SNP Links for Gene (Select 388456) - SNP

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Select item 14914819141.

rs1491481914 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 18:925911 (GRCh38)
18:925913 (GRCh37)
Canonical SPDI:: NC_000018.10:925911:C:CC
Gene:: LINC01904 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.000106/2 (TOMMO)
C=0.002409/317 (GnomAD)
HGVS:: NC_000018.10:g.925912dup, NC_000018.9:g.925913dup

Select item 14914067722.

rs1491406772 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 18:925912 (GRCh38)
18:925913 (GRCh37)
Canonical SPDI:: NC_000018.10:925910:ACA:A
Gene:: LINC01904 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency
MAF:: -=0.000008/1 (GnomAD)
HGVS:: NC_000018.10:g.925912_925913del, NC_000018.9:g.925913_925914del

Select item 14910369213.

rs1491036921 has merged into rs201578706 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTT [Show Flanks]
Chromosome:: 18:927274 (GRCh38)
18:927275 (GRCh37)
Canonical SPDI:: NC_000018.10:927262:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000018.10:927262:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000018.10:927262:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000018.10:927262:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000018.10:927262:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTT
Gene:: LINC01904 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTT=0./0 (ALFA)
T=0.05167/31 (NorthernSweden)
HGVS:: NC_000018.10:g.927274_927275del, NC_000018.10:g.927275del, NC_000018.10:g.927275dup, NC_000018.10:g.927274_927275dup, NC_000018.10:g.927273_927275dup, NC_000018.9:g.927275_927276del, NC_000018.9:g.927276del, NC_000018.9:g.927276dup, NC_000018.9:g.927275_927276dup, NC_000018.9:g.927274_927276dup

Select item 14909064954.

rs1490906495 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 18:928516 (GRCh38)
18:928517 (GRCh37)
Canonical SPDI:: NC_000018.10:928515:T:C
Gene:: LINC01904 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.928516T>C, NC_000018.9:g.928517T>C

Select item 14908589125.

rs1490858912 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTAT>- [Show Flanks]
Chromosome:: 18:929611 (GRCh38)
18:929612 (GRCh37)
Canonical SPDI:: NC_000018.10:929607:TATTTAT:TAT
Gene:: LINC01904 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TAT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.929611_929614del, NC_000018.9:g.929612_929615del

Select item 14904119876.

rs1490411987 [Homo sapiens]

Variant type:: SNV:
Alleles:: CCAACCA>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14902518627.

rs1490251862 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 18:926965 (GRCh38)
18:926966 (GRCh37)
Canonical SPDI:: NC_000018.10:926964:T:C
Gene:: LINC01904 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.926965T>C, NC_000018.9:g.926966T>C

Select item 14890722638.

rs1489072263 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:928154 (GRCh38)
18:928155 (GRCh37)
Canonical SPDI:: NC_000018.10:928153:G:A
Gene:: LINC01904 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000018.10:g.928154G>A, NC_000018.9:g.928155G>A

Select item 14890698509.

rs1489069850 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 18:927167 (GRCh38)
18:927168 (GRCh37)
Canonical SPDI:: NC_000018.10:927166:T:
Gene:: LINC01904 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.927167del, NC_000018.9:g.927168del

Select item 148897798510.

rs1488977985 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 18:928195 (GRCh38)
18:928196 (GRCh37)
Canonical SPDI:: NC_000018.10:928194:T:A
Gene:: LINC01904 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.928195T>A, NC_000018.9:g.928196T>A

Select item 148874094211.

rs1488740942 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 18:927617 (GRCh38)
18:927618 (GRCh37)
Canonical SPDI:: NC_000018.10:927616:A:C
Gene:: LINC01904 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000018.10:g.927617A>C, NC_000018.9:g.927618A>C

Select item 148873336012.

rs1488733360 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 18:929128 (GRCh38)
18:929129 (GRCh37)
Canonical SPDI:: NC_000018.10:929127:T:A
Gene:: LINC01904 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000026/7 (TOPMED)
HGVS:: NC_000018.10:g.929128T>A, NC_000018.9:g.929129T>A

Select item 148864845513.

rs1488648455 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 18:928610 (GRCh38)
18:928611 (GRCh37)
Canonical SPDI:: NC_000018.10:928609:T:C
Gene:: LINC01904 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.928610T>C, NC_000018.9:g.928611T>C

Select item 148737596314.

rs1487375963 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 18:928493 (GRCh38)
18:928494 (GRCh37)
Canonical SPDI:: NC_000018.10:928492:G:C
Gene:: LINC01904 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000018.10:g.928493G>C, NC_000018.9:g.928494G>C

Select item 148701559415.

rs1487015594 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:929118 (GRCh38)
18:929119 (GRCh37)
Canonical SPDI:: NC_000018.10:929117:G:A
Gene:: LINC01904 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000018.10:g.929118G>A, NC_000018.9:g.929119G>A

Select item 148626032416.

rs1486260324 [Homo sapiens]

Variant type:: DEL
Alleles:: GG>- [Show Flanks]
Chromosome:: 18:929732 (GRCh38)
18:929733 (GRCh37)
Canonical SPDI:: NC_000018.10:929731:GG:
Gene:: LINC01904 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.929732_929733del, NC_000018.9:g.929733_929734del

Select item 148618602217.

rs1486186022 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GCTAACCA [Show Flanks]
Chromosome:: 18:925853 (GRCh38)
18:925855 (GRCh37)
Canonical SPDI:: NC_000018.10:925853:AACCA:AACCAGCTAACCA
Gene:: LINC01904 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AACCAGCTAACCA=0./0 (ALFA)
HGVS:: NC_000018.10:g.925858_925859insGCTAACCA, NC_000018.9:g.925859_925860insGCTAACCA

Select item 148605411718.

rs1486054117 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:926604 (GRCh38)
18:926605 (GRCh37)
Canonical SPDI:: NC_000018.10:926603:C:T
Gene:: LINC01904 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.926604C>T, NC_000018.9:g.926605C>T, NR_146724.1:n.340G>A

Select item 148576109519.

rs1485761095 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 18:926227 (GRCh38)
18:926228 (GRCh37)
Canonical SPDI:: NC_000018.10:926226:T:C
Gene:: LINC01904 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.926227T>C, NC_000018.9:g.926228T>C, NR_146724.1:n.717A>G

Select item 148543304320.

rs1485433043 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 18:926755 (GRCh38)
18:926756 (GRCh37)
Canonical SPDI:: NC_000018.10:926754:G:T
Gene:: LINC01904 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.926755G>T, NC_000018.9:g.926756G>T, NR_146724.1:n.189C>A

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