SNP Links for Gene (Select 407021) - SNP

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Select item 14870975681.

rs1487097568 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:130876285 (GRCh38)
7:130561044 (GRCh37)
Canonical SPDI:: NC_000007.14:130876284:C:T
Gene:: MIR29A (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000007.14:g.130876285C>T, NC_000007.13:g.130561044C>T, NW_003871065.1:g.555516C>T

Select item 14869929782.

rs1486992978 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:130877353 (GRCh38)
7:130562112 (GRCh37)
Canonical SPDI:: NC_000007.14:130877352:G:A
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.130877353G>A, NC_000007.13:g.130562112G>A, NW_003871065.1:g.556584G>A

Select item 14867919603.

rs1486791960 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:130877578 (GRCh38)
7:130562337 (GRCh37)
Canonical SPDI:: NC_000007.14:130877577:T:C
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.130877578T>C, NC_000007.13:g.130562337T>C, NW_003871065.1:g.556809T>C, NR_110473.1:n.503A>G

Select item 14865411464.

rs1486541146 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 7:130876313 (GRCh38)
7:130561072 (GRCh37)
Canonical SPDI:: NC_000007.14:130876312:T:A,NC_000007.14:130876312:T:C
Gene:: MIR29A (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000007.14:g.130876313T>A, NC_000007.14:g.130876313T>C, NC_000007.13:g.130561072T>A, NC_000007.13:g.130561072T>C, NW_003871065.1:g.555544T>A, NW_003871065.1:g.555544T>C

Select item 14848348565.

rs1484834856 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:130878529 (GRCh38)
7:130563288 (GRCh37)
Canonical SPDI:: NC_000007.14:130878528:C:T
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000007.14:g.130878529C>T, NC_000007.13:g.130563288C>T, NW_003871065.1:g.557760C>T

Select item 14766608996.

rs1476660899 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:130876419 (GRCh38)
7:130561178 (GRCh37)
Canonical SPDI:: NC_000007.14:130876418:C:T
Gene:: MIR29A (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.00007/1 (ALFA)
HGVS:: NC_000007.14:g.130876419C>T, NC_000007.13:g.130561178C>T, NW_003871065.1:g.555650C>T

Select item 14765568097.

rs1476556809 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:130877542 (GRCh38)
7:130562301 (GRCh37)
Canonical SPDI:: NC_000007.14:130877541:G:A
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000007.14:g.130877542G>A, NC_000007.13:g.130562301G>A, NW_003871065.1:g.556773G>A

Select item 14756826698.

rs1475682669 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAG>- [Show Flanks]
Chromosome:: 7:130876951 (GRCh38)
7:130561710 (GRCh37)
Canonical SPDI:: NC_000007.14:130876947:AAGAAG:AAG
Gene:: MIR29A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAGAAG=0./0 (ALFA)
-=0.000078/11 (GnomAD)
-=0.000249/66 (TOPMED)
HGVS:: NC_000007.14:g.130876948AAG[1], NC_000007.13:g.130561707AAG[1], NW_003871065.1:g.556179AAG[1]

Select item 14755811469.

rs1475581146 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:130878007 (GRCh38)
7:130562766 (GRCh37)
Canonical SPDI:: NC_000007.14:130878006:A:G
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.130878007A>G, NC_000007.13:g.130562766A>G, NW_003871065.1:g.557238A>G

Select item 147506212610.

rs1475062126 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:130877454 (GRCh38)
7:130562213 (GRCh37)
Canonical SPDI:: NC_000007.14:130877453:G:A
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.130877454G>A, NC_000007.13:g.130562213G>A, NW_003871065.1:g.556685G>A

Select item 147459802211.

rs1474598022 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:130878488 (GRCh38)
7:130563247 (GRCh37)
Canonical SPDI:: NC_000007.14:130878487:C:T
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.130878488C>T, NC_000007.13:g.130563247C>T, NW_003871065.1:g.557719C>T

Select item 147029795312.

rs1470297953 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:130878372 (GRCh38)
7:130563131 (GRCh37)
Canonical SPDI:: NC_000007.14:130878371:T:G
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.130878372T>G, NC_000007.13:g.130563131T>G, NW_003871065.1:g.557603T>G

Select item 146944044013.

rs1469440440 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:130877909 (GRCh38)
7:130562668 (GRCh37)
Canonical SPDI:: NC_000007.14:130877908:G:A
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.130877909G>A, NC_000007.13:g.130562668G>A, NW_003871065.1:g.557140G>A

Select item 146875659714.

rs1468756597 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:130877716 (GRCh38)
7:130562475 (GRCh37)
Canonical SPDI:: NC_000007.14:130877715:C:A
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.130877716C>A, NC_000007.13:g.130562475C>A, NW_003871065.1:g.556947C>A

Select item 146801975115.

rs1468019751 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:130878433 (GRCh38)
7:130563192 (GRCh37)
Canonical SPDI:: NC_000007.14:130878432:G:A
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000007.14:g.130878433G>A, NC_000007.13:g.130563192G>A, NW_003871065.1:g.557664G>A

Select item 146613750616.

rs1466137506 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:130878636 (GRCh38)
7:130563395 (GRCh37)
Canonical SPDI:: NC_000007.14:130878635:A:G
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.130878636A>G, NC_000007.13:g.130563395A>G, NW_003871065.1:g.557867A>G

Select item 146441577317.

rs1464415773 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:130876523 (GRCh38)
7:130561282 (GRCh37)
Canonical SPDI:: NC_000007.14:130876522:T:A
Gene:: MIR29A (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.130876523T>A, NC_000007.13:g.130561282T>A, NW_003871065.1:g.555754T>A

Select item 146371914118.

rs1463719141 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:130877679 (GRCh38)
7:130562438 (GRCh37)
Canonical SPDI:: NC_000007.14:130877678:C:T
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.130877679C>T, NC_000007.13:g.130562438C>T, NW_003871065.1:g.556910C>T

Select item 146319292519.

rs1463192925 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AATA [Show Flanks]
Chromosome:: 7:130876552 (GRCh38)
7:130561312 (GRCh37)
Canonical SPDI:: NC_000007.14:130876552:AATA:AATAAATA
Gene:: MIR29A (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AATAAATA=0./0 (ALFA)
AATA=0.000029/4 (GnomAD)
AATA=0.00006/16 (TOPMED)
AATA=0.000546/1 (Korea1K)
HGVS:: NC_000007.14:g.130876553_130876556dup, NC_000007.13:g.130561312_130561315dup, NW_003871065.1:g.555784_555787dup

Select item 146308618620.

rs1463086186 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:130877812 (GRCh38)
7:130562571 (GRCh37)
Canonical SPDI:: NC_000007.14:130877811:T:C
Gene:: LINC-PINT (Varview), MIR29A (Varview), MIR29B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000026/7 (TOPMED)
HGVS:: NC_000007.14:g.130877812T>C, NC_000007.13:g.130562571T>C, NW_003871065.1:g.557043T>C

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