SNP Links for Gene (Select 4100) - SNP

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Select item 14905660171.

rs1490566017 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:153183411 (GRCh38)
X:152481989 (GRCh37)
Canonical SPDI:: NC_000023.11:153183410:T:G
Gene:: MAGEA1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.153183411T>G, NW_003871103.3:g.617394T>G, NG_013243.2:g.9129T>G, NG_013243.1:g.9128T>G, NM_004988.5:c.*92T>G, NM_004988.4:c.*92T>G, NC_000023.10:g.152481989A>C

Select item 14900760902.

rs1490076090 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:153182599 (GRCh38)
X:152482801 (GRCh37)
Canonical SPDI:: NC_000023.11:153182598:C:T
Gene:: MAGEA1 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.153182599C>T, NW_003871103.3:g.616582C>T, NG_013243.2:g.8317C>T, NG_013243.1:g.8316C>T, NM_004988.5:c.210C>T, NM_004988.4:c.210C>T, NC_000023.10:g.152482801G>A

Select item 14894617183.

rs1489461718 has merged into rs199931014 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCTACCACCCCCAATCCCTCCC>- [Show Flanks]
Chromosome:: X:153178534 (GRCh38)
X:152486854 (GRCh37)
Canonical SPDI:: NC_000023.11:153178524:ATCCCTCCCCCTACCACCCCCAATCCCTCCC:ATCCCTCCC
Gene:: MAGEA1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATCCCTCCC=0.009609/135 (ALFA)
-=0.011352/1141 (GnomAD)
-=0.013079/3462 (TOPMED)
ATCCCTCCCCCTACCACCCCCA=0.985016/3718 (1000Genomes)
HGVS:: NC_000023.11:g.153178534_153178555del, NW_003871103.3:g.612517_612538del, NG_013243.2:g.4252_4273del, NG_013243.1:g.4251_4272del, NC_000023.10:g.152486854_152486875del

Select item 14887364864.

rs1488736486 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:153180652 (GRCh38)
X:152484748 (GRCh37)
Canonical SPDI:: NC_000023.11:153180651:G:A
Gene:: MAGEA1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.153180652G>A, NW_003871103.3:g.614635G>A, NG_013243.2:g.6370G>A, NG_013243.1:g.6369G>A, NC_000023.10:g.152484748C>T

Select item 14886356645.

rs1488635664 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:153177541 (GRCh38)
X:152487859 (GRCh37)
Canonical SPDI:: NC_000023.11:153177540:G:A
Gene:: MAGEA1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.153177541G>A, NW_003871103.3:g.611524G>A, NG_013243.2:g.3259G>A, NG_013243.1:g.3258G>A, NC_000023.10:g.152487859C>T

Select item 14884797126.

rs1488479712 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: X:153177919 (GRCh38)
X:152487481 (GRCh37)
Canonical SPDI:: NC_000023.11:153177918:A:C,NC_000023.11:153177918:A:G
Gene:: MAGEA1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.153177919A>C, NC_000023.11:g.153177919A>G, NW_003871103.3:g.611902A>C, NW_003871103.3:g.611902A>G, NG_013243.2:g.3637A>C, NG_013243.2:g.3637A>G, NG_013243.1:g.3636A>C, NG_013243.1:g.3636A>G, NC_000023.10:g.152487481T>G, NC_000023.10:g.152487481T>C

Select item 14871025557.

rs1487102555 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:153184112 (GRCh38)
X:152481288 (GRCh37)
Canonical SPDI:: NC_000023.11:153184111:C:G
Gene:: MAGEA1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.153184112C>G, NW_003871103.3:g.618095C>G, NG_013243.2:g.9830C>G, NG_013243.1:g.9829C>G, NC_000023.10:g.152481288G>C

Select item 14864885488.

rs1486488548 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:153180448 (GRCh38)
X:152484952 (GRCh37)
Canonical SPDI:: NC_000023.11:153180447:C:T
Gene:: MAGEA1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.153180448C>T, NW_003871103.3:g.614431C>T, NG_013243.2:g.6166C>T, NG_013243.1:g.6165C>T, NC_000023.10:g.152484952G>A

Select item 14862404979.

rs1486240497 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:153180019 (GRCh38)
X:152485381 (GRCh37)
Canonical SPDI:: NC_000023.11:153180018:G:A
Gene:: MAGEA1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000023/6 (TOPMED)
A=0.00005/5 (GnomAD)
HGVS:: NC_000023.11:g.153180019G>A, NW_003871103.3:g.614002G>A, NG_013243.2:g.5737G>A, NG_013243.1:g.5736G>A, NC_000023.10:g.152485381C>T

Select item 148621490710.

rs1486214907 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:153179425 (GRCh38)
X:152485975 (GRCh37)
Canonical SPDI:: NC_000023.11:153179424:C:G
Gene:: MAGEA1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000142/2 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.153179425C>G, NW_003871103.3:g.613408C>G, NG_013243.2:g.5143C>G, NG_013243.1:g.5142C>G, NC_000023.10:g.152485975G>C

Select item 148530415511.

rs1485304155 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:153179691 (GRCh38)
X:152485709 (GRCh37)
Canonical SPDI:: NC_000023.11:153179690:C:G
Gene:: MAGEA1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000142/2 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.153179691C>G, NW_003871103.3:g.613674C>G, NG_013243.2:g.5409C>G, NG_013243.1:g.5408C>G, NC_000023.10:g.152485709G>C

Select item 148528332912.

rs1485283329 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:153177820 (GRCh38)
X:152487580 (GRCh37)
Canonical SPDI:: NC_000023.11:153177819:G:A
Gene:: MAGEA1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.153177820G>A, NW_003871103.3:g.611803G>A, NG_013243.2:g.3538G>A, NG_013243.1:g.3537G>A, NC_000023.10:g.152487580C>T

Select item 148316411013.

rs1483164110 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:153181348 (GRCh38)
X:152484052 (GRCh37)
Canonical SPDI:: NC_000023.11:153181347:C:T
Gene:: MAGEA1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.153181348C>T, NW_003871103.3:g.615331C>T, NG_013243.2:g.7066C>T, NG_013243.1:g.7065C>T, NC_000023.10:g.152484052G>A

Select item 148296899114.

rs1482968991 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:153180872 (GRCh38)
X:152484528 (GRCh37)
Canonical SPDI:: NC_000023.11:153180871:T:C
Gene:: MAGEA1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.153180872T>C, NW_003871103.3:g.614855T>C, NG_013243.2:g.6590T>C, NG_013243.1:g.6589T>C, NC_000023.10:g.152484528A>G

Select item 148293916715.

rs1482939167 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:153180345 (GRCh38)
X:152485055 (GRCh37)
Canonical SPDI:: NC_000023.11:153180344:C:T
Gene:: MAGEA1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.153180345C>T, NW_003871103.3:g.614328C>T, NG_013243.2:g.6063C>T, NG_013243.1:g.6062C>T, NC_000023.10:g.152485055G>A

Select item 148159259216.

rs1481592592 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:153184251 (GRCh38)
X:152481149 (GRCh37)
Canonical SPDI:: NC_000023.11:153184250:G:A
Gene:: MAGEA1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.153184251G>A, NW_003871103.3:g.618234G>A, NG_013243.2:g.9969G>A, NG_013243.1:g.9968G>A, NC_000023.10:g.152481149C>T

Select item 148154073017.

rs1481540730 [Homo sapiens]

Variant type:: DELINS
Alleles:: CCACCCTCCAGCCCCA>- [Show Flanks]
Chromosome:: X:153179767 (GRCh38)
X:152485621 (GRCh37)
Canonical SPDI:: NC_000023.11:153179763:CCACCACCCTCCAGCCCCA:CCA
Gene:: MAGEA1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CCA=0./0 (ALFA)
-=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.153179767_153179782del, NW_003871103.3:g.613750_613765del, NG_013243.2:g.5485_5500del, NG_013243.1:g.5484_5499del, NC_000023.10:g.152485621_152485636del

Select item 148091901718.

rs1480919017 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:153183531 (GRCh38)
X:152481869 (GRCh37)
Canonical SPDI:: NC_000023.11:153183530:T:A
Gene:: MAGEA1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00001/1 (GnomAD)
A=0.00003/8 (TOPMED)
HGVS:: NC_000023.11:g.153183531T>A, NW_003871103.3:g.617514T>A, NG_013243.2:g.9249T>A, NG_013243.1:g.9248T>A, NM_004988.5:c.*212T>A, NM_004988.4:c.*212T>A, NC_000023.10:g.152481869A>T

Select item 148033534919.

rs1480335349 has merged into rs782732372 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: X:153178454 (GRCh38)
X:152486943 (GRCh37)
Canonical SPDI:: NC_000023.11:153178454:GGG:GGGG
Gene:: MAGEA1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGG=0./0 (ALFA)
C=0./0 (ALSPAC)
G=0.00002/2 (GnomAD)
G=0.000026/7 (TOPMED)
C=0.00027/1 (TWINSUK)
HGVS:: NC_000023.11:g.153178457dup, NW_003871103.3:g.612440dup, NG_013243.2:g.4175dup, NG_013243.1:g.4174dup, NC_000023.10:g.152486945dup

Select item 147966697420.

rs1479666974 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:153183783 (GRCh38)
X:152481617 (GRCh37)
Canonical SPDI:: NC_000023.11:153183782:T:C
Gene:: MAGEA1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000026/7 (TOPMED)
C=0.000048/5 (GnomAD)
HGVS:: NC_000023.11:g.153183783T>C, NW_003871103.3:g.617766T>C, NG_013243.2:g.9501T>C, NG_013243.1:g.9500T>C, NM_004988.5:c.*464T>C, NM_004988.4:c.*464T>C, NC_000023.10:g.152481617A>G

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