SNP Links for Gene (Select 400696) - SNP

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Links from Gene

Items: 1 to 20 of 2090

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Select item 14907905691.

rs1490790569 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 19:39682730 (GRCh38)
19:40173370 (GRCh37)
Canonical SPDI:: NC_000019.10:39682729:GGGG:GGG
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.39682733del, NC_000019.9:g.40173373del

Select item 14907343952.

rs1490734395 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:39683631 (GRCh38)
19:40174271 (GRCh37)
Canonical SPDI:: NC_000019.10:39683630:G:A
Gene:: LGALS17A (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.39683631G>A, NC_000019.9:g.40174271G>A, NM_207646.2:c.448G>A, NR_034156.1:n.494G>A, NM_207646.1:c.448G>A

Select item 14905155063.

rs1490515506 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:39685653 (GRCh38)
19:40176293 (GRCh37)
Canonical SPDI:: NC_000019.10:39685652:G:C
Gene:: LGALS17A (Varview)
Functional Consequence:: splice_donor_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39685653G>C, NC_000019.9:g.40176293G>C, NM_207646.2:c.*2014G>C

Select item 14896900554.

rs1489690055 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:39681800 (GRCh38)
19:40172440 (GRCh37)
Canonical SPDI:: NC_000019.10:39681799:G:C
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39681800G>C, NC_000019.9:g.40172440G>C

Select item 14896348055.

rs1489634805 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTC>- [Show Flanks]
Chromosome:: 19:39686563 (GRCh38)
19:40177203 (GRCh37)
Canonical SPDI:: NC_000019.10:39686559:CTCCTC:CTC
Gene:: LGALS17A (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCCTC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.39686560CTC[1], NC_000019.9:g.40177200CTC[1]

Select item 14896022546.

rs1489602254 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 19:39684490 (GRCh38)
19:40175130 (GRCh37)
Canonical SPDI:: NC_000019.10:39684487:CACA:CA
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CACA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.39684488CA[1], NC_000019.9:g.40175128CA[1], NM_207646.2:c.*849CA[1], NM_207646.1:c.*849CA[1]

Select item 14885305867.

rs1488530586 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:39681785 (GRCh38)
19:40172425 (GRCh37)
Canonical SPDI:: NC_000019.10:39681784:C:A
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00007/1 (ALFA)
HGVS:: NC_000019.10:g.39681785C>A, NC_000019.9:g.40172425C>A

Select item 14884801468.

rs1488480146 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 19:39680852 (GRCh38)
19:40171492 (GRCh37)
Canonical SPDI:: NC_000019.10:39680851:A:T
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.39680852A>T, NC_000019.9:g.40171492A>T

Select item 14884617759.

rs1488461775 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:39677733 (GRCh38)
19:40168373 (GRCh37)
Canonical SPDI:: NC_000019.10:39677732:G:A
Gene:: LGALS17A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.39677733G>A, NC_000019.9:g.40168373G>A

Select item 148823609210.

rs1488236092 [Homo sapiens]

Variant type:: DEL
Alleles:: TGCAG>- [Show Flanks]
Chromosome:: 19:39681622 (GRCh38)
19:40172262 (GRCh37)
Canonical SPDI:: NC_000019.10:39681621:TGCAG:
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.39681622_39681626del, NC_000019.9:g.40172262_40172266del

Select item 148811511711.

rs1488115117 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:39686214 (GRCh38)
19:40176854 (GRCh37)
Canonical SPDI:: NC_000019.10:39686213:C:G
Gene:: LGALS17A (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39686214C>G, NC_000019.9:g.40176854C>G, NR_034156.1:n.971C>G, NM_207646.1:c.*1906C>G

Select item 148809417212.

rs1488094172 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:39683240 (GRCh38)
19:40173880 (GRCh37)
Canonical SPDI:: NC_000019.10:39683239:T:C
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000009/1 (GnomAD)
HGVS:: NC_000019.10:g.39683240T>C, NC_000019.9:g.40173880T>C

Select item 148690153813.

rs1486901538 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:39678627 (GRCh38)
19:40169267 (GRCh37)
Canonical SPDI:: NC_000019.10:39678626:G:A
Gene:: LGALS17A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000142/2 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000036/5 (GnomAD)
HGVS:: NC_000019.10:g.39678627G>A, NC_000019.9:g.40169267G>A

Select item 148685221814.

rs1486852218 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:39683274 (GRCh38)
19:40173914 (GRCh37)
Canonical SPDI:: NC_000019.10:39683273:G:T
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.00055/9 (ALFA)
T=0.00179/8 (Estonian)
HGVS:: NC_000019.10:g.39683274G>T, NC_000019.9:g.40173914G>T

Select item 148611886715.

rs1486118867 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 19:39680024 (GRCh38)
19:40170664 (GRCh37)
Canonical SPDI:: NC_000019.10:39680023:CCC:CC
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000026/7 (TOPMED)
-=0.000106/2 (TOMMO)
HGVS:: NC_000019.10:g.39680026del, NC_000019.9:g.40170666del

Select item 148601665216.

rs1486016652 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:39684514 (GRCh38)
19:40175154 (GRCh37)
Canonical SPDI:: NC_000019.10:39684513:A:G
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39684514A>G, NC_000019.9:g.40175154A>G, NM_207646.2:c.*875A>G, NM_207646.1:c.*875A>G

Select item 148566695217.

rs1485666952 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:39680257 (GRCh38)
19:40170897 (GRCh37)
Canonical SPDI:: NC_000019.10:39680256:C:T
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.39680257C>T, NC_000019.9:g.40170897C>T

Select item 148561256718.

rs1485612567 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 19:39684160 (GRCh38)
19:40174800 (GRCh37)
Canonical SPDI:: NC_000019.10:39684159:A:T
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000546/1 (Korea1K)
HGVS:: NC_000019.10:g.39684160A>T, NC_000019.9:g.40174800A>T, NM_207646.2:c.*521A>T, NM_207646.1:c.*521A>T

Select item 148552443619.

rs1485524436 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:39678079 (GRCh38)
19:40168719 (GRCh37)
Canonical SPDI:: NC_000019.10:39678078:C:T
Gene:: LGALS17A (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000019.10:g.39678079C>T, NC_000019.9:g.40168719C>T, NG_075065.1:g.251C>T

Select item 148531602520.

rs1485316025 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:39680115 (GRCh38)
19:40170755 (GRCh37)
Canonical SPDI:: NC_000019.10:39680114:C:A
Gene:: LGALS17A (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.39680115C>A, NC_000019.9:g.40170755C>A

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