SNP Links for Gene (Select 406991) - SNP

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 17:59839297 (GRCh38)
17:57916658 (GRCh37)
Canonical SPDI:: NC_000017.11:59839296:C:G,NC_000017.11:59839296:C:T
Gene:: VMP1 (Varview), MIR21 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000017.11:g.59839297C>G, NC_000017.11:g.59839297C>T, NC_000017.10:g.57916658C>G, NC_000017.10:g.57916658C>T, NG_051107.1:g.136833C>G, NG_051107.1:g.136833C>T, NG_065204.1:g.2147C>G, NG_065204.1:g.2147C>T

Select item 146922162912.

rs1469221629 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:59839865 (GRCh38)
17:57917226 (GRCh37)
Canonical SPDI:: NC_000017.11:59839864:C:T
Gene:: VMP1 (Varview), MIR21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.59839865C>T, NC_000017.10:g.57917226C>T, NG_051107.1:g.137401C>T, NM_030938.5:c.1175C>T, NM_030938.4:c.1175C>T, NM_030938.3:c.1175C>T, NM_001329394.2:c.1175C>T, NM_001329394.1:c.1175C>T, NM_001329395.2:c.1214C>T, NM_001329395.1:c.1214C>T, NM_001329398.2:c.923C>T, NM_001329398.1:c.923C>T, NM_001329399.2:c.884C>T, NM_001329399.1:c.884C>T, NM_001329396.2:c.1064C>T, NM_001329396.1:c.1064C>T, NM_001329402.2:c.599C>T, NM_001329402.1:c.599C>T, NM_001329397.2:c.1007C>T, NM_001329397.1:c.1007C>T, NM_001329400.2:c.773C>T, NM_001329400.1:c.773C>T, NM_001329401.2:c.716C>T, NM_001329401.1:c.716C>T, NP_112200.2:p.Ala392Val, NP_001316323.1:p.Ala392Val, NP_001316324.1:p.Ala405Val, NP_001316327.1:p.Ala308Val, NP_001316328.1:p.Ala295Val, NP_001316325.1:p.Ala355Val, NP_001316331.1:p.Ala200Val, NP_001316326.1:p.Ala336Val, NP_001316329.1:p.Ala258Val, NP_001316330.1:p.Ala239Val

Select item 146869711413.

rs1468697114 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTGTTTTTTT>- [Show Flanks]
Chromosome:: 17:59841187 (GRCh38)
17:57918548 (GRCh37)
Canonical SPDI:: NC_000017.11:59841185:TTTTTGTTTTTTT:T
Gene:: VMP1 (Varview), MIR21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.59841187_59841198del, NC_000017.10:g.57918548_57918559del, NG_051107.1:g.138723_138734del, NM_030938.5:c.*1276_*1287del, NM_030938.4:c.*1276_*1287del, NM_001329394.2:c.*1276_*1287del, NM_001329394.1:c.*1276_*1287del, NM_001329395.2:c.*1276_*1287del, NM_001329395.1:c.*1276_*1287del, NM_001329398.2:c.*1276_*1287del, NM_001329398.1:c.*1276_*1287del, NM_001329399.2:c.*1276_*1287del, NM_001329399.1:c.*1276_*1287del, NM_001329396.2:c.*1276_*1287del, NM_001329396.1:c.*1276_*1287del, NM_001329402.2:c.*1276_*1287del, NM_001329402.1:c.*1276_*1287del, NM_001329397.2:c.*1276_*1287del, NM_001329397.1:c.*1276_*1287del, NM_001329400.2:c.*1276_*1287del, NM_001329400.1:c.*1276_*1287del, NM_001329401.2:c.*1276_*1287del, NM_001329401.1:c.*1276_*1287del

Select item 146662238114.

rs1466622381 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:59839713 (GRCh38)
17:57917074 (GRCh37)
Canonical SPDI:: NC_000017.11:59839712:A:G
Gene:: VMP1 (Varview), MIR21 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000017.11:g.59839713A>G, NC_000017.10:g.57917074A>G, NG_051107.1:g.137249A>G

Select item 146620292415.

rs1466202924 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 17:59841647 (GRCh38)
17:57919008 (GRCh37)
Canonical SPDI:: NC_000017.11:59841646:C:G,NC_000017.11:59841646:C:T
Gene:: VMP1 (Varview), MIR21 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.59841647C>G, NC_000017.11:g.59841647C>T, NC_000017.10:g.57919008C>G, NC_000017.10:g.57919008C>T, NG_051107.1:g.139183C>G, NG_051107.1:g.139183C>T, NM_030938.5:c.*1736C>G, NM_030938.5:c.*1736C>T, NM_030938.4:c.*1736C>G, NM_030938.4:c.*1736C>T, NM_001329394.2:c.*1736C>G, NM_001329394.2:c.*1736C>T, NM_001329394.1:c.*1736C>G, NM_001329394.1:c.*1736C>T, NM_001329395.2:c.*1736C>G, NM_001329395.2:c.*1736C>T, NM_001329395.1:c.*1736C>G, NM_001329395.1:c.*1736C>T, NM_001329398.2:c.*1736C>G, NM_001329398.2:c.*1736C>T, NM_001329398.1:c.*1736C>G, NM_001329398.1:c.*1736C>T, NM_001329399.2:c.*1736C>G, NM_001329399.2:c.*1736C>T, NM_001329399.1:c.*1736C>G, NM_001329399.1:c.*1736C>T, NM_001329396.2:c.*1736C>G, NM_001329396.2:c.*1736C>T, NM_001329396.1:c.*1736C>G, NM_001329396.1:c.*1736C>T, NM_001329402.2:c.*1736C>G, NM_001329402.2:c.*1736C>T, NM_001329402.1:c.*1736C>G, NM_001329402.1:c.*1736C>T, NM_001329397.2:c.*1736C>G, NM_001329397.2:c.*1736C>T, NM_001329397.1:c.*1736C>G, NM_001329397.1:c.*1736C>T, NM_001329400.2:c.*1736C>G, NM_001329400.2:c.*1736C>T, NM_001329400.1:c.*1736C>G, NM_001329400.1:c.*1736C>T, NM_001329401.2:c.*1736C>G, NM_001329401.2:c.*1736C>T, NM_001329401.1:c.*1736C>G, NM_001329401.1:c.*1736C>T

Select item 146522681116.

rs1465226811 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:59840473 (GRCh38)
17:57917834 (GRCh37)
Canonical SPDI:: NC_000017.11:59840472:A:G
Gene:: VMP1 (Varview), MIR21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.59840473A>G, NC_000017.10:g.57917834A>G, NG_051107.1:g.138009A>G, NM_030938.5:c.*562A>G, NM_030938.4:c.*562A>G, NM_030938.3:c.*562A>G, NM_001329394.2:c.*562A>G, NM_001329394.1:c.*562A>G, NM_001329395.2:c.*562A>G, NM_001329395.1:c.*562A>G, NM_001329398.2:c.*562A>G, NM_001329398.1:c.*562A>G, NM_001329399.2:c.*562A>G, NM_001329399.1:c.*562A>G, NM_001329396.2:c.*562A>G, NM_001329396.1:c.*562A>G, NM_001329402.2:c.*562A>G, NM_001329402.1:c.*562A>G, NM_001329397.2:c.*562A>G, NM_001329397.1:c.*562A>G, NM_001329400.2:c.*562A>G, NM_001329400.1:c.*562A>G, NM_001329401.2:c.*562A>G, NM_001329401.1:c.*562A>G

Select item 146477416317.

rs1464774163 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:59841121 (GRCh38)
17:57918482 (GRCh37)
Canonical SPDI:: NC_000017.11:59841120:T:C
Gene:: VMP1 (Varview), MIR21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.59841121T>C, NC_000017.10:g.57918482T>C, NG_051107.1:g.138657T>C, NM_030938.5:c.*1210T>C, NM_030938.4:c.*1210T>C, NM_001329394.2:c.*1210T>C, NM_001329394.1:c.*1210T>C, NM_001329395.2:c.*1210T>C, NM_001329395.1:c.*1210T>C, NM_001329398.2:c.*1210T>C, NM_001329398.1:c.*1210T>C, NM_001329399.2:c.*1210T>C, NM_001329399.1:c.*1210T>C, NM_001329396.2:c.*1210T>C, NM_001329396.1:c.*1210T>C, NM_001329402.2:c.*1210T>C, NM_001329402.1:c.*1210T>C, NM_001329397.2:c.*1210T>C, NM_001329397.1:c.*1210T>C, NM_001329400.2:c.*1210T>C, NM_001329400.1:c.*1210T>C, NM_001329401.2:c.*1210T>C, NM_001329401.1:c.*1210T>C

Select item 146347384718.

rs1463473847 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:59840363 (GRCh38)
17:57917724 (GRCh37)
Canonical SPDI:: NC_000017.11:59840362:T:C
Gene:: VMP1 (Varview), MIR21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000017.11:g.59840363T>C, NC_000017.10:g.57917724T>C, NG_051107.1:g.137899T>C, NM_030938.5:c.*452T>C, NM_030938.4:c.*452T>C, NM_030938.3:c.*452T>C, NM_001329394.2:c.*452T>C, NM_001329394.1:c.*452T>C, NM_001329395.2:c.*452T>C, NM_001329395.1:c.*452T>C, NM_001329398.2:c.*452T>C, NM_001329398.1:c.*452T>C, NM_001329399.2:c.*452T>C, NM_001329399.1:c.*452T>C, NM_001329396.2:c.*452T>C, NM_001329396.1:c.*452T>C, NM_001329402.2:c.*452T>C, NM_001329402.1:c.*452T>C, NM_001329397.2:c.*452T>C, NM_001329397.1:c.*452T>C, NM_001329400.2:c.*452T>C, NM_001329400.1:c.*452T>C, NM_001329401.2:c.*452T>C, NM_001329401.1:c.*452T>C

Select item 146343168319.

rs1463431683 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:59841658 (GRCh38)
17:57919019 (GRCh37)
Canonical SPDI:: NC_000017.11:59841657:T:C
Gene:: VMP1 (Varview), MIR21 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.59841658T>C, NC_000017.10:g.57919019T>C, NG_051107.1:g.139194T>C, NM_030938.5:c.*1747T>C, NM_030938.4:c.*1747T>C, NM_001329394.2:c.*1747T>C, NM_001329394.1:c.*1747T>C, NM_001329395.2:c.*1747T>C, NM_001329395.1:c.*1747T>C, NM_001329398.2:c.*1747T>C, NM_001329398.1:c.*1747T>C, NM_001329399.2:c.*1747T>C, NM_001329399.1:c.*1747T>C, NM_001329396.2:c.*1747T>C, NM_001329396.1:c.*1747T>C, NM_001329402.2:c.*1747T>C, NM_001329402.1:c.*1747T>C, NM_001329397.2:c.*1747T>C, NM_001329397.1:c.*1747T>C, NM_001329400.2:c.*1747T>C, NM_001329400.1:c.*1747T>C, NM_001329401.2:c.*1747T>C, NM_001329401.1:c.*1747T>C

Select item 146115706920.

rs1461157069 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:59839784 (GRCh38)
17:57917145 (GRCh37)
Canonical SPDI:: NC_000017.11:59839783:C:G
Gene:: VMP1 (Varview), MIR21 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.59839784C>G, NC_000017.10:g.57917145C>G, NG_051107.1:g.137320C>G, NM_030938.5:c.1094C>G, NM_030938.4:c.1094C>G, NM_030938.3:c.1094C>G, NM_001329394.2:c.1094C>G, NM_001329394.1:c.1094C>G, NM_001329395.2:c.1133C>G, NM_001329395.1:c.1133C>G, NM_001329398.2:c.842C>G, NM_001329398.1:c.842C>G, NM_001329399.2:c.803C>G, NM_001329399.1:c.803C>G, NM_001329396.2:c.983C>G, NM_001329396.1:c.983C>G, NM_001329402.2:c.518C>G, NM_001329402.1:c.518C>G, NM_001329397.2:c.926C>G, NM_001329397.1:c.926C>G, NM_001329400.2:c.692C>G, NM_001329400.1:c.692C>G, NM_001329401.2:c.635C>G, NM_001329401.1:c.635C>G, NP_112200.2:p.Ser365Cys, NP_001316323.1:p.Ser365Cys, NP_001316324.1:p.Ser378Cys, NP_001316327.1:p.Ser281Cys, NP_001316328.1:p.Ser268Cys, NP_001316325.1:p.Ser328Cys, NP_001316331.1:p.Ser173Cys, NP_001316326.1:p.Ser309Cys, NP_001316329.1:p.Ser231Cys, NP_001316330.1:p.Ser212Cys

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Result Filters

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Additional filters

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Items: 1 to 20 of 529

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