SNP Links for Gene (Select 390093) - SNP

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:7930559 (GRCh38)
11:7952106 (GRCh37)
Canonical SPDI:: NC_000011.10:7930558:C:T
Gene:: OR10A6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.7930559C>T, NC_000011.9:g.7952106C>T, NW_011332695.1:g.161553C>T, NT_187583.1:g.162060C>T

Select item 148803727614.

rs1488037276 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAATA>- [Show Flanks]
Chromosome:: 11:7929056 (GRCh38)
11:7950603 (GRCh37)
Canonical SPDI:: NC_000011.10:7929049:AAAATAAAATA:AAAATA
Gene:: OR10A6 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAATA=0./0 (ALFA)
-=0.000021/3 (GnomAD)
-=0.000034/9 (TOPMED)
HGVS:: NC_000011.10:g.7929051AAATA[1], NC_000011.9:g.7950598AAATA[1], NW_011332695.1:g.160045AAATA[1], NT_187583.1:g.160552AAATA[1], NM_001004461.2:c.-397ATTTT[1], NM_001389574.1:c.-397ATTTT[1]

Select item 148801200215.

rs1488012002 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:7927769 (GRCh38)
11:7949316 (GRCh37)
Canonical SPDI:: NC_000011.10:7927768:C:A
Gene:: OR10A6 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.7927769C>A, NC_000011.9:g.7949316C>A, NW_011332695.1:g.158763C>A, NT_187583.1:g.159270C>A, NM_001004461.2:c.894G>T, NM_001004461.1:c.894G>T, NM_001389574.1:c.894G>T, NP_001004461.1:p.Lys298Asn, NP_001376503.1:p.Lys298Asn

Select item 148758419216.

rs1487584192 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:7929286 (GRCh38)
11:7950833 (GRCh37)
Canonical SPDI:: NC_000011.10:7929285:A:C
Gene:: OR10A6 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.7929286A>C, NC_000011.9:g.7950833A>C, NW_011332695.1:g.160280A>C, NT_187583.1:g.160787A>C, NM_001004461.2:c.-624T>G, NM_001389574.1:c.-624T>G

Select item 148644546817.

rs1486445468 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:7927394 (GRCh38)
11:7948941 (GRCh37)
Canonical SPDI:: NC_000011.10:7927393:A:G
Gene:: OR10A6 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.7927394A>G, NC_000011.9:g.7948941A>G, NW_011332695.1:g.158388A>G, NT_187583.1:g.158895A>G, NM_001004461.2:c.*324T>C, NM_001389574.1:c.*324T>C

Select item 148607722818.

rs1486077228 has merged into rs1554906034 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATATATATATATATATATA>-,TA,TATA,TATATA,TATATATA,TATATATATA,TATATATATATA,TATATATATATATA,TATATATATATATATA,TATATATATATATATATA,TATATATATATATATATATATA,TATATATATATATATATATATATA,TATATATATATATATATATATATATA,TATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATA [Show Flanks]
Chromosome:: 11:7929737 (GRCh38)
11:7951284 (GRCh37)
Canonical SPDI:: NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000011.10:7929723:ATATATATATATATATATATATATATATATATA:ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
Gene:: OR10A6 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATATATATATATA=0./0 (ALFA)
-=0.0263/1 (GENOME_DK)
HGVS:: NC_000011.10:g.7929725TA[6], NC_000011.10:g.7929725TA[7], NC_000011.10:g.7929725TA[8], NC_000011.10:g.7929725TA[9], NC_000011.10:g.7929725TA[10], NC_000011.10:g.7929725TA[11], NC_000011.10:g.7929725TA[12], NC_000011.10:g.7929725TA[13], NC_000011.10:g.7929725TA[14], NC_000011.10:g.7929725TA[15], NC_000011.10:g.7929725TA[17], NC_000011.10:g.7929725TA[18], NC_000011.10:g.7929725TA[19], NC_000011.10:g.7929725TA[20], NC_000011.10:g.7929725TA[21], NC_000011.10:g.7929725TA[22], NC_000011.10:g.7929725TA[23], NC_000011.10:g.7929725TA[24], NC_000011.10:g.7929725TA[25], NC_000011.10:g.7929725TA[26], NC_000011.10:g.7929725TA[27], NC_000011.10:g.7929725TA[28], NC_000011.10:g.7929725TA[29], NC_000011.10:g.7929725TA[30], NC_000011.10:g.7929725TA[31], NC_000011.9:g.7951272TA[6], NC_000011.9:g.7951272TA[7], NC_000011.9:g.7951272TA[8], NC_000011.9:g.7951272TA[9], NC_000011.9:g.7951272TA[10], NC_000011.9:g.7951272TA[11], NC_000011.9:g.7951272TA[12], NC_000011.9:g.7951272TA[13], NC_000011.9:g.7951272TA[14], NC_000011.9:g.7951272TA[15], NC_000011.9:g.7951272TA[17], NC_000011.9:g.7951272TA[18], NC_000011.9:g.7951272TA[19], NC_000011.9:g.7951272TA[20], NC_000011.9:g.7951272TA[21], NC_000011.9:g.7951272TA[22], NC_000011.9:g.7951272TA[23], NC_000011.9:g.7951272TA[24], NC_000011.9:g.7951272TA[25], NC_000011.9:g.7951272TA[26], NC_000011.9:g.7951272TA[27], NC_000011.9:g.7951272TA[28], NC_000011.9:g.7951272TA[29], NC_000011.9:g.7951272TA[30], NC_000011.9:g.7951272TA[31], NW_011332695.1:g.160719TA[6], NW_011332695.1:g.160719TA[7], NW_011332695.1:g.160719TA[8], NW_011332695.1:g.160719TA[9], NW_011332695.1:g.160719TA[10], NW_011332695.1:g.160719TA[11], NW_011332695.1:g.160719TA[12], NW_011332695.1:g.160719TA[13], NW_011332695.1:g.160719TA[14], NW_011332695.1:g.160719TA[15], NW_011332695.1:g.160719TA[17], NW_011332695.1:g.160719TA[18], NW_011332695.1:g.160719TA[19], NW_011332695.1:g.160719TA[20], NW_011332695.1:g.160719TA[21], NW_011332695.1:g.160719TA[22], NW_011332695.1:g.160719TA[23], NW_011332695.1:g.160719TA[24], NW_011332695.1:g.160719TA[25], NW_011332695.1:g.160719TA[26], NW_011332695.1:g.160719TA[27], NW_011332695.1:g.160719TA[28], NW_011332695.1:g.160719TA[29], NW_011332695.1:g.160719TA[30], NW_011332695.1:g.160719TA[31], NT_187583.1:g.161226TA[6], NT_187583.1:g.161226TA[7], NT_187583.1:g.161226TA[8], NT_187583.1:g.161226TA[9], NT_187583.1:g.161226TA[10], NT_187583.1:g.161226TA[11], NT_187583.1:g.161226TA[12], NT_187583.1:g.161226TA[13], NT_187583.1:g.161226TA[14], NT_187583.1:g.161226TA[15], NT_187583.1:g.161226TA[17], NT_187583.1:g.161226TA[18], NT_187583.1:g.161226TA[19], NT_187583.1:g.161226TA[20], NT_187583.1:g.161226TA[21], NT_187583.1:g.161226TA[22], NT_187583.1:g.161226TA[23], NT_187583.1:g.161226TA[24], NT_187583.1:g.161226TA[25], NT_187583.1:g.161226TA[26], NT_187583.1:g.161226TA[27], NT_187583.1:g.161226TA[28], NT_187583.1:g.161226TA[29], NT_187583.1:g.161226TA[30], NT_187583.1:g.161226TA[31], NM_001004461.2:c.-1093AT[6], NM_001004461.2:c.-1093AT[7], NM_001004461.2:c.-1093AT[8], NM_001004461.2:c.-1093AT[9], NM_001004461.2:c.-1093AT[10], NM_001004461.2:c.-1093AT[11], NM_001004461.2:c.-1093AT[12], NM_001004461.2:c.-1093AT[13], NM_001004461.2:c.-1093AT[14], NM_001004461.2:c.-1093AT[15], NM_001004461.2:c.-1093AT[17], NM_001004461.2:c.-1093AT[18], NM_001004461.2:c.-1093AT[19], NM_001004461.2:c.-1093AT[20], NM_001004461.2:c.-1093AT[21], NM_001004461.2:c.-1093AT[22], NM_001004461.2:c.-1093AT[23], NM_001004461.2:c.-1093AT[24], NM_001004461.2:c.-1093AT[25], NM_001004461.2:c.-1093AT[26], NM_001004461.2:c.-1093AT[27], NM_001004461.2:c.-1093AT[28], NM_001004461.2:c.-1093AT[29], NM_001004461.2:c.-1093AT[30], NM_001004461.2:c.-1093AT[31], NM_001389574.1:c.-1093AT[6], NM_001389574.1:c.-1093AT[7], NM_001389574.1:c.-1093AT[8], NM_001389574.1:c.-1093AT[9], NM_001389574.1:c.-1093AT[10], NM_001389574.1:c.-1093AT[11], NM_001389574.1:c.-1093AT[12], NM_001389574.1:c.-1093AT[13], NM_001389574.1:c.-1093AT[14], NM_001389574.1:c.-1093AT[15], NM_001389574.1:c.-1093AT[17], NM_001389574.1:c.-1093AT[18], NM_001389574.1:c.-1093AT[19], NM_001389574.1:c.-1093AT[20], NM_001389574.1:c.-1093AT[21], NM_001389574.1:c.-1093AT[22], NM_001389574.1:c.-1093AT[23], NM_001389574.1:c.-1093AT[24], NM_001389574.1:c.-1093AT[25], NM_001389574.1:c.-1093AT[26], NM_001389574.1:c.-1093AT[27], NM_001389574.1:c.-1093AT[28], NM_001389574.1:c.-1093AT[29], NM_001389574.1:c.-1093AT[30], NM_001389574.1:c.-1093AT[31]

Select item 148444993919.

rs1484449939 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:7928983 (GRCh38)
11:7950530 (GRCh37)
Canonical SPDI:: NC_000011.10:7928982:C:G,NC_000011.10:7928982:C:T
Gene:: OR10A6 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.7928983C>G, NC_000011.10:g.7928983C>T, NC_000011.9:g.7950530C>G, NC_000011.9:g.7950530C>T, NW_011332695.1:g.159977C>G, NW_011332695.1:g.159977C>T, NT_187583.1:g.160484C>G, NT_187583.1:g.160484C>T, NM_001004461.2:c.-321G>C, NM_001004461.2:c.-321G>A, NM_001389574.1:c.-321G>C, NM_001389574.1:c.-321G>A

Select item 148202355720.

rs1482023557 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 11:7927812 (GRCh38)
11:7949359 (GRCh37)
Canonical SPDI:: NC_000011.10:7927811:A:G,NC_000011.10:7927811:A:T
Gene:: OR10A6 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000011.10:g.7927812A>G, NC_000011.10:g.7927812A>T, NC_000011.9:g.7949359A>G, NC_000011.9:g.7949359A>T, NW_011332695.1:g.158806A>G, NW_011332695.1:g.158806A>T, NT_187583.1:g.159313A>G, NT_187583.1:g.159313A>T, NM_001004461.2:c.851T>C, NM_001004461.2:c.851T>A, NM_001004461.1:c.851T>C, NM_001004461.1:c.851T>A, NM_001389574.1:c.851T>C, NM_001389574.1:c.851T>A, NP_001004461.1:p.Leu284Pro, NP_001004461.1:p.Leu284Gln, NP_001376503.1:p.Leu284Pro, NP_001376503.1:p.Leu284Gln

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