SNP Links for Gene (Select 440508) - SNP

Links from Gene

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Select item 14909193621.

rs1490919362 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 19:7787633 (GRCh38)
19:7852519 (GRCh37)
Canonical SPDI:: NC_000019.10:7787632:C:G,NC_000019.10:7787632:C:T
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.7787633C>G, NC_000019.10:g.7787633C>T, NC_000019.9:g.7852519C>G, NC_000019.9:g.7852519C>T

Select item 14908529712.

rs1490852971 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:7789470 (GRCh38)
19:7854356 (GRCh37)
Canonical SPDI:: NC_000019.10:7789469:C:G
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.7789470C>G, NC_000019.9:g.7854356C>G

Select item 14907090213.

rs1490709021 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:7787396 (GRCh38)
19:7852282 (GRCh37)
Canonical SPDI:: NC_000019.10:7787395:G:A
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.7787396G>A, NC_000019.9:g.7852282G>A

Select item 14904306194.

rs1490430619 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:7788587 (GRCh38)
19:7853473 (GRCh37)
Canonical SPDI:: NC_000019.10:7788586:G:T
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.7788587G>T, NC_000019.9:g.7853473G>T

Select item 14902204425.

rs1490220442 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:7787918 (GRCh38)
19:7852804 (GRCh37)
Canonical SPDI:: NC_000019.10:7787917:C:T
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.7787918C>T, NC_000019.9:g.7852804C>T, NR_002931.2:n.125C>T

Select item 14899403336.

rs1489940333 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 19:7789243 (GRCh38)
19:7854129 (GRCh37)
Canonical SPDI:: NC_000019.10:7789242:C:A,NC_000019.10:7789242:C:G
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000035/1 (TOMMO)
G=0.0001/14 (GnomAD)
G=0.001372/4 (KOREAN)
HGVS:: NC_000019.10:g.7789243C>A, NC_000019.10:g.7789243C>G, NC_000019.9:g.7854129C>A, NC_000019.9:g.7854129C>G, NR_002931.2:n.473C>A, NR_002931.2:n.473C>G

Select item 14896977687.

rs1489697768 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:7789954 (GRCh38)
19:7854840 (GRCh37)
Canonical SPDI:: NC_000019.10:7789953:G:A
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.7789954G>A, NC_000019.9:g.7854840G>A, NR_002931.2:n.877G>A

Select item 14896365368.

rs1489636536 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:7789140 (GRCh38)
19:7854026 (GRCh37)
Canonical SPDI:: NC_000019.10:7789139:A:G
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000019.10:g.7789140A>G, NC_000019.9:g.7854026A>G

Select item 14893237509.

rs1489323750 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 19:7790088 (GRCh38)
19:7854974 (GRCh37)
Canonical SPDI:: NC_000019.10:7790087:G:A,NC_000019.10:7790087:G:T
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000019.10:g.7790088G>A, NC_000019.10:g.7790088G>T, NC_000019.9:g.7854974G>A, NC_000019.9:g.7854974G>T, NR_002931.2:n.1011G>A, NR_002931.2:n.1011G>T

Select item 148872492310.

rs1488724923 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:7786092 (GRCh38)
19:7850978 (GRCh37)
Canonical SPDI:: NC_000019.10:7786091:T:C
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0./0 (GnomAD)
C=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.7786092T>C, NC_000019.9:g.7850978T>C

Select item 148759693211.

rs1487596932 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:7787392 (GRCh38)
19:7852278 (GRCh37)
Canonical SPDI:: NC_000019.10:7787391:C:A,NC_000019.10:7787391:C:T
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.7787392C>A, NC_000019.10:g.7787392C>T, NC_000019.9:g.7852278C>A, NC_000019.9:g.7852278C>T

Select item 148734448412.

rs1487344484 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 19:7788059 (GRCh38)
19:7852945 (GRCh37)
Canonical SPDI:: NC_000019.10:7788058:G:A,NC_000019.10:7788058:G:T
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.7788059G>A, NC_000019.10:g.7788059G>T, NC_000019.9:g.7852945G>A, NC_000019.9:g.7852945G>T

Select item 148724987713.

rs1487249877 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:7788367 (GRCh38)
19:7853253 (GRCh37)
Canonical SPDI:: NC_000019.10:7788366:G:A
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.7788367G>A, NC_000019.9:g.7853253G>A, NR_002931.2:n.245G>A

Select item 148605234314.

rs1486052343 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:7789285 (GRCh38)
19:7854171 (GRCh37)
Canonical SPDI:: NC_000019.10:7789284:G:A
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.7789285G>A, NC_000019.9:g.7854171G>A, NR_002931.2:n.515G>A

Select item 148538175015.

rs1485381750 has merged into rs34539892 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT,TTTTTT [Show Flanks]
Chromosome:: 19:7786187 (GRCh38)
19:7851073 (GRCh37)
Canonical SPDI:: NC_000019.10:7786177:TTTTTTTTTTTTT:TTTTTTTTT,NC_000019.10:7786177:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000019.10:7786177:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000019.10:7786177:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000019.10:7786177:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000019.10:7786177:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTT=0.0002/1 (ALFA)
-=0.4537/2272 (1000Genomes)
HGVS:: NC_000019.10:g.7786187_7786190del, NC_000019.10:g.7786188_7786190del, NC_000019.10:g.7786189_7786190del, NC_000019.10:g.7786190del, NC_000019.10:g.7786190dup, NC_000019.10:g.7786189_7786190dup, NC_000019.9:g.7851073_7851076del, NC_000019.9:g.7851074_7851076del, NC_000019.9:g.7851075_7851076del, NC_000019.9:g.7851076del, NC_000019.9:g.7851076dup, NC_000019.9:g.7851075_7851076dup

Select item 148524199016.

rs1485241990 [Homo sapiens]

Variant type:: DEL
Alleles:: CCTGC>- [Show Flanks]
Chromosome:: 19:7788708 (GRCh38)
19:7853594 (GRCh37)
Canonical SPDI:: NC_000019.10:7788707:CCTGC:
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: -=0.00035/6 (TOMMO)
HGVS:: NC_000019.10:g.7788708_7788712del, NC_000019.9:g.7853594_7853598del

Select item 148509541817.

rs1485095418 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:7785782 (GRCh38)
19:7850668 (GRCh37)
Canonical SPDI:: NC_000019.10:7785781:G:A,NC_000019.10:7785781:G:C
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000019.10:g.7785782G>A, NC_000019.10:g.7785782G>C, NC_000019.9:g.7850668G>A, NC_000019.9:g.7850668G>C

Select item 148502048518.

rs1485020485 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:7788826 (GRCh38)
19:7853712 (GRCh37)
Canonical SPDI:: NC_000019.10:7788825:C:A,NC_000019.10:7788825:C:T
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000019.10:g.7788826C>A, NC_000019.10:g.7788826C>T, NC_000019.9:g.7853712C>A, NC_000019.9:g.7853712C>T, NR_002931.2:n.364C>A, NR_002931.2:n.364C>T

Select item 148384052519.

rs1483840525 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:7789813 (GRCh38)
19:7854699 (GRCh37)
Canonical SPDI:: NC_000019.10:7789812:C:A,NC_000019.10:7789812:C:T
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000019.10:g.7789813C>A, NC_000019.10:g.7789813C>T, NC_000019.9:g.7854699C>A, NC_000019.9:g.7854699C>T, NR_002931.2:n.736C>A, NR_002931.2:n.736C>T

Select item 148367637020.

rs1483676370 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 19:7790721 (GRCh38)
19:7855607 (GRCh37)
Canonical SPDI:: NC_000019.10:7790720:T:A
Gene:: CLEC4GP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.7790721T>A, NC_000019.9:g.7855607T>A, NR_002931.2:n.1644T>A

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