Links from Gene
Items: 1 to 20 of 2062
1.
rs1491561652 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- CT>-
[Show Flanks]
- Chromosome:
- 9:136759383
(GRCh38)
9:139653835
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759382:CT:
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
-=0./0
(
ALFA)
-=0.000079/11
(GnomAD)
- HGVS:
2.
rs1490657103 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:136761502
(GRCh38)
9:139655954
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136761501:C:T
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
3.
rs1489864302 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>T
[Show Flanks]
- Chromosome:
- 9:136762833
(GRCh38)
9:139657285
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136762832:G:T
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0.000071/1
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
4.
rs1489600895 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 9:136763940
(GRCh38)
9:139658392
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136763939:G:A
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- coding_sequence_variant,synonymous_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000007/1
(GnomAD)
- HGVS:
5.
rs1488953505 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:136763137
(GRCh38)
9:139657589
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136763136:C:T
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0.000071/1
(
ALFA)
T=0.000022/3
(GnomAD)
- HGVS:
6.
rs1488674388 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CAGCTACCAC>-
[Show Flanks]
- Chromosome:
- 9:136759941
(GRCh38)
9:139654393
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759937:CACCAGCTACCAC:CAC
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
CAC=0./0
(
ALFA)
-=0.000023/6
(TOPMED)
- HGVS:
7.
rs1488622712 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A
[Show Flanks]
- Chromosome:
- 9:136760672
(GRCh38)
9:139655124
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136760671:C:A
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
A=0.000007/1
(GnomAD)
- HGVS:
8.
rs1488292536 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:136759548
(GRCh38)
9:139654000
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759547:C:T
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0.000071/1
(
ALFA)
T=0.000007/1
(GnomAD)
- HGVS:
9.
rs1487970100 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>C,T
[Show Flanks]
- Chromosome:
- 9:136763447
(GRCh38)
9:139657899
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136763446:G:C,NC_000009.12:136763446:G:T
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- coding_sequence_variant,missense_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000014/2
(GnomAD)
- HGVS:
NC_000009.12:g.136763447G>C, NC_000009.12:g.136763447G>T, NC_000009.11:g.139657899G>C, NC_000009.11:g.139657899G>T, NM_203347.2:c.328C>G, NM_203347.2:c.328C>A, NM_203347.1:c.328C>G, NM_203347.1:c.328C>A, XM_011518672.2:c.199C>G, XM_011518672.2:c.199C>A, XM_011518672.1:c.199C>G, XM_011518672.1:c.199C>A, NP_976222.1:p.Arg110Gly, NP_976222.1:p.Arg110Ser, XP_011516974.1:p.Arg67Gly, XP_011516974.1:p.Arg67Ser
10.
rs1487248002 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 9:136759259
(GRCh38)
9:139653711
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759258:G:A
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0.000071/1
(
ALFA)
A=0.000015/4
(TOPMED)
A=0.000029/4
(GnomAD)
- HGVS:
11.
rs1487201905 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 9:136764515
(GRCh38)
9:139658967
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136764514:T:C
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- 5_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.000071/1
(
ALFA)
C=0.000004/1
(GnomAD_exomes)
C=0.000021/3
(GnomAD)
C=0.00003/8
(TOPMED)
- HGVS:
12.
rs1486319269 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 9:136761151
(GRCh38)
9:139655603
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136761150:G:A
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
A=0.000007/1
(GnomAD)
- HGVS:
13.
rs1486272820 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G,T
[Show Flanks]
- Chromosome:
- 9:136759963
(GRCh38)
9:139654415
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759962:C:G,NC_000009.12:136759962:C:T
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.000071/1
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
14.
rs1486101257 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A,T
[Show Flanks]
- Chromosome:
- 9:136765031
(GRCh38)
9:139659483
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136765030:C:A,NC_000009.12:136765030:C:T
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
- HGVS:
15.
rs1485704714 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A,T
[Show Flanks]
- Chromosome:
- 9:136765129
(GRCh38)
9:139659581
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136765128:C:A,NC_000009.12:136765128:C:T
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000007/1
(GnomAD)
T=0.000035/1
(TOMMO)
- HGVS:
16.
rs1485620773 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:136759183
(GRCh38)
9:139653635
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759182:C:T
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000008/2
(TOPMED)
T=0.000021/2
(GnomAD)
- HGVS:
17.
rs1485571340 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:136759824
(GRCh38)
9:139654276
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136759823:C:T
- Gene:
- LCN8 (Varview), LCN15 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000034/9
(TOPMED)
T=0.000043/6
(GnomAD)
T=0.000156/1
(1000Genomes)
C=0.5/1
(SGDP_PRJ)
- HGVS:
18.
rs1485069786 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 9:136762265
(GRCh38)
9:139656717
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136762264:T:G
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- coding_sequence_variant,missense_variant
- Validated:
- by frequency,by alfa
- MAF:
G=0./0
(
ALFA)
G=0.000004/1
(TOPMED)
- HGVS:
19.
rs1484768156 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:136762877
(GRCh38)
9:139657329
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136762876:C:T
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0.000071/1
(
ALFA)
T=0.000007/1
(GnomAD)
- HGVS:
20.
rs1484492698 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:136760842
(GRCh38)
9:139655294
(GRCh37)
- Canonical SPDI:
- NC_000009.12:136760841:C:T
- Gene:
- LCN15 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS: