SNP Links for Gene (Select 391123) - SNP

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Select item 14910391601.

rs1491039160 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 1:159856770 (GRCh38)
1:159826561 (GRCh37)
Canonical SPDI:: NC_000001.11:159856770::A
Gene:: SNHG28 (Varview), VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: A=0.000319/34 (GnomAD)
HGVS:: NC_000001.11:g.159856770_159856771insA, NC_000001.10:g.159826560_159826561insA

Select item 14909489642.

rs1490948964 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 1:159854377 (GRCh38)
1:159824167 (GRCh37)
Canonical SPDI:: NC_000001.11:159854376:C:A,NC_000001.11:159854376:C:G,NC_000001.11:159854376:C:T
Gene:: SNHG28 (Varview), VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.159854377C>A, NC_000001.11:g.159854377C>G, NC_000001.11:g.159854377C>T, NC_000001.10:g.159824167C>A, NC_000001.10:g.159824167C>G, NC_000001.10:g.159824167C>T, NM_001013661.1:c.*376G>T, NM_001013661.1:c.*376G>C, NM_001013661.1:c.*376G>A

Select item 14908567183.

rs1490856718 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:159855097 (GRCh38)
1:159824887 (GRCh37)
Canonical SPDI:: NC_000001.11:159855096:G:C
Gene:: SNHG28 (Varview), VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.159855097G>C, NC_000001.10:g.159824887G>C, XR_001738261.2:n.251G>C, XR_001738262.2:n.130G>C, XR_007066675.1:n.123G>C

Select item 14906755014.

rs1490675501 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:159856648 (GRCh38)
1:159826438 (GRCh37)
Canonical SPDI:: NC_000001.11:159856647:A:G
Gene:: SNHG28 (Varview), VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000001.11:g.159856648A>G, NC_000001.10:g.159826438A>G

Select item 14905165505.

rs1490516550 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:159858802 (GRCh38)
1:159828592 (GRCh37)
Canonical SPDI:: NC_000001.11:159858801:C:T
Gene:: VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.159858802C>T, NC_000001.10:g.159828592C>T, NM_001013661.1:c.160G>A, NP_001013683.1:p.Gly54Ser

Select item 14904589096.

rs1490458909 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:159853915 (GRCh38)
1:159823705 (GRCh37)
Canonical SPDI:: NC_000001.11:159853914:G:A
Gene:: SNHG28 (Varview), VSIG8 (Varview), LOC107985216 (Varview), LOC124900450 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.159853915G>A, NC_000001.10:g.159823705G>A

Select item 14903669377.

rs1490366937 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:159854742 (GRCh38)
1:159824532 (GRCh37)
Canonical SPDI:: NC_000001.11:159854741:G:A,NC_000001.11:159854741:G:C
Gene:: SNHG28 (Varview), VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
A=0.000016/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.159854742G>A, NC_000001.11:g.159854742G>C, NC_000001.10:g.159824532G>A, NC_000001.10:g.159824532G>C, NM_001013661.1:c.*11C>T, NM_001013661.1:c.*11C>G

Select item 14903391938.

rs1490339193 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:159861112 (GRCh38)
1:159830902 (GRCh37)
Canonical SPDI:: NC_000001.11:159861111:G:C
Gene:: VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.159861112G>C, NC_000001.10:g.159830902G>C, XR_001738261.2:n.1724G>C, XR_001738261.1:n.549G>C, XR_001738262.2:n.1089G>C, XR_001738262.1:n.544G>C, XR_001738263.2:n.589G>C, XR_001738263.1:n.521G>C, XR_007066675.1:n.1025G>C

Select item 14898621859.

rs1489862185 [Homo sapiens]

Variant type:: DEL
Alleles:: AACAA>- [Show Flanks]
Chromosome:: 1:159854380 (GRCh38)
1:159824170 (GRCh37)
Canonical SPDI:: NC_000001.11:159854379:AACAA:
Gene:: SNHG28 (Varview), VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000001.11:g.159854380_159854384del, NC_000001.10:g.159824170_159824174del, NM_001013661.1:c.*369_*373del

Select item 148947533910.

rs1489475339 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:159855442 (GRCh38)
1:159825232 (GRCh37)
Canonical SPDI:: NC_000001.11:159855441:C:T
Gene:: SNHG28 (Varview), VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.159855442C>T, NC_000001.10:g.159825232C>T, XR_001738261.2:n.596C>T

Select item 148934956511.

rs1489349565 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:159859791 (GRCh38)
1:159829581 (GRCh37)
Canonical SPDI:: NC_000001.11:159859790:G:A
Gene:: VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.159859791G>A, NC_000001.10:g.159829581G>A

Select item 148894026912.

rs1488940269 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:159859639 (GRCh38)
1:159829429 (GRCh37)
Canonical SPDI:: NC_000001.11:159859638:G:A,NC_000001.11:159859638:G:C
Gene:: VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.159859639G>A, NC_000001.11:g.159859639G>C, NC_000001.10:g.159829429G>A, NC_000001.10:g.159829429G>C

Select item 148856735213.

rs1488567352 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:159854913 (GRCh38)
1:159824703 (GRCh37)
Canonical SPDI:: NC_000001.11:159854912:G:A
Gene:: SNHG28 (Varview), VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,coding_sequence_variant,non_coding_transcript_variant,missense_variant,genic_upstream_transcript_variant
HGVS:: NC_000001.11:g.159854913G>A, NC_000001.10:g.159824703G>A, XR_001738261.2:n.67G>A, XR_001738263.2:n.67G>A, NM_001134233.1:c.176C>T, NR_147125.1:n.125C>T, NR_147122.1:n.125C>T, NR_147124.1:n.125C>T, NM_001013661.1:c.1085C>T, NP_001013683.1:p.Pro362Leu

Select item 148852728314.

rs1488527283 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:159855592 (GRCh38)
1:159825382 (GRCh37)
Canonical SPDI:: NC_000001.11:159855591:T:C
Gene:: SNHG28 (Varview), VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.159855592T>C, NC_000001.10:g.159825382T>C, XR_001738261.2:n.746T>C

Select item 148840782315.

rs1488407823 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:159860122 (GRCh38)
1:159829912 (GRCh37)
Canonical SPDI:: NC_000001.11:159860121:C:A,NC_000001.11:159860121:C:T
Gene:: VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.159860122C>A, NC_000001.11:g.159860122C>T, NC_000001.10:g.159829912C>A, NC_000001.10:g.159829912C>T

Select item 148783884516.

rs1487838845 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:159854613 (GRCh38)
1:159824403 (GRCh37)
Canonical SPDI:: NC_000001.11:159854612:T:C
Gene:: SNHG28 (Varview), VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.159854613T>C, NC_000001.10:g.159824403T>C, NM_001013661.1:c.*140A>G

Select item 148695342217.

rs1486953422 [Homo sapiens]

Variant type:: DELINS
Alleles:: TACATG>- [Show Flanks]
Chromosome:: 1:159859251 (GRCh38)
1:159829041 (GRCh37)
Canonical SPDI:: NC_000001.11:159859246:CATGTACATG:CATG
Gene:: VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CATG=0./0 (ALFA)
HGVS:: NC_000001.11:g.159859251_159859256del, NC_000001.10:g.159829041_159829046del

Select item 148461816918.

rs1484618169 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:159854050 (GRCh38)
1:159823840 (GRCh37)
Canonical SPDI:: NC_000001.11:159854049:C:T
Gene:: SNHG28 (Varview), VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.159854050C>T, NC_000001.10:g.159823840C>T

Select item 148416065519.

rs1484160655 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 1:159858760 (GRCh38)
1:159828550 (GRCh37)
Canonical SPDI:: NC_000001.11:159858759:C:A,NC_000001.11:159858759:C:G
Gene:: VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000016/2 (GnomAD)
A=0.000546/1 (Korea1K)
HGVS:: NC_000001.11:g.159858760C>A, NC_000001.11:g.159858760C>G, NC_000001.10:g.159828550C>A, NC_000001.10:g.159828550C>G, NM_001013661.1:c.202G>T, NM_001013661.1:c.202G>C, NP_001013683.1:p.Asp68Tyr, NP_001013683.1:p.Asp68His

Select item 148349170520.

rs1483491705 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:159863691 (GRCh38)
1:159833481 (GRCh37)
Canonical SPDI:: NC_000001.11:159863690:G:A
Gene:: VSIG8 (Varview), LOC107985216 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.159863691G>A, NC_000001.10:g.159833481G>A, XR_001738261.2:n.4303G>A, XR_001738261.1:n.3128G>A, XR_001738262.2:n.3668G>A, XR_001738262.1:n.3123G>A, XR_001738263.2:n.3168G>A, XR_001738263.1:n.3100G>A, XR_007066675.1:n.3604G>A

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