SNP Links for Gene (Select 4115) - SNP

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Select item 14894543661.

rs1489454366 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:30244265 (GRCh38)
X:30262382 (GRCh37)
Canonical SPDI:: NC_000023.11:30244264:C:G
Gene:: MAGEB1 (Varview), MAGEB4 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/3 (GnomAD)
G=0.00003/8 (TOPMED)
HGVS:: NC_000023.11:g.30244265C>G, NC_000023.10:g.30262382C>G, NG_016336.1:g.5535C>G, NG_015870.1:g.7326C>G

Select item 14879850362.

rs1487985036 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:30244085 (GRCh38)
X:30262202 (GRCh37)
Canonical SPDI:: NC_000023.11:30244084:C:A
Gene:: MAGEB1 (Varview), MAGEB4 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.30244085C>A, NC_000023.10:g.30262202C>A, NG_016336.1:g.5355C>A, NG_015870.1:g.7146C>A, NM_002367.4:c.*909C>A, NM_002367.3:c.*909C>A

Select item 14861218123.

rs1486121812 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:30240501 (GRCh38)
X:30258618 (GRCh37)
Canonical SPDI:: NC_000023.11:30240500:T:G
Gene:: MAGEB4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.30240501T>G, NC_000023.10:g.30258618T>G, NG_016336.1:g.1771T>G, NG_015870.1:g.3562T>G

Select item 14859877624.

rs1485987762 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:30241029 (GRCh38)
X:30259146 (GRCh37)
Canonical SPDI:: NC_000023.11:30241028:A:G
Gene:: MAGEB4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.30241029A>G, NC_000023.10:g.30259146A>G, NG_016336.1:g.2299A>G, NG_015870.1:g.4090A>G

Select item 14855229895.

rs1485522989 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:30241393 (GRCh38)
X:30259510 (GRCh37)
Canonical SPDI:: NC_000023.11:30241392:T:C
Gene:: MAGEB4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.30241393T>C, NC_000023.10:g.30259510T>C, NG_016336.1:g.2663T>C, NG_015870.1:g.4454T>C

Select item 14835201276.

rs1483520127 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:30243610 (GRCh38)
X:30261727 (GRCh37)
Canonical SPDI:: NC_000023.11:30243609:C:A
Gene:: MAGEB1 (Varview), MAGEB4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.30243610C>A, NC_000023.10:g.30261727C>A, NG_016336.1:g.4880C>A, NG_015870.1:g.6671C>A, NM_002367.4:c.*434C>A, NM_002367.3:c.*434C>A

Select item 14829289347.

rs1482928934 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:30244434 (GRCh38)
X:30262551 (GRCh37)
Canonical SPDI:: NC_000023.11:30244433:C:A
Gene:: MAGEB1 (Varview), MAGEB4 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000048/5 (GnomAD)
HGVS:: NC_000023.11:g.30244434C>A, NC_000023.10:g.30262551C>A, NG_016336.1:g.5704C>A, NG_015870.1:g.7495C>A

Select item 14815729108.

rs1481572910 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:30242238 (GRCh38)
X:30260355 (GRCh37)
Canonical SPDI:: NC_000023.11:30242237:A:C
Gene:: MAGEB1 (Varview), MAGEB4 (Varview)
Functional Consequence:: 2KB_upstream_variant,coding_sequence_variant,missense_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.30242238A>C, NC_000023.10:g.30260355A>C, NG_016336.1:g.3508A>C, NG_015870.1:g.5299A>C, NM_002367.4:c.103A>C, NM_002367.3:c.103A>C, NP_002358.1:p.Lys35Gln

Select item 14802577129.

rs1480257712 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:30242809 (GRCh38)
X:30260926 (GRCh37)
Canonical SPDI:: NC_000023.11:30242808:A:G
Gene:: MAGEB1 (Varview), MAGEB4 (Varview)
Functional Consequence:: 2KB_upstream_variant,coding_sequence_variant,missense_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.30242809A>G, NC_000023.10:g.30260926A>G, NG_016336.1:g.4079A>G, NG_015870.1:g.5870A>G, NM_002367.4:c.674A>G, NM_002367.3:c.674A>G, NP_002358.1:p.Asn225Ser

Select item 147714447510.

rs1477144475 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:30243430 (GRCh38)
X:30261547 (GRCh37)
Canonical SPDI:: NC_000023.11:30243429:G:A
Gene:: MAGEB1 (Varview), MAGEB4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00001/1 (GnomAD)
A=0.00018/2 (TOMMO)
A=0.000684/2 (KOREAN)
HGVS:: NC_000023.11:g.30243430G>A, NC_000023.10:g.30261547G>A, NG_016336.1:g.4700G>A, NG_015870.1:g.6491G>A, NM_002367.4:c.*254G>A, NM_002367.3:c.*254G>A

Select item 147705471411.

rs1477054714 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:30241828 (GRCh38)
X:30259945 (GRCh37)
Canonical SPDI:: NC_000023.11:30241827:A:G
Gene:: MAGEB1 (Varview), MAGEB4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.30241828A>G, NC_000023.10:g.30259945A>G, NG_016336.1:g.3098A>G, NG_015870.1:g.4889A>G

Select item 147643299612.

rs1476432996 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:30242689 (GRCh38)
X:30260806 (GRCh37)
Canonical SPDI:: NC_000023.11:30242688:A:G
Gene:: MAGEB1 (Varview), MAGEB4 (Varview)
Functional Consequence:: 2KB_upstream_variant,coding_sequence_variant,missense_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000005/1 (GnomAD_exomes)
G=0.000015/4 (TOPMED)
G=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.30242689A>G, NC_000023.10:g.30260806A>G, NG_016336.1:g.3959A>G, NG_015870.1:g.5750A>G, NM_002367.4:c.554A>G, NM_002367.3:c.554A>G, NP_002358.1:p.Asn185Ser

Select item 147598250113.

rs1475982501 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: X:30241390 (GRCh38)
X:30259507 (GRCh37)
Canonical SPDI:: NC_000023.11:30241389:A:G,NC_000023.11:30241389:A:T
Gene:: MAGEB4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.30241390A>G, NC_000023.11:g.30241390A>T, NC_000023.10:g.30259507A>G, NC_000023.10:g.30259507A>T, NG_016336.1:g.2660A>G, NG_016336.1:g.2660A>T, NG_015870.1:g.4451A>G, NG_015870.1:g.4451A>T

Select item 147571836814.

rs1475718368 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:30241348 (GRCh38)
X:30259465 (GRCh37)
Canonical SPDI:: NC_000023.11:30241347:T:C
Gene:: MAGEB4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0./0 (KOREAN)
C=0.000015/4 (TOPMED)
C=0.000405/5 (TOMMO)
HGVS:: NC_000023.11:g.30241348T>C, NC_000023.10:g.30259465T>C, NG_016336.1:g.2618T>C, NG_015870.1:g.4409T>C

Select item 147520851915.

rs1475208519 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:30242007 (GRCh38)
X:30260124 (GRCh37)
Canonical SPDI:: NC_000023.11:30242006:G:A
Gene:: MAGEB1 (Varview), MAGEB4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.30242007G>A, NC_000023.10:g.30260124G>A, NG_016336.1:g.3277G>A, NG_015870.1:g.5068G>A, NM_002367.4:c.-129G>A, NM_002367.3:c.-129G>A

Select item 147445444016.

rs1474454440 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:30241551 (GRCh38)
X:30259668 (GRCh37)
Canonical SPDI:: NC_000023.11:30241550:G:A
Gene:: MAGEB4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000029/3 (GnomAD)
A=0.00003/8 (TOPMED)
HGVS:: NC_000023.11:g.30241551G>A, NC_000023.10:g.30259668G>A, NG_016336.1:g.2821G>A, NG_015870.1:g.4612G>A

Select item 147432171717.

rs1474321717 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:30242797 (GRCh38)
X:30260914 (GRCh37)
Canonical SPDI:: NC_000023.11:30242796:G:T
Gene:: MAGEB1 (Varview), MAGEB4 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000023.11:g.30242797G>T, NC_000023.10:g.30260914G>T, NG_016336.1:g.4067G>T, NG_015870.1:g.5858G>T, NM_002367.4:c.662G>T, NM_002367.3:c.662G>T, NP_002358.1:p.Trp221Leu

Select item 147401548418.

rs1474015484 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:30240004 (GRCh38)
X:30258121 (GRCh37)
Canonical SPDI:: NC_000023.11:30240003:A:G
Gene:: MAGEB4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000023.11:g.30240004A>G, NC_000023.10:g.30258121A>G, NG_016336.1:g.1274A>G, NG_015870.1:g.3065A>G

Select item 147344587919.

rs1473445879 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:30240120 (GRCh38)
X:30258237 (GRCh37)
Canonical SPDI:: NC_000023.11:30240119:G:T
Gene:: MAGEB4 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.000224/1 (ALFA)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.30240120G>T, NC_000023.10:g.30258237G>T, NG_016336.1:g.1390G>T, NG_015870.1:g.3181G>T

Select item 147112773920.

rs1471127739 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:30243796 (GRCh38)
X:30261913 (GRCh37)
Canonical SPDI:: NC_000023.11:30243795:G:A
Gene:: MAGEB1 (Varview), MAGEB4 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,3_prime_UTR_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000048/5 (GnomAD)
A=0.000053/14 (TOPMED)
HGVS:: NC_000023.11:g.30243796G>A, NC_000023.10:g.30261913G>A, NG_016336.1:g.5066G>A, NM_002363.5:c.-255G>A, NM_002363.4:c.-255G>A, NM_177415.3:c.-172G>A, NM_177415.2:c.-172G>A, NG_015870.1:g.6857G>A, NM_002367.4:c.*620G>A, NM_002367.3:c.*620G>A

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