SNP Links for Gene (Select 3866) - SNP

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Select item 14908003401.

rs1490800340 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:41517771 (GRCh38)
17:39674023 (GRCh37)
Canonical SPDI:: NC_000017.11:41517770:T:C
Gene:: KRT15 (Varview), MIR6510 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.41517771T>C, NC_000017.10:g.39674023T>C, NG_012284.1:g.6248A>G

Select item 14902250812.

rs1490225081 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:41514615 (GRCh38)
17:39670867 (GRCh37)
Canonical SPDI:: NC_000017.11:41514614:C:T
Gene:: KRT15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.41514615C>T, NC_000017.10:g.39670867C>T, NG_012284.1:g.9404G>A

Select item 14900236833.

rs1490023683 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:41522776 (GRCh38)
17:39679028 (GRCh37)
Canonical SPDI:: NC_000017.11:41522775:A:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.41522776A>T, NC_000017.10:g.39679028A>T, NG_012284.1:g.1243T>A, NG_012285.1:g.10614T>A

Select item 14896046294.

rs1489604629 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 17:41515708 (GRCh38)
17:39671960 (GRCh37)
Canonical SPDI:: NC_000017.11:41515707:A:G,NC_000017.11:41515707:A:T
Gene:: KRT15 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000017.11:g.41515708A>G, NC_000017.11:g.41515708A>T, NC_000017.10:g.39671960A>G, NC_000017.10:g.39671960A>T, NG_012284.1:g.8311T>C, NG_012284.1:g.8311T>A

Select item 14893871375.

rs1489387137 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:41523357 (GRCh38)
17:39679609 (GRCh37)
Canonical SPDI:: NC_000017.11:41523356:T:C
Gene:: KRT19 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.41523357T>C, NC_000017.10:g.39679609T>C, NG_012284.1:g.662A>G, NG_012285.1:g.10033A>G

Select item 14891310766.

rs1489131076 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:41513637 (GRCh38)
17:39669889 (GRCh37)
Canonical SPDI:: NC_000017.11:41513636:G:A,NC_000017.11:41513636:G:C
Gene:: KRT15 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000017.11:g.41513637G>A, NC_000017.11:g.41513637G>C, NC_000017.10:g.39669889G>A, NC_000017.10:g.39669889G>C, NG_012284.1:g.10382C>T, NG_012284.1:g.10382C>G

Select item 14889052267.

rs1488905226 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 17:41517595 (GRCh38)
17:39673847 (GRCh37)
Canonical SPDI:: NC_000017.11:41517594:C:A,NC_000017.11:41517594:C:G
Gene:: KRT15 (Varview), MIR6510 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
G=0.000035/1 (TOMMO)
A=0.000042/1 (GnomAD_exomes)
A=0.000042/11 (TOPMED)
A=0.000043/6 (GnomAD)
HGVS:: NC_000017.11:g.41517595C>A, NC_000017.11:g.41517595C>G, NC_000017.10:g.39673847C>A, NC_000017.10:g.39673847C>G, NG_012284.1:g.6424G>T, NG_012284.1:g.6424G>C

Select item 14888767008.

rs1488876700 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:41523737 (GRCh38)
17:39679989 (GRCh37)
Canonical SPDI:: NC_000017.11:41523736:G:A
Gene:: KRT19 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.41523737G>A, NC_000017.10:g.39679989G>A, NG_012284.1:g.282C>T, NG_012285.1:g.9653C>T, NM_002276.5:c.*6C>T, NM_002276.4:c.*6C>T

Select item 14884023339.

rs1488402333 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:41517203 (GRCh38)
17:39673455 (GRCh37)
Canonical SPDI:: NC_000017.11:41517202:C:G
Gene:: KRT15 (Varview), MIR6510 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000035/1 (TOMMO)
HGVS:: NC_000017.11:g.41517203C>G, NC_000017.10:g.39673455C>G, NG_012284.1:g.6816G>C, NR_106765.1:n.15G>C

Select item 148840026010.

rs1488400260 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:41522887 (GRCh38)
17:39679139 (GRCh37)
Canonical SPDI:: NC_000017.11:41522886:G:A
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.41522887G>A, NC_000017.10:g.39679139G>A, NG_012284.1:g.1132C>T, NG_012285.1:g.10503C>T

Select item 148836824611.

rs1488368246 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:41521882 (GRCh38)
17:39678134 (GRCh37)
Canonical SPDI:: NC_000017.11:41521881:C:A
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.41521882C>A, NC_000017.10:g.39678134C>A, NG_012284.1:g.2137G>T, NG_012285.1:g.11508G>T

Select item 148833418212.

rs1488334182 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:41520769 (GRCh38)
17:39677021 (GRCh37)
Canonical SPDI:: NC_000017.11:41520768:T:A
Gene:: KRT15 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.41520769T>A, NC_000017.10:g.39677021T>A, NG_012284.1:g.3250A>T

Select item 148820279413.

rs1488202794 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:41514399 (GRCh38)
17:39670651 (GRCh37)
Canonical SPDI:: NC_000017.11:41514398:G:T
Gene:: KRT15 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000106/2 (TOMMO)
HGVS:: NC_000017.11:g.41514399G>T, NC_000017.10:g.39670651G>T, NG_012284.1:g.9620C>A

Select item 148779832114.

rs1487798321 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:41514070 (GRCh38)
17:39670322 (GRCh37)
Canonical SPDI:: NC_000017.11:41514069:C:T
Gene:: KRT15 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.41514070C>T, NC_000017.10:g.39670322C>T, NG_012284.1:g.9949G>A, NM_002275.4:c.1324G>A, NM_002275.3:c.1324G>A, XM_011524784.4:c.1345G>A, XM_011524784.3:c.1345G>A, XM_011524784.2:c.1345G>A, XM_011524784.1:c.1345G>A, NP_002266.3:p.Glu442Lys, XP_011523086.1:p.Glu449Lys

Select item 148738853715.

rs1487388537 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 17:41521428 (GRCh38)
17:39677680 (GRCh37)
Canonical SPDI:: NC_000017.11:41521427:A:C,NC_000017.11:41521427:A:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.41521428A>C, NC_000017.11:g.41521428A>T, NC_000017.10:g.39677680A>C, NC_000017.10:g.39677680A>T, NG_012284.1:g.2591T>G, NG_012284.1:g.2591T>A

Select item 148699006316.

rs1486990063 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 17:41515937 (GRCh38)
17:39672189 (GRCh37)
Canonical SPDI:: NC_000017.11:41515936:A:
Gene:: KRT15 (Varview)
Functional Consequence:: frameshift_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000051/1 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000012/3 (GnomAD_exomes)
-=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.41515937del, NC_000017.10:g.39672189del, NG_012284.1:g.8082del, NM_002275.4:c.974del, NM_002275.3:c.974del, XM_011524784.4:c.995del, XM_011524784.3:c.995del, XM_011524784.2:c.995del, XM_011524784.1:c.995del, XM_017024614.3:c.995del, XM_017024614.2:c.995del, XM_017024614.1:c.995del, NP_002266.3:p.Leu325fs, XP_011523086.1:p.Leu332fs, XP_016880103.1:p.Leu332fs

Select item 148679742617.

rs1486797426 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:41513615 (GRCh38)
17:39669867 (GRCh37)
Canonical SPDI:: NC_000017.11:41513614:A:G
Gene:: KRT15 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.41513615A>G, NC_000017.10:g.39669867A>G, NG_012284.1:g.10404T>C

Select item 148675931918.

rs1486759319 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:41520342 (GRCh38)
17:39676594 (GRCh37)
Canonical SPDI:: NC_000017.11:41520341:G:A
Gene:: KRT15 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.41520342G>A, NC_000017.10:g.39676594G>A, NG_012284.1:g.3677C>T

Select item 148655760319.

rs1486557603 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 17:41517331 (GRCh38)
17:39673583 (GRCh37)
Canonical SPDI:: NC_000017.11:41517330:CC:C
Gene:: KRT15 (Varview), MIR6510 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.41517332del, NC_000017.10:g.39673584del, NG_012284.1:g.6688del

Select item 148624211320.

rs1486242113 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:41513528 (GRCh38)
17:39669780 (GRCh37)
Canonical SPDI:: NC_000017.11:41513527:C:A
Gene:: KRT15 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.41513528C>A, NC_000017.10:g.39669780C>A, NG_012284.1:g.10491G>T

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