009.11:g.79381114dup, NC_000009.11:g.79381113_79381114dup, NC_000009.11:g.79381112_79381114dup, NC_000009.11:g.79381106_79381114dup

Select item 14910119727.

rs1491011972 has merged into rs5898506 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTT>-,T,TTT,TTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 9:76779242 (GRCh38)
9:79394158 (GRCh37)
Canonical SPDI:: NC_000009.12:76779232:TTTTTTTTTTTTTT:TTTTTTTTT,NC_000009.12:76779232:TTTTTTTTTTTTTT:TTTTTTTTTT,NC_000009.12:76779232:TTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000009.12:76779232:TTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000009.12:76779232:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000009.12:76779232:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000009.12:76779232:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000009.12:76779232:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000009.12:76779232:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000009.12:76779232:TTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
T=0.22003/848 (ALSPAC)
T=0.22654/840 (TWINSUK)
T=0.27955/1400 (1000Genomes)
T=0.325/13 (GENOME_DK)
HGVS:: NC_000009.12:g.76779242_76779246del, NC_000009.12:g.76779243_76779246del, NC_000009.12:g.76779245_76779246del, NC_000009.12:g.76779246del, NC_000009.12:g.76779246dup, NC_000009.12:g.76779245_76779246dup, NC_000009.12:g.76779244_76779246dup, NC_000009.12:g.76779243_76779246dup, NC_000009.12:g.76779242_76779246dup, NC_000009.12:g.76779233_76779246dup, NC_000009.11:g.79394158_79394162del, NC_000009.11:g.79394159_79394162del, NC_000009.11:g.79394161_79394162del, NC_000009.11:g.79394162del, NC_000009.11:g.79394162dup, NC_000009.11:g.79394161_79394162dup, NC_000009.11:g.79394160_79394162dup, NC_000009.11:g.79394159_79394162dup, NC_000009.11:g.79394158_79394162dup, NC_000009.11:g.79394149_79394162dup

Select item 14908563168.

rs1490856316 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:76775263 (GRCh38)
9:79390179 (GRCh37)
Canonical SPDI:: NC_000009.12:76775262:A:G
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.76775263A>G, NC_000009.11:g.79390179A>G

Select item 14906779849.

rs1490677984 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 9:76787327 (GRCh38)
9:79402243 (GRCh37)
Canonical SPDI:: NC_000009.12:76787326:T:A,NC_000009.12:76787326:T:C
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.76787327T>A, NC_000009.12:g.76787327T>C, NC_000009.11:g.79402243T>A, NC_000009.11:g.79402243T>C, NR_015342.2:n.3515T>A, NR_015342.2:n.3515T>C, NR_015342.1:n.3513T>A, NR_015342.1:n.3513T>C, NR_132312.1:n.3680T>A, NR_132312.1:n.3680T>C, NR_132313.1:n.3380T>A, NR_132313.1:n.3380T>C

Select item 149050212610.

rs1490502126 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:76773311 (GRCh38)
9:79388227 (GRCh37)
Canonical SPDI:: NC_000009.12:76773310:G:A
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.76773311G>A, NC_000009.11:g.79388227G>A

Select item 149047608911.

rs1490476089 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:76772042 (GRCh38)
9:79386958 (GRCh37)
Canonical SPDI:: NC_000009.12:76772041:A:T
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.76772042A>T, NC_000009.11:g.79386958A>T

Select item 149011548412.

rs1490115484 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:76780051 (GRCh38)
9:79394967 (GRCh37)
Canonical SPDI:: NC_000009.12:76780050:C:T
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000009.12:g.76780051C>T, NC_000009.11:g.79394967C>T

Select item 149002621913.

rs1490026219 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:76764506 (GRCh38)
9:79379422 (GRCh37)
Canonical SPDI:: NC_000009.12:76764505:G:A
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.76764506G>A, NC_000009.11:g.79379422G>A, NR_015342.2:n.71G>A, NR_015342.1:n.69G>A, NR_132312.1:n.71G>A, NR_132313.1:n.71G>A

Select item 148971045114.

rs1489710451 [Homo sapiens]

Variant type:: DEL
Alleles:: TACACACACACACACAC>- [Show Flanks]
Chromosome:: 9:76776893 (GRCh38)
9:79391809 (GRCh37)
Canonical SPDI:: NC_000009.12:76776892:TACACACACACACACAC:
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
HGVS:: NC_000009.12:g.76776893_76776909del, NC_000009.11:g.79391809_79391825del

Select item 148969213815.

rs1489692138 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:76771989 (GRCh38)
9:79386905 (GRCh37)
Canonical SPDI:: NC_000009.12:76771988:C:T
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000036/5 (GnomAD)
HGVS:: NC_000009.12:g.76771989C>T, NC_000009.11:g.79386905C>T

Select item 148935009716.

rs1489350097 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:76785736 (GRCh38)
9:79400652 (GRCh37)
Canonical SPDI:: NC_000009.12:76785735:T:C
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000009.12:g.76785736T>C, NC_000009.11:g.79400652T>C, NR_015342.2:n.1924T>C, NR_015342.1:n.1922T>C, NR_132312.1:n.2089T>C, NR_132313.1:n.1789T>C

Select item 148905837417.

rs1489058374 has merged into rs541232508 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACACACACACACACACACACA>-,CA,CACA,CACACA,CACACACA,CACACACACA,CACACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA,CACACACACACACACACACACA,CACACACACACACACACACACACA,CACACACACACACACACACACACACA,CACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACACACACACA [Show Flanks]
Chromosome:: 9:76776917 (GRCh38)
9:79391833 (GRCh37)
Canonical SPDI:: NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000009.12:76776893:ACACACACACACACACACACACACACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACACACACACACA=0./0 (ALFA)
HGVS:: NC_000009.12:g.76776895CA[11], NC_000009.12:g.76776895CA[12], NC_000009.12:g.76776895CA[13], NC_000009.12:g.76776895CA[14], NC_000009.12:g.76776895CA[15], NC_000009.12:g.76776895CA[16], NC_000009.12:g.76776895CA[17], NC_000009.12:g.76776895CA[18], NC_000009.12:g.76776895CA[19], NC_000009.12:g.76776895CA[20], NC_000009.12:g.76776895CA[21], NC_000009.12:g.76776895CA[22], NC_000009.12:g.76776895CA[23], NC_000009.12:g.76776895CA[24], NC_000009.12:g.76776895CA[25], NC_000009.12:g.76776895CA[27], NC_000009.12:g.76776895CA[28], NC_000009.12:g.76776895CA[29], NC_000009.12:g.76776895CA[30], NC_000009.12:g.76776895CA[31], NC_000009.12:g.76776895CA[32], NC_000009.12:g.76776895CA[33], NC_000009.12:g.76776895CA[34], NC_000009.12:g.76776895CA[35], NC_000009.11:g.79391811CA[11], NC_000009.11:g.79391811CA[12], NC_000009.11:g.79391811CA[13], NC_000009.11:g.79391811CA[14], NC_000009.11:g.79391811CA[15], NC_000009.11:g.79391811CA[16], NC_000009.11:g.79391811CA[17], NC_000009.11:g.79391811CA[18], NC_000009.11:g.79391811CA[19], NC_000009.11:g.79391811CA[20], NC_000009.11:g.79391811CA[21], NC_000009.11:g.79391811CA[22], NC_000009.11:g.79391811CA[23], NC_000009.11:g.79391811CA[24], NC_000009.11:g.79391811CA[25], NC_000009.11:g.79391811CA[27], NC_000009.11:g.79391811CA[28], NC_000009.11:g.79391811CA[29], NC_000009.11:g.79391811CA[30], NC_000009.11:g.79391811CA[31], NC_000009.11:g.79391811CA[32], NC_000009.11:g.79391811CA[33], NC_000009.11:g.79391811CA[34], NC_000009.11:g.79391811CA[35]

Select item 148854427818.

rs1488544278 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:76782332 (GRCh38)
9:79397248 (GRCh37)
Canonical SPDI:: NC_000009.12:76782331:G:A,NC_000009.12:76782331:G:C
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000009.12:g.76782332G>A, NC_000009.12:g.76782332G>C, NC_000009.11:g.79397248G>A, NC_000009.11:g.79397248G>C

Select item 148847600319.

rs1488476003 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTCA>- [Show Flanks]
Chromosome:: 9:76763499 (GRCh38)
9:79378415 (GRCh37)
Canonical SPDI:: NC_000009.12:76763496:CACTTCA:CA
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.76763499_76763503del, NC_000009.11:g.79378415_79378419del

Select item 148832745620.

rs1488327456 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:76778187 (GRCh38)
9:79393103 (GRCh37)
Canonical SPDI:: NC_000009.12:76778186:G:C
Gene:: PCA3 (Varview), PRUNE2 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000009.12:g.76778187G>C, NC_000009.11:g.79393103G>C

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