SNP Links for Gene (Select 4985) - SNP

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Select item 14915387331.

rs1491538733 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 1:28861913 (GRCh38)
1:29188425 (GRCh37)
Canonical SPDI:: NC_000001.11:28861911:TCT:T
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.28861913_28861914del, NC_000001.10:g.29188425_29188426del

Select item 14914839562.

rs1491483956 has merged into rs56710285 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>-,CTCT [Show Flanks]
Chromosome:: 1:28846825 (GRCh38)
1:29173337 (GRCh37)
Canonical SPDI:: NC_000001.11:28846823:TCT:T,NC_000001.11:28846823:TCT:TCTCT
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.341595/4052 (ALFA)
TC=0.131319/239 (Korea1K)
TC=0.211074/3517 (TOMMO)
-=0.444444/264 (NorthernSweden)
-=0.461445/54505 (GnomAD)
TC=0.5/20 (GENOME_DK)
HGVS:: NC_000001.11:g.28846825_28846826del, NC_000001.11:g.28846825_28846826dup, NC_000001.10:g.29173337_29173338del, NC_000001.10:g.29173337_29173338dup

Select item 14914610253.

rs1491461025 has merged into rs1425143915 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 1:28820925 (GRCh38)
1:29147437 (GRCh37)
Canonical SPDI:: NC_000001.11:28820924:TTTTTTTTT:TTTTTTTT,NC_000001.11:28820924:TTTTTTTTT:TTTTTTTTTT
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.28820933del, NC_000001.11:g.28820933dup, NC_000001.10:g.29147445del, NC_000001.10:g.29147445dup

Select item 14914339144.

rs1491433914 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCT>-,CT [Show Flanks]
Chromosome:: 1:28846895 (GRCh38)
1:29173407 (GRCh37)
Canonical SPDI:: NC_000001.11:28846893:TCTCT:T,NC_000001.11:28846893:TCTCT:TCT
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCT=0.00225/26 (ALFA)
-=0.03662/1592 (GnomAD)
HGVS:: NC_000001.11:g.28846895_28846898del, NC_000001.11:g.28846895CT[1], NC_000001.10:g.29173407_29173410del, NC_000001.10:g.29173407CT[1]

Select item 14914218735.

rs1491421873 [Homo sapiens]

Variant type:: DEL
Alleles:: GA>- [Show Flanks]
Chromosome:: 1:28842967 (GRCh38)
1:29169479 (GRCh37)
Canonical SPDI:: NC_000001.11:28842966:GA:
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000084/1 (ALFA)
-=0.000052/7 (GnomAD)
HGVS:: NC_000001.11:g.28842967_28842968del, NC_000001.10:g.29169479_29169480del

Select item 14912595866.

rs1491259586 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTTTTT [Show Flanks]
Chromosome:: 1:28824314 (GRCh38)
1:29150827 (GRCh37)
Canonical SPDI:: NC_000001.11:28824314:TTTTT:TTTTTCTTTTT
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TTTTTCTTTTT=0.00008/1 (ALFA)
HGVS:: NC_000001.11:g.28824315_28824319T[5]CTTTTT[1], NC_000001.10:g.29150827_29150831T[5]CTTTTT[1]

Select item 14912204047.

rs1491220404 has merged into rs58074384 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTT>-,T,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 1:28824321 (GRCh38)
1:29150833 (GRCh37)
Canonical SPDI:: NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:28824313:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0./0 (ALFA)
-=0.000019/5 (TOPMED)
-=0.28095/1407 (1000Genomes)
HGVS:: NC_000001.11:g.28824321_28824332del, NC_000001.11:g.28824322_28824332del, NC_000001.11:g.28824324_28824332del, NC_000001.11:g.28824325_28824332del, NC_000001.11:g.28824326_28824332del, NC_000001.11:g.28824327_28824332del, NC_000001.11:g.28824328_28824332del, NC_000001.11:g.28824330_28824332del, NC_000001.11:g.28824331_28824332del, NC_000001.11:g.28824332del, NC_000001.11:g.28824332dup, NC_000001.11:g.28824331_28824332dup, NC_000001.11:g.28824330_28824332dup, NC_000001.11:g.28824329_28824332dup, NC_000001.11:g.28824328_28824332dup, NC_000001.11:g.28824327_28824332dup, NC_000001.11:g.28824326_28824332dup, NC_000001.11:g.28824325_28824332dup, NC_000001.11:g.28824324_28824332dup, NC_000001.11:g.28824323_28824332dup, NC_000001.11:g.28824321_28824332dup, NC_000001.11:g.28824320_28824332dup, NC_000001.11:g.28824332_28824333insTTTTTTTTTTTTTTTTTTTTT, NC_000001.10:g.29150833_29150844del, NC_000001.10:g.29150834_29150844del, NC_000001.10:g.29150836_29150844del, NC_000001.10:g.29150837_29150844del, NC_000001.10:g.29150838_29150844del, NC_000001.10:g.29150839_29150844del, NC_000001.10:g.29150840_29150844del, NC_000001.10:g.29150842_29150844del, NC_000001.10:g.29150843_29150844del, NC_000001.10:g.29150844del, NC_000001.10:g.29150844dup, NC_000001.10:g.29150843_29150844dup, NC_000001.10:g.29150842_29150844dup, NC_000001.10:g.29150841_29150844dup, NC_000001.10:g.29150840_29150844dup, NC_000001.10:g.29150839_29150844dup, NC_000001.10:g.29150838_29150844dup, NC_000001.10:g.29150837_29150844dup, NC_000001.10:g.29150836_29150844dup, NC_000001.10:g.29150835_29150844dup, NC_000001.10:g.29150833_29150844dup, NC_000001.10:g.29150832_29150844dup, NC_000001.10:g.29150844_29150845insTTTTTTTTTTTTTTTTTTTTT

Select item 14911586788.

rs1491158678 has merged into rs149592402 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAA>-,A,AA,AAA,AAAA,AAAAAA,AAAAAAA [Show Flanks]
Chromosome:: 1:28829000 (GRCh38)
1:29155512 (GRCh37)
Canonical SPDI:: NC_000001.11:28828989:AAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000001.11:28828989:AAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000001.11:28828989:AAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:28828989:AAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000001.11:28828989:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:28828989:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000001.11:28828989:AAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0./0 (ALFA)
A=0.0882/327 (TWINSUK)
A=0.0893/344 (ALSPAC)
A=0.1741/872 (1000Genomes)
A=0.25/10 (GENOME_DK)
HGVS:: NC_000001.11:g.28829000_28829004del, NC_000001.11:g.28829001_28829004del, NC_000001.11:g.28829002_28829004del, NC_000001.11:g.28829003_28829004del, NC_000001.11:g.28829004del, NC_000001.11:g.28829004dup, NC_000001.11:g.28829003_28829004dup, NC_000001.10:g.29155512_29155516del, NC_000001.10:g.29155513_29155516del, NC_000001.10:g.29155514_29155516del, NC_000001.10:g.29155515_29155516del, NC_000001.10:g.29155516del, NC_000001.10:g.29155516dup, NC_000001.10:g.29155515_29155516dup

Select item 14911035299.

rs1491103529 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 1:28846886 (GRCh38)
1:29173398 (GRCh37)
Canonical SPDI:: NC_000001.11:28846884:TCT:T
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.00008/1 (ALFA)
HGVS:: NC_000001.11:g.28846886_28846887del, NC_000001.10:g.29173398_29173399del

Select item 149106555910.

rs1491065559 has merged into rs1464065604 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>-,CTCT [Show Flanks]
Chromosome:: 1:28846878 (GRCh38)
1:29173390 (GRCh37)
Canonical SPDI:: NC_000001.11:28846876:TCT:T,NC_000001.11:28846876:TCT:TCTCT
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TCTCT=0./0 (ALFA)
HGVS:: NC_000001.11:g.28846878_28846879del, NC_000001.11:g.28846878_28846879dup, NC_000001.10:g.29173390_29173391del, NC_000001.10:g.29173390_29173391dup

Select item 149104579411.

rs1491045794 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 1:28819294 (GRCh38)
1:29145806 (GRCh37)
Canonical SPDI:: NC_000001.11:28819293:AG:
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.28819294_28819295del, NC_000001.10:g.29145806_29145807del

Select item 149104331912.

rs1491043319 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 1:28846853 (GRCh38)
1:29173366 (GRCh37)
Canonical SPDI:: NC_000001.11:28846853:C:CC
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.00008/4 (GnomAD)
HGVS:: NC_000001.11:g.28846854dup, NC_000001.10:g.29173366dup

Select item 149101863613.

rs1491018636 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>-,CTCT [Show Flanks]
Chromosome:: 1:28846862 (GRCh38)
1:29173374 (GRCh37)
Canonical SPDI:: NC_000001.11:28846860:TCT:T,NC_000001.11:28846860:TCT:TCTCT
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TCTCT=0./0 (ALFA)
-=0.00005/3 (GnomAD)
HGVS:: NC_000001.11:g.28846862_28846863del, NC_000001.11:g.28846862_28846863dup, NC_000001.10:g.29173374_29173375del, NC_000001.10:g.29173374_29173375dup

Select item 149097966914.

rs1490979669 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 1:28825578 (GRCh38)
1:29152090 (GRCh37)
Canonical SPDI:: NC_000001.11:28825577:G:C,NC_000001.11:28825577:G:T
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000023/6 (TOPMED)
C=0.004717/1 (Vietnamese)
HGVS:: NC_000001.11:g.28825578G>C, NC_000001.11:g.28825578G>T, NC_000001.10:g.29152090G>C, NC_000001.10:g.29152090G>T

Select item 149095684215.

rs1490956842 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:28811595 (GRCh38)
1:29138107 (GRCh37)
Canonical SPDI:: NC_000001.11:28811594:C:T
Gene:: OPRD1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.28811595C>T, NC_000001.10:g.29138107C>T

Select item 149093188216.

rs1490931882 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:28842463 (GRCh38)
1:29168975 (GRCh37)
Canonical SPDI:: NC_000001.11:28842462:C:G
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.28842463C>G, NC_000001.10:g.29168975C>G

Select item 149091470917.

rs1490914709 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:28863375 (GRCh38)
1:29189887 (GRCh37)
Canonical SPDI:: NC_000001.11:28863374:G:A
Gene:: OPRD1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.28863375G>A, NC_000001.10:g.29189887G>A, NM_000911.4:c.*92G>A, NM_000911.3:c.*92G>A

Select item 149089507618.

rs1490895076 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:28844747 (GRCh38)
1:29171259 (GRCh37)
Canonical SPDI:: NC_000001.11:28844746:T:C
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.28844747T>C, NC_000001.10:g.29171259T>C

Select item 149087601719.

rs1490876017 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:28850114 (GRCh38)
1:29176626 (GRCh37)
Canonical SPDI:: NC_000001.11:28850113:T:A
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.28850114T>A, NC_000001.10:g.29176626T>A

Select item 149072161120.

rs1490721611 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:28843815 (GRCh38)
1:29170327 (GRCh37)
Canonical SPDI:: NC_000001.11:28843814:C:A,NC_000001.11:28843814:C:T
Gene:: OPRD1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.28843815C>A, NC_000001.11:g.28843815C>T, NC_000001.10:g.29170327C>A, NC_000001.10:g.29170327C>T

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