SNP Links for Gene (Select 406983) - SNP

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Select item 14908363561.

rs1490836356 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:1167686 (GRCh38)
1:1103066 (GRCh37)
Canonical SPDI:: NC_000001.11:1167685:G:C
Gene:: MIR200A (Varview), MIR200B (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1167686G>C, NC_000001.10:g.1103066G>C, XR_007065348.1:n.4434G>C

Select item 14907855112.

rs1490785511 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:1168323 (GRCh38)
1:1103703 (GRCh37)
Canonical SPDI:: NC_000001.11:1168322:C:A,NC_000001.11:1168322:C:T
Gene:: MIR200A (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.1168323C>A, NC_000001.11:g.1168323C>T, NC_000001.10:g.1103703C>A, NC_000001.10:g.1103703C>T, XR_007065348.1:n.5071C>A, XR_007065348.1:n.5071C>T

Select item 14876486673.

rs1487648667 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:1167338 (GRCh38)
1:1102718 (GRCh37)
Canonical SPDI:: NC_000001.11:1167337:G:A
Gene:: MIR200A (Varview), MIR200B (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000021/3 (GnomAD)
A=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.1167338G>A, NC_000001.10:g.1102718G>A, XR_007065348.1:n.4086G>A

Select item 14869447084.

rs1486944708 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:1165997 (GRCh38)
1:1101377 (GRCh37)
Canonical SPDI:: NC_000001.11:1165996:G:A,NC_000001.11:1165996:G:C
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.1165997G>A, NC_000001.11:g.1165997G>C, NC_000001.10:g.1101377G>A, NC_000001.10:g.1101377G>C, XR_007065348.1:n.2745G>A, XR_007065348.1:n.2745G>C

Select item 14853067365.

rs1485306736 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 1:1166358 (GRCh38)
1:1101739 (GRCh37)
Canonical SPDI:: NC_000001.11:1166358:CCCCCC:CCCCCCC
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCC=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1166364dup, NC_000001.10:g.1101744dup, XR_007065348.1:n.3112dup

Select item 14812567076.

rs1481256707 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:1167624 (GRCh38)
1:1103004 (GRCh37)
Canonical SPDI:: NC_000001.11:1167623:A:C
Gene:: MIR200A (Varview), MIR200B (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1167624A>C, NC_000001.10:g.1103004A>C, XR_007065348.1:n.4372A>C

Select item 14812525847.

rs1481252584 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:1168254 (GRCh38)
1:1103634 (GRCh37)
Canonical SPDI:: NC_000001.11:1168253:T:G
Gene:: MIR200A (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1168254T>G, NC_000001.10:g.1103634T>G, XR_007065348.1:n.5002T>G

Select item 14801474078.

rs1480147407 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:1167206 (GRCh38)
1:1102586 (GRCh37)
Canonical SPDI:: NC_000001.11:1167205:C:G,NC_000001.11:1167205:C:T
Gene:: MIR200A (Varview), MIR200B (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000028/1 (ALFA)
T=0.000041/9 (GnomAD_exomes)
HGVS:: NC_000001.11:g.1167206C>G, NC_000001.11:g.1167206C>T, NC_000001.10:g.1102586C>G, NC_000001.10:g.1102586C>T, XR_007065348.1:n.3954C>G, XR_007065348.1:n.3954C>T

Select item 14789407389.

rs1478940738 has merged into rs1307252866 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>-,CC [Show Flanks]
Chromosome:: 1:1167042 (GRCh38)
1:1102422 (GRCh37)
Canonical SPDI:: NC_000001.11:1167041:CCCCCC:CCCCC,NC_000001.11:1167041:CCCCCC:CCCCCCC
Gene:: MIR200A (Varview), MIR200B (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCC=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.1167047del, NC_000001.11:g.1167047dup, NC_000001.10:g.1102427del, NC_000001.10:g.1102427dup, XR_007065348.1:n.3795del, XR_007065348.1:n.3795dup

Select item 147864235410.

rs1478642354 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:1167953 (GRCh38)
1:1103333 (GRCh37)
Canonical SPDI:: NC_000001.11:1167952:C:T
Gene:: MIR200A (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.00002/4 (GnomAD_exomes)
HGVS:: NC_000001.11:g.1167953C>T, NC_000001.10:g.1103333C>T, XR_007065348.1:n.4701C>T

Select item 147814396311.

rs1478143963 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 1:1166552 (GRCh38)
1:1101932 (GRCh37)
Canonical SPDI:: NC_000001.11:1166551:T:A,NC_000001.11:1166551:T:C
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.0164/45 (KOREAN)
HGVS:: NC_000001.11:g.1166552T>A, NC_000001.11:g.1166552T>C, NC_000001.10:g.1101932T>A, NC_000001.10:g.1101932T>C, XR_007065348.1:n.3300T>A, XR_007065348.1:n.3300T>C

Select item 147669668212.

rs1476696682 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTCGGCCCCCCAGGTGCCCACCCCAGGAC>- [Show Flanks]
Chromosome:: 1:1166912 (GRCh38)
1:1102292 (GRCh37)
Canonical SPDI:: NC_000001.11:1166909:ACTTCGGCCCCCCAGGTGCCCACCCCAGGAC:AC
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.1166912_1166940del, NC_000001.10:g.1102292_1102320del, XR_007065348.1:n.3660_3688del

Select item 147662169513.

rs1476621695 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:1167704 (GRCh38)
1:1103084 (GRCh37)
Canonical SPDI:: NC_000001.11:1167703:G:A
Gene:: MIR200A (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1167704G>A, NC_000001.10:g.1103084G>A, XR_007065348.1:n.4452G>A

Select item 147472745014.

rs1474727450 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:1166298 (GRCh38)
1:1101678 (GRCh37)
Canonical SPDI:: NC_000001.11:1166297:C:T
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.1166298C>T, NC_000001.10:g.1101678C>T, XR_007065348.1:n.3046C>T

Select item 147437860015.

rs1474378600 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:1166398 (GRCh38)
1:1101778 (GRCh37)
Canonical SPDI:: NC_000001.11:1166397:G:A
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000042/11 (TOPMED)
A=0.00005/7 (GnomAD)
HGVS:: NC_000001.11:g.1166398G>A, NC_000001.10:g.1101778G>A, XR_007065348.1:n.3146G>A

Select item 147410538716.

rs1474105387 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:1168342 (GRCh38)
1:1103722 (GRCh37)
Canonical SPDI:: NC_000001.11:1168341:G:A
Gene:: MIR200A (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant,downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.1168342G>A, NC_000001.10:g.1103722G>A, XR_007065348.1:n.5090G>A

Select item 147378523717.

rs1473785237 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AGC [Show Flanks]
Chromosome:: 1:1167823 (GRCh38)
1:1103204 (GRCh37)
Canonical SPDI:: NC_000001.11:1167823:CAGCAGC:CAGCAGCAGC
Gene:: MIR200A (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
HGVS:: NC_000001.11:g.1167825AGC[3], NC_000001.10:g.1103205AGC[3], XR_007065348.1:n.4573AGC[3]

Select item 147063746118.

rs1470637461 has merged into rs1049032198 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 1:1168194 (GRCh38)
1:1103574 (GRCh37)
Canonical SPDI:: NC_000001.11:1168193:GGGGG:GGGG,NC_000001.11:1168193:GGGGG:GGGGGG
Gene:: MIR200A (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGG=0./0 (ALFA)
-=0.00031/2 (1000Genomes)
HGVS:: NC_000001.11:g.1168198del, NC_000001.11:g.1168198dup, NC_000001.10:g.1103578del, NC_000001.10:g.1103578dup, XR_007065348.1:n.4946del, XR_007065348.1:n.4946dup

Select item 147035245419.

rs1470352454 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 1:1168237 (GRCh38)
1:1103617 (GRCh37)
Canonical SPDI:: NC_000001.11:1168236:CC:C
Gene:: MIR200A (Varview), MIR429 (Varview), LOC124903818 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant,downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.1168238del, NC_000001.10:g.1103618del, XR_007065348.1:n.4986del

Select item 146805109820.

rs1468051098 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:1166832 (GRCh38)
1:1102212 (GRCh37)
Canonical SPDI:: NC_000001.11:1166831:G:C
Gene:: MIR200A (Varview), MIR200B (Varview), LOC124903818 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000026/7 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.1166832G>C, NC_000001.10:g.1102212G>C, XR_007065348.1:n.3580G>C

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