SNP Links for Gene (Select 442038) - SNP

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Select item 14914191951.

rs1491419195 has merged into rs201006604 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAA>-,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 2:108241936 (GRCh38)
2:108858392 (GRCh37)
Canonical SPDI:: NC_000002.12:108241926:AAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000002.12:108241926:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000002.12:108241926:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000002.12:108241926:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:108241926:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000002.12:108241926:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000002.12:108241926:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000002.12:108241926:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000002.12:108241926:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000002.12:108241926:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:108241926:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAA=0./0 (ALFA)
-=0.371/1858 (1000Genomes)
HGVS:: NC_000002.12:g.108241936_108241945del, NC_000002.12:g.108241939_108241945del, NC_000002.12:g.108241941_108241945del, NC_000002.12:g.108241942_108241945del, NC_000002.12:g.108241943_108241945del, NC_000002.12:g.108241944_108241945del, NC_000002.12:g.108241945del, NC_000002.12:g.108241945dup, NC_000002.12:g.108241944_108241945dup, NC_000002.12:g.108241943_108241945dup, NC_000002.12:g.108241941_108241945dup, NC_000002.11:g.108858392_108858401del, NC_000002.11:g.108858395_108858401del, NC_000002.11:g.108858397_108858401del, NC_000002.11:g.108858398_108858401del, NC_000002.11:g.108858399_108858401del, NC_000002.11:g.108858400_108858401del, NC_000002.11:g.108858401del, NC_000002.11:g.108858401dup, NC_000002.11:g.108858400_108858401dup, NC_000002.11:g.108858399_108858401dup, NC_000002.11:g.108858397_108858401dup

Select item 14912991982.

rs1491299198 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CA [Show Flanks]
Chromosome:: 2:108254718 (GRCh38)
2:108871175 (GRCh37)
Canonical SPDI:: NC_000002.12:108254718:A:ACA
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ACA=0.00128/15 (ALFA)
HGVS:: NC_000002.12:g.108254719_108254720insCA, NC_000002.11:g.108871175_108871176insCA

Select item 14912027533.

rs1491202753 has merged into rs1281464827 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>-,ATAT [Show Flanks]
Chromosome:: 2:108254725 (GRCh38)
2:108871181 (GRCh37)
Canonical SPDI:: NC_000002.12:108254717:TATATATAT:TATATAT,NC_000002.12:108254717:TATATATAT:TATATATATAT
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATATAT=0./0 (ALFA)
HGVS:: NC_000002.12:g.108254719AT[3], NC_000002.12:g.108254719AT[5], NC_000002.11:g.108871175AT[3], NC_000002.11:g.108871175AT[5]

Select item 14911400254.

rs1491140025 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 2:108241926 (GRCh38)
2:108858382 (GRCh37)
Canonical SPDI:: NC_000002.12:108241925:CA:
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00059/7 (ALFA)
HGVS:: NC_000002.12:g.108241926_108241927del, NC_000002.11:g.108858382_108858383del

Select item 14908487065.

rs1490848706 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:108261452 (GRCh38)
2:108877908 (GRCh37)
Canonical SPDI:: NC_000002.12:108261451:T:C
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.108261452T>C, NC_000002.11:g.108877908T>C

Select item 14907993286.

rs1490799328 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:108244234 (GRCh38)
2:108860690 (GRCh37)
Canonical SPDI:: NC_000002.12:108244233:A:G
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.108244234A>G, NC_000002.11:g.108860690A>G

Select item 14907972687.

rs1490797268 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 2:108241713 (GRCh38)
2:108858169 (GRCh37)
Canonical SPDI:: NC_000002.12:108241712:G:A,NC_000002.12:108241712:G:T
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.108241713G>A, NC_000002.12:g.108241713G>T, NC_000002.11:g.108858169G>A, NC_000002.11:g.108858169G>T

Select item 14907209018.

rs1490720901 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:108239390 (GRCh38)
2:108855846 (GRCh37)
Canonical SPDI:: NC_000002.12:108239389:C:G
Gene:: SULT1C3 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0.000084/1 (ALFA)
G=0.000121/13 (GnomAD)
HGVS:: NC_000002.12:g.108239390C>G, NC_000002.11:g.108855846C>G

Select item 14903319019.

rs1490331901 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:108253557 (GRCh38)
2:108870013 (GRCh37)
Canonical SPDI:: NC_000002.12:108253556:A:C
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.108253557A>C, NC_000002.11:g.108870013A>C

Select item 149030557810.

rs1490305578 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:108242705 (GRCh38)
2:108859161 (GRCh37)
Canonical SPDI:: NC_000002.12:108242704:A:G
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.108242705A>G, NC_000002.11:g.108859161A>G

Select item 149028586011.

rs1490285860 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATGTATATAT>-,ATGTATATATATGTATATAT [Show Flanks]
Chromosome:: 2:108254725 (GRCh38)
2:108871181 (GRCh37)
Canonical SPDI:: NC_000002.12:108254713:TATGTATATATATGTATATAT:TATGTATATAT,NC_000002.12:108254713:TATGTATATATATGTATATAT:TATGTATATATATGTATATATATGTATATAT
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATGTATATATATGTATATATATGTATATAT=0./0 (ALFA)
TATGTATATA=0.000004/1 (TOPMED)
TATGTATATA=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.108254715ATGTATATAT[1], NC_000002.12:g.108254715ATGTATATAT[3], NC_000002.11:g.108871171ATGTATATAT[1], NC_000002.11:g.108871171ATGTATATAT[3]

Select item 149014728212.

rs1490147282 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:108263034 (GRCh38)
2:108879490 (GRCh37)
Canonical SPDI:: NC_000002.12:108263033:C:T
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.108263034C>T, NC_000002.11:g.108879490C>T

Select item 148989029113.

rs1489890291 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:108263413 (GRCh38)
2:108879869 (GRCh37)
Canonical SPDI:: NC_000002.12:108263412:C:G
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.108263413C>G, NC_000002.11:g.108879869C>G

Select item 148987009914.

rs1489870099 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:108260992 (GRCh38)
2:108877448 (GRCh37)
Canonical SPDI:: NC_000002.12:108260991:C:T
Gene:: SULT1C3 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.108260992C>T, NC_000002.11:g.108877448C>T

Select item 148986998915.

rs1489869989 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 2:108262516 (GRCh38)
2:108878972 (GRCh37)
Canonical SPDI:: NC_000002.12:108262515:G:T
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.108262516G>T, NC_000002.11:g.108878972G>T

Select item 148969526516.

rs1489695265 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:108266064 (GRCh38)
2:108882520 (GRCh37)
Canonical SPDI:: NC_000002.12:108266063:A:G
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000002.12:g.108266064A>G, NC_000002.11:g.108882520A>G

Select item 148968877217.

rs1489688772 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 2:108241675 (GRCh38)
2:108858131 (GRCh37)
Canonical SPDI:: NC_000002.12:108241674:C:G,NC_000002.12:108241674:C:T
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.108241675C>G, NC_000002.12:g.108241675C>T, NC_000002.11:g.108858131C>G, NC_000002.11:g.108858131C>T

Select item 148966490618.

rs1489664906 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 2:108263449 (GRCh38)
2:108879906 (GRCh37)
Canonical SPDI:: NC_000002.12:108263449:A:AA
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0.000071/1 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000002.12:g.108263450dup, NC_000002.11:g.108879906dup

Select item 148959735419.

rs1489597354 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:108251769 (GRCh38)
2:108868225 (GRCh37)
Canonical SPDI:: NC_000002.12:108251768:A:G
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000026/7 (TOPMED)
G=0.000036/5 (GnomAD)
HGVS:: NC_000002.12:g.108251769A>G, NC_000002.11:g.108868225A>G

Select item 148957819020.

rs1489578190 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:108245497 (GRCh38)
2:108861953 (GRCh37)
Canonical SPDI:: NC_000002.12:108245496:A:G
Gene:: SULT1C3 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.108245497A>G, NC_000002.11:g.108861953A>G

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