SNP Links for Gene (Select 493812) - SNP

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Select item 14910752471.

rs1491075247 has merged into rs35998206 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA [Show Flanks]
Chromosome:: 6:26525649 (GRCh38)
6:26525877 (GRCh37)
Canonical SPDI:: NC_000006.12:26525636:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000006.12:26525636:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000006.12:26525636:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000006.12:26525636:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000006.12:26525636:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000006.12:26525636:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000006.12:26525636:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000006.12:26525636:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000006.12:26525636:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:26525636:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:26525636:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000006.12:26525636:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
A=0.06081/36 (NorthernSweden)
HGVS:: NC_000006.12:g.26525649_26525657del, NC_000006.12:g.26525650_26525657del, NC_000006.12:g.26525651_26525657del, NC_000006.12:g.26525652_26525657del, NC_000006.12:g.26525654_26525657del, NC_000006.12:g.26525655_26525657del, NC_000006.12:g.26525656_26525657del, NC_000006.12:g.26525657del, NC_000006.12:g.26525657dup, NC_000006.12:g.26525656_26525657dup, NC_000006.12:g.26525655_26525657dup, NC_000006.12:g.26525654_26525657dup, NC_000006.11:g.26525877_26525885del, NC_000006.11:g.26525878_26525885del, NC_000006.11:g.26525879_26525885del, NC_000006.11:g.26525880_26525885del, NC_000006.11:g.26525882_26525885del, NC_000006.11:g.26525883_26525885del, NC_000006.11:g.26525884_26525885del, NC_000006.11:g.26525885del, NC_000006.11:g.26525885dup, NC_000006.11:g.26525884_26525885dup, NC_000006.11:g.26525883_26525885dup, NC_000006.11:g.26525882_26525885dup, NW_025791780.1:g.71829_71837del, NW_025791780.1:g.71830_71837del, NW_025791780.1:g.71831_71837del, NW_025791780.1:g.71832_71837del, NW_025791780.1:g.71834_71837del, NW_025791780.1:g.71835_71837del, NW_025791780.1:g.71836_71837del, NW_025791780.1:g.71837del, NW_025791780.1:g.71837dup, NW_025791780.1:g.71836_71837dup, NW_025791780.1:g.71835_71837dup, NW_025791780.1:g.71834_71837dup, XR_001744057.3:n.1754_1762del, XR_001744057.3:n.1755_1762del, XR_001744057.3:n.1756_1762del, XR_001744057.3:n.1757_1762del, XR_001744057.3:n.1759_1762del, XR_001744057.3:n.1760_1762del, XR_001744057.3:n.1761_1762del, XR_001744057.3:n.1762del, XR_001744057.3:n.1762dup, XR_001744057.3:n.1761_1762dup, XR_001744057.3:n.1760_1762dup, XR_001744057.3:n.1759_1762dup, NR_026790.1:n.3944_3952del, NR_026790.1:n.3945_3952del, NR_026790.1:n.3946_3952del, NR_026790.1:n.3947_3952del, NR_026790.1:n.3949_3952del, NR_026790.1:n.3950_3952del, NR_026790.1:n.3951_3952del, NR_026790.1:n.3952del, NR_026790.1:n.3952dup, NR_026790.1:n.3951_3952dup, NR_026790.1:n.3950_3952dup, NR_026790.1:n.3949_3952dup, XR_007069486.1:n.1754_1762del, XR_007069486.1:n.1755_1762del, XR_007069486.1:n.1756_1762del, XR_007069486.1:n.1757_1762del, XR_007069486.1:n.1759_1762del, XR_007069486.1:n.1760_1762del, XR_007069486.1:n.1761_1762del, XR_007069486.1:n.1762del, XR_007069486.1:n.1762dup, XR_007069486.1:n.1761_1762dup, XR_007069486.1:n.1760_1762dup, XR_007069486.1:n.1759_1762dup

Select item 14910267192.

rs1491026719 has merged into rs201668046 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAAA [Show Flanks]
Chromosome:: 6:26527392 (GRCh38)
6:26527620 (GRCh37)
Canonical SPDI:: NC_000006.12:26527382:AAAAAAAAAAA:AAAAAAAAA,NC_000006.12:26527382:AAAAAAAAAAA:AAAAAAAAAA,NC_000006.12:26527382:AAAAAAAAAAA:AAAAAAAAAAAA,NC_000006.12:26527382:AAAAAAAAAAA:AAAAAAAAAAAAAA
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAA=0./0 (ALFA)
-=0.006151/7 (Korea1K)
-=0.039194/251 (1000Genomes)
-=0.044758/11847 (TOPMED)
-=0.061181/29 (NorthernSweden)
-=0.125/5 (GENOME_DK)
HGVS:: NC_000006.12:g.26527392_26527393del, NC_000006.12:g.26527393del, NC_000006.12:g.26527393dup, NC_000006.12:g.26527391_26527393dup, NC_000006.11:g.26527620_26527621del, NC_000006.11:g.26527621del, NC_000006.11:g.26527621dup, NC_000006.11:g.26527619_26527621dup, NW_025791780.1:g.73572_73573del, NW_025791780.1:g.73573del, NW_025791780.1:g.73573dup, NW_025791780.1:g.73571_73573dup, XR_001744057.3:n.15_16del, XR_001744057.3:n.16del, XR_001744057.3:n.16dup, XR_001744057.3:n.14_16dup, NR_026790.1:n.5687_5688del, NR_026790.1:n.5688del, NR_026790.1:n.5688dup, NR_026790.1:n.5686_5688dup, XR_007069486.1:n.15_16del, XR_007069486.1:n.16del, XR_007069486.1:n.16dup, XR_007069486.1:n.14_16dup

Select item 14909054683.

rs1490905468 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:26525858 (GRCh38)
6:26526086 (GRCh37)
Canonical SPDI:: NC_000006.12:26525857:A:G
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000006.12:g.26525858A>G, NC_000006.11:g.26526086A>G, NW_025791780.1:g.72038A>G, XR_001744057.3:n.1541T>C, NR_026790.1:n.4153A>G, XR_007069486.1:n.1541T>C

Select item 14908904004.

rs1490890400 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 6:26522718 (GRCh38)
6:26522947 (GRCh37)
Canonical SPDI:: NC_000006.12:26522718:A:AA
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0.0002/1 (ALFA)
HGVS:: NC_000006.12:g.26522719dup, NC_000006.11:g.26522947dup, NW_025791780.1:g.68899dup, XR_001744057.3:n.4680dup, XR_001744057.2:n.1506dup, NR_026790.1:n.1014dup, XR_007069486.1:n.4680dup

Select item 14907395505.

rs1490739550 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:26526889 (GRCh38)
6:26527117 (GRCh37)
Canonical SPDI:: NC_000006.12:26526888:T:C
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000026/7 (TOPMED)
HGVS:: NC_000006.12:g.26526889T>C, NC_000006.11:g.26527117T>C, NW_025791780.1:g.73069T>C, XR_001744057.3:n.510A>G, NR_026790.1:n.5184T>C, XR_007069486.1:n.510A>G

Select item 14900877736.

rs1490087773 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:26526782 (GRCh38)
6:26527010 (GRCh37)
Canonical SPDI:: NC_000006.12:26526781:A:C
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.26526782A>C, NC_000006.11:g.26527010A>C, NW_025791780.1:g.72962A>C, XR_001744057.3:n.617T>G, NR_026790.1:n.5077A>C, XR_007069486.1:n.617T>G

Select item 14900592267.

rs1490059226 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:26520382 (GRCh38)
6:26520610 (GRCh37)
Canonical SPDI:: NC_000006.12:26520381:C:T
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
T=0.000106/2 (TOMMO)
HGVS:: NC_000006.12:g.26520382C>T, NC_000006.11:g.26520610C>T, NW_025791780.1:g.66562C>T

Select item 14900340558.

rs1490034055 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:26521157 (GRCh38)
6:26521385 (GRCh37)
Canonical SPDI:: NC_000006.12:26521156:C:T
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.26521157C>T, NC_000006.11:g.26521385C>T, NW_025791780.1:g.67337C>T

Select item 14894894299.

rs1489489429 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:26524354 (GRCh38)
6:26524582 (GRCh37)
Canonical SPDI:: NC_000006.12:26524353:A:G
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.26524354A>G, NC_000006.11:g.26524582A>G, NW_025791780.1:g.70534A>G, XR_001744057.3:n.3045T>C, NR_026790.1:n.2649A>G, XR_007069486.1:n.3045T>C

Select item 148940316510.

rs1489403165 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 6:26525819 (GRCh38)
6:26526047 (GRCh37)
Canonical SPDI:: NC_000006.12:26525818:A:
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.26525819del, NC_000006.11:g.26526047del, NW_025791780.1:g.71999del, XR_001744057.3:n.1580del, NR_026790.1:n.4114del, XR_007069486.1:n.1580del

Select item 148899373711.

rs1488993737 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:26520837 (GRCh38)
6:26521065 (GRCh37)
Canonical SPDI:: NC_000006.12:26520836:C:T
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000006.12:g.26520837C>T, NC_000006.11:g.26521065C>T, NW_025791780.1:g.67017C>T

Select item 148856164812.

rs1488561648 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:26524972 (GRCh38)
6:26525200 (GRCh37)
Canonical SPDI:: NC_000006.12:26524971:G:C
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.26524972G>C, NC_000006.11:g.26525200G>C, NW_025791780.1:g.71152G>C, XR_001744057.3:n.2427C>G, NR_026790.1:n.3267G>C, XR_007069486.1:n.2427C>G

Select item 148776818613.

rs1487768186 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:26521114 (GRCh38)
6:26521342 (GRCh37)
Canonical SPDI:: NC_000006.12:26521113:G:A
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.26521114G>A, NC_000006.11:g.26521342G>A, NW_025791780.1:g.67294G>A

Select item 148770432614.

rs1487704326 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:26522075 (GRCh38)
6:26522303 (GRCh37)
Canonical SPDI:: NC_000006.12:26522074:G:T
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.26522075G>T, NC_000006.11:g.26522303G>T, NW_025791780.1:g.68255G>T, XR_001744057.3:n.5324C>A, XR_001744057.2:n.2150C>A, NR_026790.1:n.370G>T, XR_007069486.1:n.5324C>A

Select item 148757692115.

rs1487576921 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:26525399 (GRCh38)
6:26525627 (GRCh37)
Canonical SPDI:: NC_000006.12:26525398:G:A
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.26525399G>A, NC_000006.11:g.26525627G>A, NW_025791780.1:g.71579G>A, XR_001744057.3:n.2000C>T, NR_026790.1:n.3694G>A, XR_007069486.1:n.2000C>T

Select item 148750382516.

rs1487503825 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:26525691 (GRCh38)
6:26525919 (GRCh37)
Canonical SPDI:: NC_000006.12:26525690:G:C
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.26525691G>C, NC_000006.11:g.26525919G>C, NW_025791780.1:g.71871G>C, XR_001744057.3:n.1708C>G, NR_026790.1:n.3986G>C, XR_007069486.1:n.1708C>G

Select item 148745304517.

rs1487453045 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:26526833 (GRCh38)
6:26527061 (GRCh37)
Canonical SPDI:: NC_000006.12:26526832:A:G
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.26526833A>G, NC_000006.11:g.26527061A>G, NW_025791780.1:g.73013A>G, XR_001744057.3:n.566T>C, NR_026790.1:n.5128A>G, XR_007069486.1:n.566T>C

Select item 148700426018.

rs1487004260 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:26520685 (GRCh38)
6:26520913 (GRCh37)
Canonical SPDI:: NC_000006.12:26520684:T:A
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000142/2 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.26520685T>A, NC_000006.11:g.26520913T>A, NW_025791780.1:g.66865T>A

Select item 148630713419.

rs1486307134 [Homo sapiens]

Variant type:: DEL
Alleles:: CCG>- [Show Flanks]
Chromosome:: 6:26521853 (GRCh38)
6:26522081 (GRCh37)
Canonical SPDI:: NC_000006.12:26521852:CCG:
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.26521853_26521855del, NC_000006.11:g.26522081_26522083del, NW_025791780.1:g.68033_68035del, XR_001744057.3:n.5544_5546del, XR_001744057.2:n.2370_2372del, XR_001744057.1:n.102_104del, NR_026790.1:n.148_150del, XR_007069486.1:n.5544_5546del

Select item 148621470520.

rs1486214705 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 6:26522987 (GRCh38)
6:26523215 (GRCh37)
Canonical SPDI:: NC_000006.12:26522986:G:C
Gene:: HCG11 (Varview), LOC107986583 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
C=0.000342/1 (KOREAN)
C=0.000546/1 (Korea1K)
HGVS:: NC_000006.12:g.26522987G>C, NC_000006.11:g.26523215G>C, NW_025791780.1:g.69167G>C, XR_001744057.3:n.4412C>G, XR_001744057.2:n.1238C>G, NR_026790.1:n.1282G>C, XR_007069486.1:n.4412C>G

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