SNP Links for Gene (Select 440799) - SNP

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Select item 14907875541.

rs1490787554 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 22:21044236 (GRCh38)
22:21398525 (GRCh37)
Canonical SPDI:: NC_000022.11:21044235:T:G
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000022.11:g.21044236T>G, NC_000022.10:g.21398525T>G, NR_002829.1:n.14A>C

Select item 14905530562.

rs1490553056 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 22:21046223 (GRCh38)
22:21400512 (GRCh37)
Canonical SPDI:: NC_000022.11:21046222:G:A,NC_000022.11:21046222:G:T
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000034/9 (TOPMED)
HGVS:: NC_000022.11:g.21046223G>A, NC_000022.11:g.21046223G>T, NC_000022.10:g.21400512G>A, NC_000022.10:g.21400512G>T

Select item 14904238143.

rs1490423814 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 22:21045088 (GRCh38)
22:21399377 (GRCh37)
Canonical SPDI:: NC_000022.11:21045087:AAA:AA
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.21045090del, NC_000022.10:g.21399379del

Select item 14904085984.

rs1490408598 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:21045214 (GRCh38)
22:21399503 (GRCh37)
Canonical SPDI:: NC_000022.11:21045213:T:C
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.21045214T>C, NC_000022.10:g.21399503T>C

Select item 14897045965.

rs1489704596 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:21045874 (GRCh38)
22:21400163 (GRCh37)
Canonical SPDI:: NC_000022.11:21045873:C:T
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.21045874C>T, NC_000022.10:g.21400163C>T

Select item 14881571686.

rs1488157168 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:21046133 (GRCh38)
22:21400422 (GRCh37)
Canonical SPDI:: NC_000022.11:21046132:G:C
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.21046133G>C, NC_000022.10:g.21400422G>C

Select item 14878718547.

rs1487871854 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 22:21043828 (GRCh38)
22:21398117 (GRCh37)
Canonical SPDI:: NC_000022.11:21043827:T:
Gene:: P2RX6P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000022.11:g.21043828del, NC_000022.10:g.21398117del

Select item 14865724488.

rs1486572448 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 22:21045273 (GRCh38)
22:21399562 (GRCh37)
Canonical SPDI:: NC_000022.11:21045272:C:G,NC_000022.11:21045272:C:T
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.21045273C>G, NC_000022.11:g.21045273C>T, NC_000022.10:g.21399562C>G, NC_000022.10:g.21399562C>T

Select item 14862289909.

rs1486228990 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 22:21042472 (GRCh38)
22:21396761 (GRCh37)
Canonical SPDI:: NC_000022.11:21042471:A:C,NC_000022.11:21042471:A:G
Gene:: P2RX6P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.21042472A>C, NC_000022.11:g.21042472A>G, NC_000022.10:g.21396761A>C, NC_000022.10:g.21396761A>G

Select item 148462480910.

rs1484624809 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:21043586 (GRCh38)
22:21397875 (GRCh37)
Canonical SPDI:: NC_000022.11:21043585:G:A
Gene:: P2RX6P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000022.11:g.21043586G>A, NC_000022.10:g.21397875G>A

Select item 148459747811.

rs1484597478 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:21042851 (GRCh38)
22:21397140 (GRCh37)
Canonical SPDI:: NC_000022.11:21042850:G:C
Gene:: P2RX6P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.21042851G>C, NC_000022.10:g.21397140G>C

Select item 148436965612.

rs1484369656 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 22:21045952 (GRCh38)
22:21400241 (GRCh37)
Canonical SPDI:: NC_000022.11:21045951:G:A,NC_000022.11:21045951:G:C
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000022.11:g.21045952G>A, NC_000022.11:g.21045952G>C, NC_000022.10:g.21400241G>A, NC_000022.10:g.21400241G>C, XM_011530176.3:c.-35G>A, XM_011530176.3:c.-35G>C, NR_027006.2:n.7G>A, NR_027006.2:n.7G>C, NR_110991.2:n.7G>A, NR_110991.2:n.7G>C, NM_001291006.2:c.-35G>A, NM_001291006.2:c.-35G>C, XR_937847.2:n.7G>A, XR_937847.2:n.7G>C, XM_017028797.2:c.-35G>A, XM_017028797.2:c.-35G>C, XR_937856.2:n.7G>A, XR_937856.2:n.7G>C, XR_937849.2:n.7G>A, XR_937849.2:n.7G>C, XR_937851.2:n.7G>A, XR_937851.2:n.7G>C, XR_937858.2:n.7G>A, XR_937858.2:n.7G>C, XR_937859.2:n.7G>A, XR_937859.2:n.7G>C, XR_937862.2:n.7G>A, XR_937862.2:n.7G>C, XR_937861.2:n.7G>A, XR_937861.2:n.7G>C, XM_011530175.2:c.-35G>A, XM_011530175.2:c.-35G>C, XM_011530174.2:c.-35G>A, XM_011530174.2:c.-35G>C, XM_011530177.2:c.-35G>A, XM_011530177.2:c.-35G>C, XM_047441362.1:c.-35G>A, XM_047441362.1:c.-35G>C

Select item 148431238213.

rs1484312382 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:21043974 (GRCh38)
22:21398263 (GRCh37)
Canonical SPDI:: NC_000022.11:21043973:C:T
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.21043974C>T, NC_000022.10:g.21398263C>T

Select item 148413957414.

rs1484139574 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:21046167 (GRCh38)
22:21400456 (GRCh37)
Canonical SPDI:: NC_000022.11:21046166:G:T
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.21046167G>T, NC_000022.10:g.21400456G>T

Select item 148295169015.

rs1482951690 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:21045060 (GRCh38)
22:21399349 (GRCh37)
Canonical SPDI:: NC_000022.11:21045059:C:T
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.21045060C>T, NC_000022.10:g.21399349C>T

Select item 148258525216.

rs1482585252 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 22:21044879 (GRCh38)
22:21399168 (GRCh37)
Canonical SPDI:: NC_000022.11:21044873:TCTCTCT:TCTCT
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTCT=0./0 (ALFA)
-=0.000021/3 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000022.11:g.21044875CT[2], NC_000022.10:g.21399164CT[2]

Select item 148118515617.

rs1481185156 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:21045441 (GRCh38)
22:21399730 (GRCh37)
Canonical SPDI:: NC_000022.11:21045440:T:C
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000022.11:g.21045441T>C, NC_000022.10:g.21399730T>C

Select item 148113507518.

rs1481135075 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:21045792 (GRCh38)
22:21400081 (GRCh37)
Canonical SPDI:: NC_000022.11:21045791:C:T
Gene:: LRRC74B (Varview), P2RX6P (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
HGVS:: NC_000022.11:g.21045792C>T, NC_000022.10:g.21400081C>T

Select item 148103229619.

rs1481032296 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:21043002 (GRCh38)
22:21397291 (GRCh37)
Canonical SPDI:: NC_000022.11:21043001:G:A
Gene:: P2RX6P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.21043002G>A, NC_000022.10:g.21397291G>A

Select item 148062127420.

rs1480621274 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:21042957 (GRCh38)
22:21397246 (GRCh37)
Canonical SPDI:: NC_000022.11:21042956:C:T
Gene:: P2RX6P (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000022.11:g.21042957C>T, NC_000022.10:g.21397246C>T

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