SNP Links for Gene (Select 467) - SNP

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Select item 14915712341.

rs1491571234 [Homo sapiens]

Variant type:: INS
Alleles:: ->C,T [Show Flanks]
Chromosome:: 1:212609386 (GRCh38)
1:212782729 (GRCh37)
Canonical SPDI:: NC_000001.11:212609386::C,NC_000001.11:212609386::T
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.212609386_212609387insC, NC_000001.11:g.212609386_212609387insT, NC_000001.10:g.212782728_212782729insC, NC_000001.10:g.212782728_212782729insT, NG_029871.1:g.49032_49033insC, NG_029871.1:g.49032_49033insT

Select item 14914753702.

rs1491475370 has merged into rs1192833712 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGGG>-,G,GG,GGG,GGGGG,GGGGGG,GGGGGGG,GGGGGGGG,GGGGGGGGGGGGGGG,GGGGGGGGGGGGGGGG,GGGGGGGGGGGGGGGGG,GGGGGGGGGGGGGGGGGG [Show Flanks]
Chromosome:: 1:212609385 (GRCh38)
1:212782727 (GRCh37)
Canonical SPDI:: NC_000001.11:212609375:GGGGGGGGGGGGG:GGGGGGGGG,NC_000001.11:212609375:GGGGGGGGGGGGG:GGGGGGGGGG,NC_000001.11:212609375:GGGGGGGGGGGGG:GGGGGGGGGGG,NC_000001.11:212609375:GGGGGGGGGGGGG:GGGGGGGGGGGG,NC_000001.11:212609375:GGGGGGGGGGGGG:GGGGGGGGGGGGGG,NC_000001.11:212609375:GGGGGGGGGGGGG:GGGGGGGGGGGGGGG,NC_000001.11:212609375:GGGGGGGGGGGGG:GGGGGGGGGGGGGGGG,NC_000001.11:212609375:GGGGGGGGGGGGG:GGGGGGGGGGGGGGGGG,NC_000001.11:212609375:GGGGGGGGGGGGG:GGGGGGGGGGGGGGGGGGGGGGGG,NC_000001.11:212609375:GGGGGGGGGGGGG:GGGGGGGGGGGGGGGGGGGGGGGGG,NC_000001.11:212609375:GGGGGGGGGGGGG:GGGGGGGGGGGGGGGGGGGGGGGGGG,NC_000001.11:212609375:GGGGGGGGGGGGG:GGGGGGGGGGGGGGGGGGGGGGGGGGG
Gene:: ATF3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGGGG=0./0 (ALFA)
-=0.2695/76 (NorthernSweden)
HGVS:: NC_000001.11:g.212609385_212609388del, NC_000001.11:g.212609386_212609388del, NC_000001.11:g.212609387_212609388del, NC_000001.11:g.212609388del, NC_000001.11:g.212609388dup, NC_000001.11:g.212609387_212609388dup, NC_000001.11:g.212609386_212609388dup, NC_000001.11:g.212609385_212609388dup, NC_000001.11:g.212609378_212609388dup, NC_000001.11:g.212609377_212609388dup, NC_000001.11:g.212609376_212609388dup, NC_000001.11:g.212609388_212609389insGGGGGGGGGGGGGG, NC_000001.10:g.212782727_212782730del, NC_000001.10:g.212782728_212782730del, NC_000001.10:g.212782729_212782730del, NC_000001.10:g.212782730del, NC_000001.10:g.212782730dup, NC_000001.10:g.212782729_212782730dup, NC_000001.10:g.212782728_212782730dup, NC_000001.10:g.212782727_212782730dup, NC_000001.10:g.212782720_212782730dup, NC_000001.10:g.212782719_212782730dup, NC_000001.10:g.212782718_212782730dup, NC_000001.10:g.212782730_212782731insGGGGGGGGGGGGGG, NG_029871.1:g.49031_49034del, NG_029871.1:g.49032_49034del, NG_029871.1:g.49033_49034del, NG_029871.1:g.49034del, NG_029871.1:g.49034dup, NG_029871.1:g.49033_49034dup, NG_029871.1:g.49032_49034dup, NG_029871.1:g.49031_49034dup, NG_029871.1:g.49024_49034dup, NG_029871.1:g.49023_49034dup, NG_029871.1:g.49022_49034dup, NG_029871.1:g.49034_49035insGGGGGGGGGGGGGG

Select item 14913439673.

rs1491343967 has merged into rs149105509 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAAA,AAAAAAA [Show Flanks]
Chromosome:: 1:212590434 (GRCh38)
1:212763776 (GRCh37)
Canonical SPDI:: NC_000001.11:212590425:AAAAAAAAAA:AAAAAAAA,NC_000001.11:212590425:AAAAAAAAAA:AAAAAAAAA,NC_000001.11:212590425:AAAAAAAAAA:AAAAAAAAAAA,NC_000001.11:212590425:AAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:212590425:AAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:212590425:AAAAAAAAAA:AAAAAAAAAAAAAAA
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
A=0.224417/59401 (TOPMED)
A=0.269071/1037 (ALSPAC)
A=0.271845/1008 (TWINSUK)
A=0.404211/1747 (Estonian)
HGVS:: NC_000001.11:g.212590434_212590435del, NC_000001.11:g.212590435del, NC_000001.11:g.212590435dup, NC_000001.11:g.212590434_212590435dup, NC_000001.11:g.212590432_212590435dup, NC_000001.11:g.212590431_212590435dup, NC_000001.10:g.212763776_212763777del, NC_000001.10:g.212763777del, NC_000001.10:g.212763777dup, NC_000001.10:g.212763776_212763777dup, NC_000001.10:g.212763774_212763777dup, NC_000001.10:g.212763773_212763777dup, NG_029871.1:g.30080_30081del, NG_029871.1:g.30081del, NG_029871.1:g.30081dup, NG_029871.1:g.30080_30081dup, NG_029871.1:g.30078_30081dup, NG_029871.1:g.30077_30081dup

Select item 14913014024.

rs1491301402 has merged into rs11404416 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATCTATCTATCTATC>-,TATC,TATCTATC,TATCTATCTATC,TATCTATCTATCTATCTATC,TATCTATCTATCTATCTATCTATC,TATCTATCTATCTATCTATCTATCTATC,TATCTATCTATCTATCTATCTATCTATCTATC,TATCTATCTATCTATCTATCTATCTATCTATCTATC,TATCTATCTATCTATCTATCTATCTATCTATCTATCTATC [Show Flanks]
Chromosome:: 1:212597436 (GRCh38)
1:212770778 (GRCh37)
Canonical SPDI:: NC_000001.11:212597419:TATCTATCTATCTATCTATCTATCTATCTATC:TATCTATCTATCTATC,NC_000001.11:212597419:TATCTATCTATCTATCTATCTATCTATCTATC:TATCTATCTATCTATCTATC,NC_000001.11:212597419:TATCTATCTATCTATCTATCTATCTATCTATC:TATCTATCTATCTATCTATCTATC,NC_000001.11:212597419:TATCTATCTATCTATCTATCTATCTATCTATC:TATCTATCTATCTATCTATCTATCTATC,NC_000001.11:212597419:TATCTATCTATCTATCTATCTATCTATCTATC:TATCTATCTATCTATCTATCTATCTATCTATCTATC,NC_000001.11:212597419:TATCTATCTATCTATCTATCTATCTATCTATC:TATCTATCTATCTATCTATCTATCTATCTATCTATCTATC,NC_000001.11:212597419:TATCTATCTATCTATCTATCTATCTATCTATC:TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC,NC_000001.11:212597419:TATCTATCTATCTATCTATCTATCTATCTATC:TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC,NC_000001.11:212597419:TATCTATCTATCTATCTATCTATCTATCTATC:TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC,NC_000001.11:212597419:TATCTATCTATCTATCTATCTATCTATCTATC:TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC
Gene:: ATF3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATCTATCTATCTATCTATC=0./0 (ALFA)
TATC=0.2885/1445 (1000Genomes)
HGVS:: NC_000001.11:g.212597420TATC[4], NC_000001.11:g.212597420TATC[5], NC_000001.11:g.212597420TATC[6], NC_000001.11:g.212597420TATC[7], NC_000001.11:g.212597420TATC[9], NC_000001.11:g.212597420TATC[10], NC_000001.11:g.212597420TATC[11], NC_000001.11:g.212597420TATC[12], NC_000001.11:g.212597420TATC[13], NC_000001.11:g.212597420TATC[14], NC_000001.10:g.212770762TATC[4], NC_000001.10:g.212770762TATC[5], NC_000001.10:g.212770762TATC[6], NC_000001.10:g.212770762TATC[7], NC_000001.10:g.212770762TATC[9], NC_000001.10:g.212770762TATC[10], NC_000001.10:g.212770762TATC[11], NC_000001.10:g.212770762TATC[12], NC_000001.10:g.212770762TATC[13], NC_000001.10:g.212770762TATC[14], NG_029871.1:g.37066TATC[4], NG_029871.1:g.37066TATC[5], NG_029871.1:g.37066TATC[6], NG_029871.1:g.37066TATC[7], NG_029871.1:g.37066TATC[9], NG_029871.1:g.37066TATC[10], NG_029871.1:g.37066TATC[11], NG_029871.1:g.37066TATC[12], NG_029871.1:g.37066TATC[13], NG_029871.1:g.37066TATC[14]

Select item 14912936195.

rs1491293619 [Homo sapiens]

Variant type:: DELINS
Alleles:: GC>- [Show Flanks]
Chromosome:: 1:212575022 (GRCh38)
1:212748364 (GRCh37)
Canonical SPDI:: NC_000001.11:212575020:CGC:C
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by cluster
HGVS:: NC_000001.11:g.212575022_212575023del, NC_000001.10:g.212748364_212748365del, NG_029871.1:g.14668_14669del

Select item 14912455336.

rs1491245533 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AG [Show Flanks]
Chromosome:: 1:212609376 (GRCh38)
1:212782719 (GRCh37)
Canonical SPDI:: NC_000001.11:212609376:G:GAG
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GAG=0./0 (ALFA)
GA=0.00071/39 (GnomAD)
HGVS:: NC_000001.11:g.212609377_212609378insAG, NC_000001.10:g.212782719_212782720insAG, NG_029871.1:g.49023_49024insAG

Select item 14911517837.

rs1491151783 [Homo sapiens]

Variant type:: DELINS
Alleles:: TG>- [Show Flanks]
Chromosome:: 1:212609375 (GRCh38)
1:212782717 (GRCh37)
Canonical SPDI:: NC_000001.11:212609373:GTG:G
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.212609375_212609376del, NC_000001.10:g.212782717_212782718del, NG_029871.1:g.49021_49022del

Select item 14910867348.

rs1491086734 has merged into rs149105509 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAAA,AAAAAAA [Show Flanks]
Chromosome:: 1:212590434 (GRCh38)
1:212763776 (GRCh37)
Canonical SPDI:: NC_000001.11:212590425:AAAAAAAAAA:AAAAAAAA,NC_000001.11:212590425:AAAAAAAAAA:AAAAAAAAA,NC_000001.11:212590425:AAAAAAAAAA:AAAAAAAAAAA,NC_000001.11:212590425:AAAAAAAAAA:AAAAAAAAAAAA,NC_000001.11:212590425:AAAAAAAAAA:AAAAAAAAAAAAAA,NC_000001.11:212590425:AAAAAAAAAA:AAAAAAAAAAAAAAA
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
A=0.224417/59401 (TOPMED)
A=0.269071/1037 (ALSPAC)
A=0.271845/1008 (TWINSUK)
A=0.404211/1747 (Estonian)
HGVS:: NC_000001.11:g.212590434_212590435del, NC_000001.11:g.212590435del, NC_000001.11:g.212590435dup, NC_000001.11:g.212590434_212590435dup, NC_000001.11:g.212590432_212590435dup, NC_000001.11:g.212590431_212590435dup, NC_000001.10:g.212763776_212763777del, NC_000001.10:g.212763777del, NC_000001.10:g.212763777dup, NC_000001.10:g.212763776_212763777dup, NC_000001.10:g.212763774_212763777dup, NC_000001.10:g.212763773_212763777dup, NG_029871.1:g.30080_30081del, NG_029871.1:g.30081del, NG_029871.1:g.30081dup, NG_029871.1:g.30080_30081dup, NG_029871.1:g.30078_30081dup, NG_029871.1:g.30077_30081dup

Select item 14910513569.

rs1491051356 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 1:212576721 (GRCh38)
1:212750063 (GRCh37)
Canonical SPDI:: NC_000001.11:212576719:TCT:T
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.02479/294 (ALFA)
-=0.03971/3338 (GnomAD)
-=0.07067/1118 (TOMMO)
HGVS:: NC_000001.11:g.212576721_212576722del, NC_000001.10:g.212750063_212750064del, NG_029871.1:g.16367_16368del

Select item 149104822010.

rs1491048220 has merged into rs1553304833 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGA>-,GA,GAGAGA,GAGAGAGA [Show Flanks]
Chromosome:: 1:212614614 (GRCh38)
1:212787956 (GRCh37)
Canonical SPDI:: NC_000001.11:212614602:AGAGAGAGAGAGAGA:AGAGAGAGAGA,NC_000001.11:212614602:AGAGAGAGAGAGAGA:AGAGAGAGAGAGA,NC_000001.11:212614602:AGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGA,NC_000001.11:212614602:AGAGAGAGAGAGAGA:AGAGAGAGAGAGAGAGAGA
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGAGAGAGAGA=0./0 (ALFA)
AG=0.00173/29 (TOMMO)
AG=0.00382/7 (Korea1K)
AG=0.02333/14 (NorthernSweden)
HGVS:: NC_000001.11:g.212614604GA[5], NC_000001.11:g.212614604GA[6], NC_000001.11:g.212614604GA[8], NC_000001.11:g.212614604GA[9], NC_000001.10:g.212787946GA[5], NC_000001.10:g.212787946GA[6], NC_000001.10:g.212787946GA[8], NC_000001.10:g.212787946GA[9], NG_029871.1:g.54250GA[5], NG_029871.1:g.54250GA[6], NG_029871.1:g.54250GA[8], NG_029871.1:g.54250GA[9]

Select item 149100962211.

rs1491009622 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 1:212589819 (GRCh38)
1:212763161 (GRCh37)
Canonical SPDI:: NC_000001.11:212589818:TA:
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000001.11:g.212589819_212589820del, NC_000001.10:g.212763161_212763162del, NG_029871.1:g.29465_29466del

Select item 149094160612.

rs1490941606 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:212568353 (GRCh38)
1:212741695 (GRCh37)
Canonical SPDI:: NC_000001.11:212568352:A:C
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.212568353A>C, NC_000001.10:g.212741695A>C, NG_029871.1:g.7999A>C

Select item 149092851413.

rs1490928514 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:212583553 (GRCh38)
1:212756895 (GRCh37)
Canonical SPDI:: NC_000001.11:212583552:G:A
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.212583553G>A, NC_000001.10:g.212756895G>A, NG_029871.1:g.23199G>A

Select item 149080494814.

rs1490804948 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:212599590 (GRCh38)
1:212772932 (GRCh37)
Canonical SPDI:: NC_000001.11:212599589:T:C
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000035/1 (TOMMO)
C=0.000057/8 (GnomAD)
C=0.000068/18 (TOPMED)
HGVS:: NC_000001.11:g.212599590T>C, NC_000001.10:g.212772932T>C, NG_029871.1:g.39236T>C

Select item 149079473415.

rs1490794734 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 1:212608584 (GRCh38)
1:212781926 (GRCh37)
Canonical SPDI:: NC_000001.11:212608583:A:C,NC_000001.11:212608583:A:G
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
C=0.001106/2 (Korea1K)
HGVS:: NC_000001.11:g.212608584A>C, NC_000001.11:g.212608584A>G, NC_000001.10:g.212781926A>C, NC_000001.10:g.212781926A>G, NG_029871.1:g.48230A>C, NG_029871.1:g.48230A>G

Select item 149069381316.

rs1490693813 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:212591148 (GRCh38)
1:212764490 (GRCh37)
Canonical SPDI:: NC_000001.11:212591147:G:A
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.00006/1 (TOMMO)
HGVS:: NC_000001.11:g.212591148G>A, NC_000001.10:g.212764490G>A, NG_029871.1:g.30794G>A

Select item 149068140917.

rs1490681409 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:212576553 (GRCh38)
1:212749895 (GRCh37)
Canonical SPDI:: NC_000001.11:212576552:T:G
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.212576553T>G, NC_000001.10:g.212749895T>G, NG_029871.1:g.16199T>G

Select item 149066416818.

rs1490664168 [Homo sapiens]

Variant type:: DEL
Alleles:: TGTTCAC>- [Show Flanks]
Chromosome:: 1:212592405 (GRCh38)
1:212765747 (GRCh37)
Canonical SPDI:: NC_000001.11:212592404:TGTTCAC:
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.212592405_212592411del, NC_000001.10:g.212765747_212765753del, NG_029871.1:g.32051_32057del

Select item 149054477019.

rs1490544770 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:212575922 (GRCh38)
1:212749264 (GRCh37)
Canonical SPDI:: NC_000001.11:212575921:G:A
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.212575922G>A, NC_000001.10:g.212749264G>A, NG_029871.1:g.15568G>A

Select item 149033119720.

rs1490331197 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:212617129 (GRCh38)
1:212790471 (GRCh37)
Canonical SPDI:: NC_000001.11:212617128:G:A
Gene:: ATF3 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000064/9 (GnomAD)
HGVS:: NC_000001.11:g.212617129G>A, NC_000001.10:g.212790471G>A, NG_029871.1:g.56775G>A

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