SNP Links for Gene (Select 406931) - SNP

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Links from Gene

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Select item 14901290861.

rs1490129086 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:72615381 (GRCh38)
11:72326425 (GRCh37)
Canonical SPDI:: NC_000011.10:72615380:G:A
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.72615381G>A, NC_000011.9:g.72326425G>A

Select item 14866288662.

rs1486628866 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:72614777 (GRCh38)
11:72325821 (GRCh37)
Canonical SPDI:: NC_000011.10:72614776:G:A
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.72614777G>A, NC_000011.9:g.72325821G>A, XR_007062770.1:n.496G>A

Select item 14863226323.

rs1486322632 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:72615232 (GRCh38)
11:72326276 (GRCh37)
Canonical SPDI:: NC_000011.10:72615231:G:A
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000034/9 (TOPMED)
HGVS:: NC_000011.10:g.72615232G>A, NC_000011.9:g.72326276G>A

Select item 14862438444.

rs1486243844 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:72615105 (GRCh38)
11:72326149 (GRCh37)
Canonical SPDI:: NC_000011.10:72615104:G:A
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.72615105G>A, NC_000011.9:g.72326149G>A, NR_029603.1:n.26C>T

Select item 14855921035.

rs1485592103 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:72615907 (GRCh38)
11:72326951 (GRCh37)
Canonical SPDI:: NC_000011.10:72615906:G:A
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (GnomAD)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.72615907G>A, NC_000011.9:g.72326951G>A

Select item 14842509936.

rs1484250993 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 11:72615833 (GRCh38)
11:72326878 (GRCh37)
Canonical SPDI:: NC_000011.10:72615833:AA:AAA
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AAA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.72615835dup, NC_000011.9:g.72326879dup

Select item 14819476037.

rs1481947603 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:72614947 (GRCh38)
11:72325991 (GRCh37)
Canonical SPDI:: NC_000011.10:72614946:G:A,NC_000011.10:72614946:G:C
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.72614947G>A, NC_000011.10:g.72614947G>C, NC_000011.9:g.72325991G>A, NC_000011.9:g.72325991G>C

Select item 14790005268.

rs1479000526 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 11:72616089 (GRCh38)
11:72327133 (GRCh37)
Canonical SPDI:: NC_000011.10:72616088:G:A,NC_000011.10:72616088:G:C
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00007/1 (TOMMO)
HGVS:: NC_000011.10:g.72616089G>A, NC_000011.10:g.72616089G>C, NC_000011.9:g.72327133G>A, NC_000011.9:g.72327133G>C

Select item 14789162419.

rs1478916241 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:72616824 (GRCh38)
11:72327868 (GRCh37)
Canonical SPDI:: NC_000011.10:72616823:C:T
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.72616824C>T, NC_000011.9:g.72327868C>T

Select item 147818267210.

rs1478182672 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:72616450 (GRCh38)
11:72327494 (GRCh37)
Canonical SPDI:: NC_000011.10:72616449:C:G
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.72616450C>G, NC_000011.9:g.72327494C>G

Select item 147813657611.

rs1478136576 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:72615495 (GRCh38)
11:72326539 (GRCh37)
Canonical SPDI:: NC_000011.10:72615494:G:T
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.72615495G>T, NC_000011.9:g.72326539G>T

Select item 147764443412.

rs1477644434 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:72614639 (GRCh38)
11:72325683 (GRCh37)
Canonical SPDI:: NC_000011.10:72614638:T:A
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.72614639T>A, NC_000011.9:g.72325683T>A, XR_001748292.2:n.358T>A, XR_001748292.1:n.1589T>A, XR_007062770.1:n.358T>A

Select item 147564478213.

rs1475644782 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:72614960 (GRCh38)
11:72326004 (GRCh37)
Canonical SPDI:: NC_000011.10:72614959:C:G,NC_000011.10:72614959:C:T
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000054/1 (ALFA)
G=0.000036/5 (GnomAD)
G=0.000156/1 (1000Genomes)
G=0.000223/1 (Estonian)
HGVS:: NC_000011.10:g.72614960C>G, NC_000011.10:g.72614960C>T, NC_000011.9:g.72326004C>G, NC_000011.9:g.72326004C>T

Select item 147011287914.

rs1470112879 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:72615154 (GRCh38)
11:72326198 (GRCh37)
Canonical SPDI:: NC_000011.10:72615153:A:G
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.72615154A>G, NC_000011.9:g.72326198A>G

Select item 146911199015.

rs1469111990 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:72616442 (GRCh38)
11:72327486 (GRCh37)
Canonical SPDI:: NC_000011.10:72616441:G:C
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.72616442G>C, NC_000011.9:g.72327486G>C

Select item 146771388316.

rs1467713883 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 11:72614594 (GRCh38)
11:72325638 (GRCh37)
Canonical SPDI:: NC_000011.10:72614593:G:A,NC_000011.10:72614593:G:T
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.72614594G>A, NC_000011.10:g.72614594G>T, NC_000011.9:g.72325638G>A, NC_000011.9:g.72325638G>T

Select item 146525890017.

rs1465258900 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:72616053 (GRCh38)
11:72327097 (GRCh37)
Canonical SPDI:: NC_000011.10:72616052:G:A
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.72616053G>A, NC_000011.9:g.72327097G>A

Select item 146487860718.

rs1464878607 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:72615986 (GRCh38)
11:72327030 (GRCh37)
Canonical SPDI:: NC_000011.10:72615985:G:A
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.72615986G>A, NC_000011.9:g.72327030G>A

Select item 146485796819.

rs1464857968 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:72615597 (GRCh38)
11:72326641 (GRCh37)
Canonical SPDI:: NC_000011.10:72615596:A:C
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00006/1 (TOMMO)
C=0.00218/4 (Korea1K)
HGVS:: NC_000011.10:g.72615597A>C, NC_000011.9:g.72326641A>C

Select item 146470595020.

rs1464705950 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:72617046 (GRCh38)
11:72328090 (GRCh37)
Canonical SPDI:: NC_000011.10:72617045:C:A
Gene:: PDE2A (Varview), MIR139 (Varview), LOC105369377 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.72617046C>A, NC_000011.9:g.72328090C>A

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