SNP Links for Gene (Select 4064) - SNP

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Select item 14915108241.

rs1491510824 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TA [Show Flanks]
Chromosome:: 5:67185287 (GRCh38)
5:66481116 (GRCh37)
Canonical SPDI:: NC_000005.10:67185287:TA:TATA
Gene:: CD180 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATA=0./0 (ALFA)
TA=0.000004/1 (TOPMED)
TA=0.000025/1 (GnomAD)
HGVS:: NC_000005.10:g.67185288_67185289dup, NC_000005.9:g.66481116_66481117dup

Select item 14912334202.

rs1491233420 [Homo sapiens]

Variant type:: DELINS
Alleles:: GC>- [Show Flanks]
Chromosome:: 5:67185329 (GRCh38)
5:66481157 (GRCh37)
Canonical SPDI:: NC_000005.10:67185327:CGC:C
Gene:: CD180 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.023773/282 (ALFA)
-=0.008333/5 (NorthernSweden)
-=0.025/1 (GENOME_DK)
-=0.025947/100 (ALSPAC)
-=0.032093/119 (TWINSUK)
-=0.034086/4483 (GnomAD)
-=0.166302/304 (Korea1K)
-=0.178093/2981 (TOMMO)
HGVS:: NC_000005.10:g.67185329_67185330del, NC_000005.9:g.66481157_66481158del

Select item 14905627403.

rs1490562740 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 5:67186677 (GRCh38)
5:66482505 (GRCh37)
Canonical SPDI:: NC_000005.10:67186676:A:C
Gene:: CD180 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000094/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.67186677A>C, NC_000005.9:g.66482505A>C

Select item 14905408874.

rs1490540887 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:67193655 (GRCh38)
5:66489483 (GRCh37)
Canonical SPDI:: NC_000005.10:67193654:T:C
Gene:: CD180 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.67193655T>C, NC_000005.9:g.66489483T>C

Select item 14899334755.

rs1489933475 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:67186838 (GRCh38)
5:66482666 (GRCh37)
Canonical SPDI:: NC_000005.10:67186837:T:C
Gene:: CD180 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000016/2 (GnomAD)
HGVS:: NC_000005.10:g.67186838T>C, NC_000005.9:g.66482666T>C

Select item 14892898676.

rs1489289867 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:67195666 (GRCh38)
5:66491494 (GRCh37)
Canonical SPDI:: NC_000005.10:67195665:C:T
Gene:: CD180 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000005.10:g.67195666C>T, NC_000005.9:g.66491494C>T

Select item 14892286277.

rs1489228627 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 5:67190822 (GRCh38)
5:66486650 (GRCh37)
Canonical SPDI:: NC_000005.10:67190821:CCC:CC
Gene:: CD180 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000019/5 (TOPMED)
HGVS:: NC_000005.10:g.67190824del, NC_000005.9:g.66486652del

Select item 14890943988.

rs1489094398 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 5:67186964 (GRCh38)
5:66482792 (GRCh37)
Canonical SPDI:: NC_000005.10:67186963:C:A,NC_000005.10:67186963:C:T
Gene:: CD180 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.67186964C>A, NC_000005.10:g.67186964C>T, NC_000005.9:g.66482792C>A, NC_000005.9:g.66482792C>T

Select item 14890404119.

rs1489040411 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:67190295 (GRCh38)
5:66486123 (GRCh37)
Canonical SPDI:: NC_000005.10:67190294:C:G
Gene:: CD180 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.67190295C>G, NC_000005.9:g.66486123C>G

Select item 148899316110.

rs1488993161 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 5:67191867 (GRCh38)
5:66487695 (GRCh37)
Canonical SPDI:: NC_000005.10:67191866:AAAAA:AAAA
Gene:: CD180 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AAAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.67191871del, NC_000005.9:g.66487699del

Select item 148892354111.

rs1488923541 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:67195805 (GRCh38)
5:66491633 (GRCh37)
Canonical SPDI:: NC_000005.10:67195804:C:A
Gene:: CD180 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.67195805C>A, NC_000005.9:g.66491633C>A

Select item 148884832312.

rs1488848323 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:67191970 (GRCh38)
5:66487798 (GRCh37)
Canonical SPDI:: NC_000005.10:67191969:C:G
Gene:: CD180 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.67191970C>G, NC_000005.9:g.66487798C>G

Select item 148883831813.

rs1488838318 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:67188068 (GRCh38)
5:66483896 (GRCh37)
Canonical SPDI:: NC_000005.10:67188067:G:T
Gene:: CD180 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.67188068G>T, NC_000005.9:g.66483896G>T

Select item 148875189514.

rs1488751895 has merged into rs1324771100 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTTT>-,CTTTTCTTTT [Show Flanks]
Chromosome:: 5:67182321 (GRCh38)
5:66478149 (GRCh37)
Canonical SPDI:: NC_000005.10:67182310:CTTTTCTTTTCTTTT:CTTTTCTTTT,NC_000005.10:67182310:CTTTTCTTTTCTTTT:CTTTTCTTTTCTTTTCTTTT
Gene:: CD180 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTTTTCTTTTCTTTTCTTTT=0./0 (ALFA)
-=0.000043/6 (GnomAD)
-=0.000318/5 (TOMMO)
HGVS:: NC_000005.10:g.67182311CTTTT[2], NC_000005.10:g.67182311CTTTT[4], NC_000005.9:g.66478139CTTTT[2], NC_000005.9:g.66478139CTTTT[4], XM_005248504.5:c.*532AAAAG[2], XM_005248504.5:c.*532AAAAG[4], XM_005248504.4:c.*532AAAAG[2], XM_005248504.4:c.*532AAAAG[4], XM_005248504.3:c.*532AAAAG[2], XM_005248504.3:c.*532AAAAG[4], XM_005248504.2:c.*532AAAAG[2], XM_005248504.2:c.*532AAAAG[4], XM_005248504.1:c.*532AAAAG[2], XM_005248504.1:c.*532AAAAG[4], NM_005582.3:c.*532AAAAG[2], NM_005582.3:c.*532AAAAG[4], NM_005582.2:c.*532AAAAG[2], NM_005582.2:c.*532AAAAG[4], XM_047417178.1:c.*532AAAAG[2], XM_047417178.1:c.*532AAAAG[4]

Select item 148874029315.

rs1488740293 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:67184552 (GRCh38)
5:66480380 (GRCh37)
Canonical SPDI:: NC_000005.10:67184551:A:G
Gene:: CD180 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.67184552A>G, NC_000005.9:g.66480380A>G, XM_005248504.5:c.252T>C, XM_005248504.4:c.252T>C, XM_005248504.3:c.252T>C, XM_005248504.2:c.252T>C, XM_005248504.1:c.252T>C, NM_005582.3:c.291T>C, NM_005582.2:c.291T>C, XM_047417178.1:c.252T>C

Select item 148837282216.

rs1488372822 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:67187069 (GRCh38)
5:66482897 (GRCh37)
Canonical SPDI:: NC_000005.10:67187068:T:C
Gene:: CD180 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000312/2 (1000Genomes)
HGVS:: NC_000005.10:g.67187069T>C, NC_000005.9:g.66482897T>C

Select item 148834122117.

rs1488341221 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:67195103 (GRCh38)
5:66490931 (GRCh37)
Canonical SPDI:: NC_000005.10:67195102:C:T
Gene:: CD180 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.67195103C>T, NC_000005.9:g.66490931C>T

Select item 148783233418.

rs1487832334 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTCTATACAAATTAC>- [Show Flanks]
Chromosome:: 5:67188332 (GRCh38)
5:66484160 (GRCh37)
Canonical SPDI:: NC_000005.10:67188324:AAATTACTTTTCTATACAAATTAC:AAATTAC
Gene:: CD180 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAATTAC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.67188332_67188348del, NC_000005.9:g.66484160_66484176del

Select item 148767420919.

rs1487674209 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:67197066 (GRCh38)
5:66492894 (GRCh37)
Canonical SPDI:: NC_000005.10:67197065:A:G
Gene:: CD180 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
HGVS:: NC_000005.10:g.67197066A>G, NC_000005.9:g.66492894A>G

Select item 148755872320.

rs1487558723 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:67195710 (GRCh38)
5:66491538 (GRCh37)
Canonical SPDI:: NC_000005.10:67195709:T:C
Gene:: CD180 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000042/11 (TOPMED)
C=0.000043/6 (GnomAD)
HGVS:: NC_000005.10:g.67195710T>C, NC_000005.9:g.66491538T>C

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