SNP Links for Gene (Select 392196) - SNP

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Select item 14910844631.

rs1491084463 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 8:12130278 (GRCh38)
8:11987787 (GRCh37)
Canonical SPDI:: NC_000008.11:12130276:AGA:A
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000008.11:g.12130278_12130279del, NC_000008.10:g.11987787_11987788del

Select item 14908418392.

rs1490841839 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 8:12130156 (GRCh38)
8:11987665 (GRCh37)
Canonical SPDI:: NC_000008.11:12130155:G:T
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000008.11:g.12130156G>T, NC_000008.10:g.11987665G>T

Select item 14907569063.

rs1490756906 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 8:12129020 (GRCh38)
8:11986529 (GRCh37)
Canonical SPDI:: NC_000008.11:12129019:G:A
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000261/35 (GnomAD)
HGVS:: NC_000008.11:g.12129020G>A, NC_000008.10:g.11986529G>A, NR_003275.2:n.278C>T

Select item 14905392254.

rs1490539225 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 8:12127510 (GRCh38)
8:11985019 (GRCh37)
Canonical SPDI:: NC_000008.11:12127509:T:A
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00031/2 (1000Genomes)
A=0.00038/1 (KOREAN)
A=0.00066/9 (TOMMO)
A=0.00182/3 (Korea1K)
HGVS:: NC_000008.11:g.12127510T>A, NC_000008.10:g.11985019T>A

Select item 14903531295.

rs1490353129 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:12129923 (GRCh38)
8:11987432 (GRCh37)
Canonical SPDI:: NC_000008.11:12129922:C:T
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000084/1 (ALFA)
T=0.000015/2 (GnomAD)
T=0.000123/2 (TOMMO)
T=0.000382/1 (KOREAN)
HGVS:: NC_000008.11:g.12129923C>T, NC_000008.10:g.11987432C>T

Select item 14902084636.

rs1490208463 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 8:12128514 (GRCh38)
8:11986023 (GRCh37)
Canonical SPDI:: NC_000008.11:12128513:C:A,NC_000008.11:12128513:C:T
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.000041/1 (TOMMO)
T=0.000045/6 (GnomAD)
HGVS:: NC_000008.11:g.12128514C>A, NC_000008.11:g.12128514C>T, NC_000008.10:g.11986023C>A, NC_000008.10:g.11986023C>T, NR_003275.2:n.784G>T, NR_003275.2:n.784G>A

Select item 14889527997.

rs1488952799 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 8:12129540 (GRCh38)
8:11987049 (GRCh37)
Canonical SPDI:: NC_000008.11:12129539:A:G
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000008.11:g.12129540A>G, NC_000008.10:g.11987049A>G

Select item 14887013378.

rs1488701337 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 8:12129377 (GRCh38)
8:11986886 (GRCh37)
Canonical SPDI:: NC_000008.11:12129376:T:C
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000038/10 (TOPMED)
HGVS:: NC_000008.11:g.12129377T>C, NC_000008.10:g.11986886T>C

Select item 14883364619.

rs1488336461 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 8:12128930 (GRCh38)
8:11986439 (GRCh37)
Canonical SPDI:: NC_000008.11:12128929:C:G
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000037/5 (GnomAD)
HGVS:: NC_000008.11:g.12128930C>G, NC_000008.10:g.11986439C>G, NR_003275.2:n.368G>C

Select item 148817135710.

rs1488171357 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 8:12127415 (GRCh38)
8:11984924 (GRCh37)
Canonical SPDI:: NC_000008.11:12127414:G:A,NC_000008.11:12127414:G:T
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.003812/44 (ALFA)
T=0.001145/3 (KOREAN)
T=0.019636/2574 (GnomAD)
T=0.02436/156 (1000Genomes)
G=0.428571/6 (SGDP_PRJ)
HGVS:: NC_000008.11:g.12127415G>A, NC_000008.11:g.12127415G>T, NC_000008.10:g.11984924G>A, NC_000008.10:g.11984924G>T

Select item 148808561411.

rs1488085614 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:12131142 (GRCh38)
8:11988651 (GRCh37)
Canonical SPDI:: NC_000008.11:12131141:C:T
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.0008/13 (ALFA)
T=0.00237/35 (TOMMO)
T=0.0042/7 (Korea1K)
T=0.00487/13 (KOREAN)
HGVS:: NC_000008.11:g.12131142C>T, NC_000008.10:g.11988651C>T

Select item 148805443312.

rs1488054433 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 8:12130256 (GRCh38)
8:11987765 (GRCh37)
Canonical SPDI:: NC_000008.11:12130255:A:C,NC_000008.11:12130255:A:G
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000024/3 (GnomAD)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000008.11:g.12130256A>C, NC_000008.11:g.12130256A>G, NC_000008.10:g.11987765A>C, NC_000008.10:g.11987765A>G

Select item 148746475113.

rs1487464751 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 8:12130235 (GRCh38)
8:11987744 (GRCh37)
Canonical SPDI:: NC_000008.11:12130234:A:G
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000008.11:g.12130235A>G, NC_000008.10:g.11987744A>G

Select item 148735348314.

rs1487353483 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:12129300 (GRCh38)
8:11986809 (GRCh37)
Canonical SPDI:: NC_000008.11:12129299:C:T
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000054/1 (ALFA)
T=0.000015/2 (GnomAD)
T=0.000082/1 (TOMMO)
HGVS:: NC_000008.11:g.12129300C>T, NC_000008.10:g.11986809C>T

Select item 148719959515.

rs1487199595 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 8:12131047 (GRCh38)
8:11988556 (GRCh37)
Canonical SPDI:: NC_000008.11:12131046:T:G
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000075/10 (GnomAD)
G=0.000468/3 (1000Genomes)
HGVS:: NC_000008.11:g.12131047T>G, NC_000008.10:g.11988556T>G

Select item 148668155616.

rs1486681556 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 8:12130439 (GRCh38)
8:11987948 (GRCh37)
Canonical SPDI:: NC_000008.11:12130438:C:T
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000008.11:g.12130439C>T, NC_000008.10:g.11987948C>T

Select item 148652536417.

rs1486525364 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 8:12130965 (GRCh38)
8:11988474 (GRCh37)
Canonical SPDI:: NC_000008.11:12130964:C:A,NC_000008.11:12130964:C:G,NC_000008.11:12130964:C:T
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000008.11:g.12130965C>A, NC_000008.11:g.12130965C>G, NC_000008.11:g.12130965C>T, NC_000008.10:g.11988474C>A, NC_000008.10:g.11988474C>G, NC_000008.10:g.11988474C>T

Select item 148620003818.

rs1486200038 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 8:12130559 (GRCh38)
8:11988068 (GRCh37)
Canonical SPDI:: NC_000008.11:12130558:A:G
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00211/25 (ALFA)
A=0./0 (SGDP_PRJ)
G=0.00177/25 (TOMMO)
G=0.00424/7 (Korea1K)
HGVS:: NC_000008.11:g.12130559A>G, NC_000008.10:g.11988068A>G

Select item 148568685819.

rs1485686858 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 8:12128495 (GRCh38)
8:11986004 (GRCh37)
Canonical SPDI:: NC_000008.11:12128494:TT:T
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0.000084/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000008.11:g.12128496del, NC_000008.10:g.11986005del, NR_003275.2:n.803del

Select item 148541373720.

rs1485413737 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 8:12128005 (GRCh38)
8:11985514 (GRCh37)
Canonical SPDI:: NC_000008.11:12128004:C:A
Gene:: LOC392196 (Varview), FAM66D (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000008.11:g.12128005C>A, NC_000008.10:g.11985514C>A, NR_003275.2:n.1293G>T

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