SNP Links for Gene (Select 406984) - SNP

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Select item 14908363561.

rs1490836356 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:1167686 (GRCh38)
1:1103066 (GRCh37)
Canonical SPDI:: NC_000001.11:1167685:G:C
Gene:: MIR200A (Varview), MIR200B (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1167686G>C, NC_000001.10:g.1103066G>C, XR_007065348.1:n.4434G>C

Select item 14899769862.

rs1489976986 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:1165833 (GRCh38)
1:1101213 (GRCh37)
Canonical SPDI:: NC_000001.11:1165832:G:A
Gene:: MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.1165833G>A, NC_000001.10:g.1101213G>A, XR_007065348.1:n.2581G>A

Select item 14895614263.

rs1489561426 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:1165806 (GRCh38)
1:1101186 (GRCh37)
Canonical SPDI:: NC_000001.11:1165805:T:C
Gene:: MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.1165806T>C, NC_000001.10:g.1101186T>C, XR_007065348.1:n.2554T>C

Select item 14876486674.

rs1487648667 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:1167338 (GRCh38)
1:1102718 (GRCh37)
Canonical SPDI:: NC_000001.11:1167337:G:A
Gene:: MIR200A (Varview), MIR200B (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000021/3 (GnomAD)
A=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.1167338G>A, NC_000001.10:g.1102718G>A, XR_007065348.1:n.4086G>A

Select item 14869892345.

rs1486989234 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:1165430 (GRCh38)
1:1100810 (GRCh37)
Canonical SPDI:: NC_000001.11:1165429:G:C
Gene:: MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1165430G>C, NC_000001.10:g.1100810G>C, XR_007065348.1:n.2178G>C

Select item 14869447086.

rs1486944708 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:1165997 (GRCh38)
1:1101377 (GRCh37)
Canonical SPDI:: NC_000001.11:1165996:G:A,NC_000001.11:1165996:G:C
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.1165997G>A, NC_000001.11:g.1165997G>C, NC_000001.10:g.1101377G>A, NC_000001.10:g.1101377G>C, XR_007065348.1:n.2745G>A, XR_007065348.1:n.2745G>C

Select item 14859629707.

rs1485962970 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:1165580 (GRCh38)
1:1100960 (GRCh37)
Canonical SPDI:: NC_000001.11:1165579:C:A
Gene:: MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.1165580C>A, NC_000001.10:g.1100960C>A, XR_007065348.1:n.2328C>A

Select item 14853067368.

rs1485306736 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 1:1166358 (GRCh38)
1:1101739 (GRCh37)
Canonical SPDI:: NC_000001.11:1166358:CCCCCC:CCCCCCC
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCC=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1166364dup, NC_000001.10:g.1101744dup, XR_007065348.1:n.3112dup

Select item 14852309829.

rs1485230982 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GGGGACACTGGCCCCGGGCCC [Show Flanks]
Chromosome:: 1:1165572 (GRCh38)
1:1100953 (GRCh37)
Canonical SPDI:: NC_000001.11:1165572:GGGGACACTGGCCCCGGGCCC:GGGGACACTGGCCCCGGGCCCGGGGACACTGGCCCCGGGCCC
Gene:: MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: GGGGACACTGGCCCCGGGCCCGGGGACACTGGCCCCGGGCCC=0.00007/1 (ALFA)
HGVS:: NC_000001.11:g.1165573_1165593dup, NC_000001.10:g.1100953_1100973dup, XR_007065348.1:n.2321_2341dup

Select item 148152212410.

rs1481522124 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:1165659 (GRCh38)
1:1101039 (GRCh37)
Canonical SPDI:: NC_000001.11:1165658:G:C
Gene:: MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.1165659G>C, NC_000001.10:g.1101039G>C, XR_007065348.1:n.2407G>C

Select item 148125670711.

rs1481256707 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:1167624 (GRCh38)
1:1103004 (GRCh37)
Canonical SPDI:: NC_000001.11:1167623:A:C
Gene:: MIR200A (Varview), MIR200B (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1167624A>C, NC_000001.10:g.1103004A>C, XR_007065348.1:n.4372A>C

Select item 148014740712.

rs1480147407 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:1167206 (GRCh38)
1:1102586 (GRCh37)
Canonical SPDI:: NC_000001.11:1167205:C:G,NC_000001.11:1167205:C:T
Gene:: MIR200A (Varview), MIR200B (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000028/1 (ALFA)
T=0.000041/9 (GnomAD_exomes)
HGVS:: NC_000001.11:g.1167206C>G, NC_000001.11:g.1167206C>T, NC_000001.10:g.1102586C>G, NC_000001.10:g.1102586C>T, XR_007065348.1:n.3954C>G, XR_007065348.1:n.3954C>T

Select item 147908400713.

rs1479084007 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:1165622 (GRCh38)
1:1101002 (GRCh37)
Canonical SPDI:: NC_000001.11:1165621:C:T
Gene:: MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000038/10 (TOPMED)
T=0.000071/10 (GnomAD)
HGVS:: NC_000001.11:g.1165622C>T, NC_000001.10:g.1101002C>T, XR_007065348.1:n.2370C>T

Select item 147894073814.

rs1478940738 has merged into rs1307252866 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>-,CC [Show Flanks]
Chromosome:: 1:1167042 (GRCh38)
1:1102422 (GRCh37)
Canonical SPDI:: NC_000001.11:1167041:CCCCCC:CCCCC,NC_000001.11:1167041:CCCCCC:CCCCCCC
Gene:: MIR200A (Varview), MIR200B (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCC=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.1167047del, NC_000001.11:g.1167047dup, NC_000001.10:g.1102427del, NC_000001.10:g.1102427dup, XR_007065348.1:n.3795del, XR_007065348.1:n.3795dup

Select item 147814396315.

rs1478143963 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 1:1166552 (GRCh38)
1:1101932 (GRCh37)
Canonical SPDI:: NC_000001.11:1166551:T:A,NC_000001.11:1166551:T:C
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.0164/45 (KOREAN)
HGVS:: NC_000001.11:g.1166552T>A, NC_000001.11:g.1166552T>C, NC_000001.10:g.1101932T>A, NC_000001.10:g.1101932T>C, XR_007065348.1:n.3300T>A, XR_007065348.1:n.3300T>C

Select item 147669668216.

rs1476696682 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTCGGCCCCCCAGGTGCCCACCCCAGGAC>- [Show Flanks]
Chromosome:: 1:1166912 (GRCh38)
1:1102292 (GRCh37)
Canonical SPDI:: NC_000001.11:1166909:ACTTCGGCCCCCCAGGTGCCCACCCCAGGAC:AC
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.1166912_1166940del, NC_000001.10:g.1102292_1102320del, XR_007065348.1:n.3660_3688del

Select item 147484196317.

rs1474841963 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:1165366 (GRCh38)
1:1100746 (GRCh37)
Canonical SPDI:: NC_000001.11:1165365:G:T
Gene:: MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.1165366G>T, NC_000001.10:g.1100746G>T, XR_007065348.1:n.2114G>T

Select item 147472745018.

rs1474727450 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:1166298 (GRCh38)
1:1101678 (GRCh37)
Canonical SPDI:: NC_000001.11:1166297:C:T
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1166298C>T, NC_000001.10:g.1101678C>T, XR_007065348.1:n.3046C>T

Select item 147437860019.

rs1474378600 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:1166398 (GRCh38)
1:1101778 (GRCh37)
Canonical SPDI:: NC_000001.11:1166397:G:A
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000042/11 (TOPMED)
A=0.00005/7 (GnomAD)
HGVS:: NC_000001.11:g.1166398G>A, NC_000001.10:g.1101778G>A, XR_007065348.1:n.3146G>A

Select item 146906601520.

rs1469066015 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:1165318 (GRCh38)
1:1100698 (GRCh37)
Canonical SPDI:: NC_000001.11:1165317:C:G,NC_000001.11:1165317:C:T
Gene:: MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.1165318C>G, NC_000001.11:g.1165318C>T, NC_000001.10:g.1100698C>G, NC_000001.10:g.1100698C>T, XR_007065348.1:n.2066C>G, XR_007065348.1:n.2066C>T

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