SNP Links for Gene (Select 390077) - SNP

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Select item 14915636581.

rs1491563658 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 11:5812495 (GRCh38)
11:5833726 (GRCh37)
Canonical SPDI:: NC_000011.10:5812495::G
Gene:: OR52N2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.5812495_5812496insG, NC_000011.9:g.5833725_5833726insG

Select item 14911994262.

rs1491199426 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 11:5812494 (GRCh38)
11:5833724 (GRCh37)
Canonical SPDI:: NC_000011.10:5812493:CA:
Gene:: OR52N2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00059/7 (ALFA)
-=0.00046/13 (TOMMO)
HGVS:: NC_000011.10:g.5812494_5812495del, NC_000011.9:g.5833724_5833725del

Select item 14911362673.

rs1491136267 has merged into rs57515736 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAA>-,A,AAA,AAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 11:5812502 (GRCh38)
11:5833732 (GRCh37)
Canonical SPDI:: NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:5812494:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: OR52N2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
-=0.4089/2048 (1000Genomes)
HGVS:: NC_000011.10:g.5812502_5812512del, NC_000011.10:g.5812503_5812512del, NC_000011.10:g.5812505_5812512del, NC_000011.10:g.5812507_5812512del, NC_000011.10:g.5812510_5812512del, NC_000011.10:g.5812511_5812512del, NC_000011.10:g.5812512del, NC_000011.10:g.5812512dup, NC_000011.10:g.5812511_5812512dup, NC_000011.10:g.5812510_5812512dup, NC_000011.10:g.5812509_5812512dup, NC_000011.10:g.5812508_5812512dup, NC_000011.10:g.5812507_5812512dup, NC_000011.10:g.5812506_5812512dup, NC_000011.10:g.5812505_5812512dup, NC_000011.10:g.5812501_5812512dup, NC_000011.10:g.5812512_5812513insAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000011.9:g.5833732_5833742del, NC_000011.9:g.5833733_5833742del, NC_000011.9:g.5833735_5833742del, NC_000011.9:g.5833737_5833742del, NC_000011.9:g.5833740_5833742del, NC_000011.9:g.5833741_5833742del, NC_000011.9:g.5833742del, NC_000011.9:g.5833742dup, NC_000011.9:g.5833741_5833742dup, NC_000011.9:g.5833740_5833742dup, NC_000011.9:g.5833739_5833742dup, NC_000011.9:g.5833738_5833742dup, NC_000011.9:g.5833737_5833742dup, NC_000011.9:g.5833736_5833742dup, NC_000011.9:g.5833735_5833742dup, NC_000011.9:g.5833731_5833742dup, NC_000011.9:g.5833742_5833743insAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14910379624.

rs1491037962 has merged into rs71468070 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>-,ATAT,ATATAT,ATATATAT [Show Flanks]
Chromosome:: 11:5815945 (GRCh38)
11:5837175 (GRCh37)
Canonical SPDI:: NC_000011.10:5815935:TATATATATAT:TATATATAT,NC_000011.10:5815935:TATATATATAT:TATATATATATAT,NC_000011.10:5815935:TATATATATAT:TATATATATATATAT,NC_000011.10:5815935:TATATATATAT:TATATATATATATATAT
Gene:: OR52N2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATATATATAT=0./0 (ALFA)
-=0.425/255 (NorthernSweden)
TA=0.45/18 (GENOME_DK)
-=0.4639/463 (GoNL)
HGVS:: NC_000011.10:g.5815937AT[4], NC_000011.10:g.5815937AT[6], NC_000011.10:g.5815937AT[7], NC_000011.10:g.5815937AT[8], NC_000011.9:g.5837167AT[4], NC_000011.9:g.5837167AT[6], NC_000011.9:g.5837167AT[7], NC_000011.9:g.5837167AT[8]

Select item 14909642575.

rs1490964257 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:5812083 (GRCh38)
11:5833313 (GRCh37)
Canonical SPDI:: NC_000011.10:5812082:G:T
Gene:: OR52N2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000193/27 (GnomAD)
T=0.000204/54 (TOPMED)
HGVS:: NC_000011.10:g.5812083G>T, NC_000011.9:g.5833313G>T

Select item 14909234076.

rs1490923407 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:5804829 (GRCh38)
11:5826059 (GRCh37)
Canonical SPDI:: NC_000011.10:5804828:A:G
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.5804829A>G, NC_000011.9:g.5826059A>G

Select item 14908544177.

rs1490854417 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:5819936 (GRCh38)
11:5841166 (GRCh37)
Canonical SPDI:: NC_000011.10:5819935:G:A
Gene:: OR52N2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000342/1 (KOREAN)
A=0.000354/6 (TOMMO)
HGVS:: NC_000011.10:g.5819936G>A, NC_000011.9:g.5841166G>A

Select item 14898425898.

rs1489842589 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:5803399 (GRCh38)
11:5824629 (GRCh37)
Canonical SPDI:: NC_000011.10:5803398:A:T
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.5803399A>T, NC_000011.9:g.5824629A>T

Select item 14898196729.

rs1489819672 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:5810996 (GRCh38)
11:5832226 (GRCh37)
Canonical SPDI:: NC_000011.10:5810995:A:G
Gene:: OR52N2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.5810996A>G, NC_000011.9:g.5832226A>G

Select item 148980449910.

rs1489804499 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:5808924 (GRCh38)
11:5830154 (GRCh37)
Canonical SPDI:: NC_000011.10:5808923:G:A
Gene:: OR52N2 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.5808924G>A, NC_000011.9:g.5830154G>A, NM_001005174.3:c.-185G>A, NM_001005174.2:c.-185G>A

Select item 148979765311.

rs1489797653 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:5804342 (GRCh38)
11:5825572 (GRCh37)
Canonical SPDI:: NC_000011.10:5804341:A:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.5804342A>C, NC_000011.9:g.5825572A>C

Select item 148966959412.

rs1489669594 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATA>- [Show Flanks]
Chromosome:: 11:5817988 (GRCh38)
11:5839218 (GRCh37)
Canonical SPDI:: NC_000011.10:5817983:AATAATA:AATA
Gene:: OR52N2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AATA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.5817985ATA[1], NC_000011.9:g.5839215ATA[1]

Select item 148950621613.

rs1489506216 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:5805830 (GRCh38)
11:5827060 (GRCh37)
Canonical SPDI:: NC_000011.10:5805829:A:C
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.5805830A>C, NC_000011.9:g.5827060A>C, NM_001005174.2:c.-3279A>C

Select item 148950620314.

rs1489506203 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:5807776 (GRCh38)
11:5829006 (GRCh37)
Canonical SPDI:: NC_000011.10:5807775:C:T
Gene:: OR52N2 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.5807776C>T, NC_000011.9:g.5829006C>T, NM_001005174.2:c.-1333C>T

Select item 148944122215.

rs1489441222 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:5814334 (GRCh38)
11:5835564 (GRCh37)
Canonical SPDI:: NC_000011.10:5814333:G:C
Gene:: OR52N2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000017/2 (GnomAD)
HGVS:: NC_000011.10:g.5814334G>C, NC_000011.9:g.5835564G>C

Select item 148931997316.

rs1489319973 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 11:5820340 (GRCh38)
11:5841570 (GRCh37)
Canonical SPDI:: NC_000011.10:5820339:C:G,NC_000011.10:5820339:C:T
Gene:: OR52N2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.5820340C>G, NC_000011.10:g.5820340C>T, NC_000011.9:g.5841570C>G, NC_000011.9:g.5841570C>T, NM_001005174.3:c.5C>G, NM_001005174.3:c.5C>T, NM_001005174.2:c.5C>G, NM_001005174.2:c.5C>T, NM_001005174.1:c.5C>G, NM_001005174.1:c.5C>T, NP_001005174.1:p.Ser2Cys, NP_001005174.1:p.Ser2Phe

Select item 148929030317.

rs1489290303 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:5814974 (GRCh38)
11:5836204 (GRCh37)
Canonical SPDI:: NC_000011.10:5814973:G:A
Gene:: OR52N2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.5814974G>A, NC_000011.9:g.5836204G>A

Select item 148901092618.

rs1489010926 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GT [Show Flanks]
Chromosome:: 11:5815933 (GRCh38)
11:5837164 (GRCh37)
Canonical SPDI:: NC_000011.10:5815933:TGT:TGTGT
Gene:: OR52N2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTGT=0.000084/1 (ALFA)
TG=0.000096/10 (GnomAD)
HGVS:: NC_000011.10:g.5815935_5815936dup, NC_000011.9:g.5837165_5837166dup

Select item 148873215819.

rs1488732158 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:5821855 (GRCh38)
11:5843085 (GRCh37)
Canonical SPDI:: NC_000011.10:5821854:T:C
Gene:: OR52N2 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
HGVS:: NC_000011.10:g.5821855T>C, NC_000011.9:g.5843085T>C

Select item 148855619220.

rs1488556192 [Homo sapiens]

Variant type:: INS
Alleles:: ->A,AA [Show Flanks]
Chromosome:: 11:5812493 (GRCh38)
11:5833724 (GRCh37)
Canonical SPDI:: NC_000011.10:5812493::A,NC_000011.10:5812493::AA
Gene:: OR52N2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.00639/101 (TOMMO)
A=0.00678/56 (GnomAD)
HGVS:: NC_000011.10:g.5812493_5812494insA, NC_000011.10:g.5812493_5812494insAA, NC_000011.9:g.5833723_5833724insA, NC_000011.9:g.5833723_5833724insAA

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