SNP Links for Gene (Select 439990) - SNP

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Select item 14912649771.

rs1491264977 [Homo sapiens]

Variant type:: INS
Alleles:: ->TA,TTTCT [Show Flanks]
Chromosome:: 10:80215784 (GRCh38)
10:81975541 (GRCh37)
Canonical SPDI:: NC_000010.11:80215784::TA,NC_000010.11:80215784::TTTCT
Gene:: LINC00857 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TA=0.00006/1 (ALFA)
HGVS:: NC_000010.11:g.80215784_80215785insTA, NC_000010.11:g.80215784_80215785insTTTCT, NC_000010.10:g.81975540_81975541insTA, NC_000010.10:g.81975540_81975541insTTTCT, NG_009566.3:g.438_439insTA, NG_009566.3:g.438_439insAGAAA

Select item 14912489862.

rs1491248986 [Homo sapiens]

Variant type:: SNV:
Alleles:: CC>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14909916423.

rs1490991642 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:80210965 (GRCh38)
10:81970721 (GRCh37)
Canonical SPDI:: NC_000010.11:80210964:G:C
Gene:: LINC00857 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.80210965G>C, NC_000010.10:g.81970721G>C

Select item 14909664404.

rs1490966440 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:80211895 (GRCh38)
10:81971651 (GRCh37)
Canonical SPDI:: NC_000010.11:80211894:T:C
Gene:: LINC00857 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.80211895T>C, NC_000010.10:g.81971651T>C

Select item 14902619375.

rs1490261937 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:80218029 (GRCh38)
10:81977785 (GRCh37)
Canonical SPDI:: NC_000010.11:80218028:G:C
Gene:: LINC00857 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.80218029G>C, NC_000010.10:g.81977785G>C, NR_038464.1:n.533G>C

Select item 14901896836.

rs1490189683 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 10:80218928 (GRCh38)
10:81978684 (GRCh37)
Canonical SPDI:: NC_000010.11:80218927:C:A,NC_000010.11:80218927:C:G
Gene:: LINC00857 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000010.11:g.80218928C>A, NC_000010.11:g.80218928C>G, NC_000010.10:g.81978684C>A, NC_000010.10:g.81978684C>G, NR_038464.1:n.1432C>A, NR_038464.1:n.1432C>G

Select item 14899060747.

rs1489906074 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:80210378 (GRCh38)
10:81970134 (GRCh37)
Canonical SPDI:: NC_000010.11:80210377:G:A
Gene:: LINC00857 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.80210378G>A, NC_000010.10:g.81970134G>A

Select item 14897814778.

rs1489781477 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:80212722 (GRCh38)
10:81972478 (GRCh37)
Canonical SPDI:: NC_000010.11:80212721:T:G
Gene:: LINC00857 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000038/10 (TOPMED)
G=0.000318/5 (TOMMO)
G=0.001711/5 (KOREAN)
G=0.002729/5 (Korea1K)
HGVS:: NC_000010.11:g.80212722T>G, NC_000010.10:g.81972478T>G

Select item 14896553359.

rs1489655335 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:80218383 (GRCh38)
10:81978139 (GRCh37)
Canonical SPDI:: NC_000010.11:80218382:A:C
Gene:: LINC00857 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.80218383A>C, NC_000010.10:g.81978139A>C, NR_038464.1:n.887A>C

Select item 148965479310.

rs1489654793 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:80211604 (GRCh38)
10:81971360 (GRCh37)
Canonical SPDI:: NC_000010.11:80211603:A:G
Gene:: LINC00857 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.80211604A>G, NC_000010.10:g.81971360A>G

Select item 148909514311.

rs1489095143 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:80217550 (GRCh38)
10:81977306 (GRCh37)
Canonical SPDI:: NC_000010.11:80217549:A:G
Gene:: LINC00857 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.80217550A>G, NC_000010.10:g.81977306A>G

Select item 148908912112.

rs1489089121 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:80206999 (GRCh38)
10:81966755 (GRCh37)
Canonical SPDI:: NC_000010.11:80206998:C:A,NC_000010.11:80206998:C:T
Gene:: ANXA11 (Varview), LINC00857 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000010.11:g.80206999C>A, NC_000010.11:g.80206999C>T, NC_000010.10:g.81966755C>A, NC_000010.10:g.81966755C>T

Select item 148904499913.

rs1489044999 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:80206182 (GRCh38)
10:81965938 (GRCh37)
Canonical SPDI:: NC_000010.11:80206181:C:A,NC_000010.11:80206181:C:T
Gene:: ANXA11 (Varview), LINC00857 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000043/6 (GnomAD)
HGVS:: NC_000010.11:g.80206182C>A, NC_000010.11:g.80206182C>T, NC_000010.10:g.81965938C>A, NC_000010.10:g.81965938C>T

Select item 148895188814.

rs1488951888 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:80218514 (GRCh38)
10:81978270 (GRCh37)
Canonical SPDI:: NC_000010.11:80218513:T:C
Gene:: LINC00857 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.80218514T>C, NC_000010.10:g.81978270T>C, NR_038464.1:n.1018T>C

Select item 148890464215.

rs1488904642 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:80209786 (GRCh38)
10:81969542 (GRCh37)
Canonical SPDI:: NC_000010.11:80209785:A:G
Gene:: LINC00857 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.80209786A>G, NC_000010.10:g.81969542A>G

Select item 148889540616.

rs1488895406 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:80211076 (GRCh38)
10:81970832 (GRCh37)
Canonical SPDI:: NC_000010.11:80211075:T:C
Gene:: LINC00857 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.80211076T>C, NC_000010.10:g.81970832T>C

Select item 148877978417.

rs1488779784 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 10:80211410 (GRCh38)
10:81971167 (GRCh37)
Canonical SPDI:: NC_000010.11:80211410:AAAA:AAAAA
Gene:: LINC00857 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AAAAA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.80211414dup, NC_000010.10:g.81971170dup

Select item 148825369518.

rs1488253695 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:80208818 (GRCh38)
10:81968574 (GRCh37)
Canonical SPDI:: NC_000010.11:80208817:A:G
Gene:: LINC00857 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.80208818A>G, NC_000010.10:g.81968574A>G

Select item 148808347019.

rs1488083470 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:80207824 (GRCh38)
10:81967580 (GRCh37)
Canonical SPDI:: NC_000010.11:80207823:A:G
Gene:: LINC00857 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.80207824A>G, NC_000010.10:g.81967580A>G, NR_038464.1:n.115A>G

Select item 148806147120.

rs1488061471 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:80207694 (GRCh38)
10:81967450 (GRCh37)
Canonical SPDI:: NC_000010.11:80207693:T:C
Gene:: ANXA11 (Varview), LINC00857 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.80207694T>C, NC_000010.10:g.81967450T>C

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