SNP Links for Gene (Select 379025) - SNP

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Select item 14915857891.

rs1491585789 has merged into rs33921360 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT [Show Flanks]
Chromosome:: 14:58281745 (GRCh38)
14:58748463 (GRCh37)
Canonical SPDI:: NC_000014.9:58281734:TTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000014.9:58281734:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000014.9:58281734:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000014.9:58281734:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000014.9:58281734:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000014.9:58281734:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000014.9:58281734:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000014.9:58281734:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000014.9:58281734:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000014.9:58281734:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000014.9:58281734:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT
Gene:: PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
-=0.1642/633 (ALSPAC)
T=0.3682/1844 (1000Genomes)
HGVS:: NC_000014.9:g.58281745_58281752del, NC_000014.9:g.58281746_58281752del, NC_000014.9:g.58281747_58281752del, NC_000014.9:g.58281748_58281752del, NC_000014.9:g.58281749_58281752del, NC_000014.9:g.58281750_58281752del, NC_000014.9:g.58281751_58281752del, NC_000014.9:g.58281752del, NC_000014.9:g.58281752dup, NC_000014.9:g.58281751_58281752dup, NC_000014.9:g.58281750_58281752dup, NC_000014.8:g.58748463_58748470del, NC_000014.8:g.58748464_58748470del, NC_000014.8:g.58748465_58748470del, NC_000014.8:g.58748466_58748470del, NC_000014.8:g.58748467_58748470del, NC_000014.8:g.58748468_58748470del, NC_000014.8:g.58748469_58748470del, NC_000014.8:g.58748470del, NC_000014.8:g.58748470dup, NC_000014.8:g.58748469_58748470dup, NC_000014.8:g.58748468_58748470dup

Select item 14915482762.

rs1491548276 has merged into rs59655145 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACACACAC>-,AC,ACAC,ACACAC,ACACACACAC,ACACACACACAC,ACACACACACACAC [Show Flanks]
Chromosome:: 14:58293758 (GRCh38)
14:58760476 (GRCh37)
Canonical SPDI:: NC_000014.9:58293747:ACACACACACACACACAC:ACACACACAC,NC_000014.9:58293747:ACACACACACACACACAC:ACACACACACAC,NC_000014.9:58293747:ACACACACACACACACAC:ACACACACACACAC,NC_000014.9:58293747:ACACACACACACACACAC:ACACACACACACACAC,NC_000014.9:58293747:ACACACACACACACACAC:ACACACACACACACACACAC,NC_000014.9:58293747:ACACACACACACACACAC:ACACACACACACACACACACAC,NC_000014.9:58293747:ACACACACACACACACAC:ACACACACACACACACACACACAC
Gene:: PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACAC=0./0 (ALFA)
AC=0.2816/281 (GoNL)
AC=0.32/192 (NorthernSweden)
AC=0.35/14 (GENOME_DK)
AC=0.3718/1825 (1000Genomes)
HGVS:: NC_000014.9:g.58293748AC[5], NC_000014.9:g.58293748AC[6], NC_000014.9:g.58293748AC[7], NC_000014.9:g.58293748AC[8], NC_000014.9:g.58293748AC[10], NC_000014.9:g.58293748AC[11], NC_000014.9:g.58293748AC[12], NC_000014.8:g.58760466AC[5], NC_000014.8:g.58760466AC[6], NC_000014.8:g.58760466AC[7], NC_000014.8:g.58760466AC[8], NC_000014.8:g.58760466AC[10], NC_000014.8:g.58760466AC[11], NC_000014.8:g.58760466AC[12], NG_052999.1:g.364AC[5], NG_052999.1:g.364AC[6], NG_052999.1:g.364AC[7], NG_052999.1:g.364AC[8], NG_052999.1:g.364AC[10], NG_052999.1:g.364AC[11], NG_052999.1:g.364AC[12]

Select item 14915294703.

rs1491529470 has merged into rs907150655 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCT>-,CT,CTCTCT [Show Flanks]
Chromosome:: 14:58267032 (GRCh38)
14:58733750 (GRCh37)
Canonical SPDI:: NC_000014.9:58267024:TCTCTCTCTCT:TCTCTCT,NC_000014.9:58267024:TCTCTCTCTCT:TCTCTCTCT,NC_000014.9:58267024:TCTCTCTCTCT:TCTCTCTCTCTCT
Gene:: PSMA3 (Varview), PSMA3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTCTCTCT=0./0 (ALFA)
TC=0.000038/10 (TOPMED)
HGVS:: NC_000014.9:g.58267026CT[3], NC_000014.9:g.58267026CT[4], NC_000014.9:g.58267026CT[6], NC_000014.8:g.58733744CT[3], NC_000014.8:g.58733744CT[4], NC_000014.8:g.58733744CT[6], NR_029434.1:n.814GA[3], NR_029434.1:n.814GA[4], NR_029434.1:n.814GA[6], NR_029435.1:n.773GA[3], NR_029435.1:n.773GA[4], NR_029435.1:n.773GA[6]

Select item 14915141684.

rs1491514168 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 14:58292595 (GRCh38)
14:58759313 (GRCh37)
Canonical SPDI:: NC_000014.9:58292594:AG:
Gene:: PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000014.9:g.58292595_58292596del, NC_000014.8:g.58759313_58759314del

Select item 14914987275.

rs1491498727 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 14:58274245 (GRCh38)
14:58740963 (GRCh37)
Canonical SPDI:: NC_000014.9:58274244:CA:
Gene:: PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.58274245_58274246del, NC_000014.8:g.58740963_58740964del

Select item 14914740766.

rs1491474076 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 14:58271327 (GRCh38)
14:58738045 (GRCh37)
Canonical SPDI:: NC_000014.9:58271325:TCT:T
Gene:: PSMA3 (Varview), PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000084/1 (ALFA)
-=0.000028/3 (GnomAD)
-=0.000035/1 (TOMMO)
HGVS:: NC_000014.9:g.58271327_58271328del, NC_000014.8:g.58738045_58738046del

Select item 14914198097.

rs1491419809 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 14:58281734 (GRCh38)
14:58748452 (GRCh37)
Canonical SPDI:: NC_000014.9:58281733:CT:
Gene:: PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000014.9:g.58281734_58281735del, NC_000014.8:g.58748452_58748453del

Select item 14913999488.

rs1491399948 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 14:58274245 (GRCh38)
14:58740964 (GRCh37)
Canonical SPDI:: NC_000014.9:58274245:A:AA
Gene:: PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.58274246dup, NC_000014.8:g.58740964dup

Select item 14913780169.

rs1491378016 [Homo sapiens]

Variant type:: DEL
Alleles:: GT>- [Show Flanks]
Chromosome:: 14:58287317 (GRCh38)
14:58754035 (GRCh37)
Canonical SPDI:: NC_000014.9:58287316:GT:
Gene:: LINC00216 (Varview), PSMA3-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000015/4 (TOPMED)
-=0.000021/3 (GnomAD)
HGVS:: NC_000014.9:g.58287317_58287318del, NC_000014.8:g.58754035_58754036del

Select item 149137423110.

rs1491374231 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 14:58287317 (GRCh38)
14:58754036 (GRCh37)
Canonical SPDI:: NC_000014.9:58287317:T:TT
Gene:: LINC00216 (Varview), PSMA3-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000014.9:g.58287318dup, NC_000014.8:g.58754036dup

Select item 149126389911.

rs1491263899 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CC [Show Flanks]
Chromosome:: 14:58293764 (GRCh38)
14:58760483 (GRCh37)
Canonical SPDI:: NC_000014.9:58293764:CC:CCCC
Gene:: PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CCCC=0./0 (ALFA)
CC=0.000039/5 (GnomAD)
HGVS:: NC_000014.9:g.58293765_58293766dup, NC_000014.8:g.58760483_58760484dup, NG_052999.1:g.381_382dup

Select item 149125240912.

rs1491252409 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 14:58266098 (GRCh38)
14:58732817 (GRCh37)
Canonical SPDI:: NC_000014.9:58266098:A:AA
Gene:: PSMA3 (Varview), PSMA3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.58266099dup, NC_000014.8:g.58732817dup, NR_029434.1:n.1749dup, NR_029435.1:n.1708dup

Select item 149124621513.

rs1491246215 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 14:58271326 (GRCh38)
14:58738045 (GRCh37)
Canonical SPDI:: NC_000014.9:58271326:C:CC
Gene:: PSMA3 (Varview), PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
HGVS:: NC_000014.9:g.58271327dup, NC_000014.8:g.58738045dup

Select item 149120203014.

rs1491202030 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CC [Show Flanks]
Chromosome:: 14:58267025 (GRCh38)
14:58733744 (GRCh37)
Canonical SPDI:: NC_000014.9:58267025:C:CCC
Gene:: PSMA3 (Varview), PSMA3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCC=0.000224/1 (ALFA)
CC=0.000007/1 (GnomAD)
CC=0.000223/1 (Estonian)
HGVS:: NC_000014.9:g.58267026_58267027insCC, NC_000014.8:g.58733744_58733745insCC, NR_029434.1:n.822_823insGG, NR_029435.1:n.781_782insGG

Select item 149103838615.

rs1491038386 has merged into rs60528514 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 14:58271337 (GRCh38)
14:58738055 (GRCh37)
Canonical SPDI:: NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:58271327:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: PSMA3 (Varview), PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
-=0.1937/970 (1000Genomes)
HGVS:: NC_000014.9:g.58271337_58271347del, NC_000014.9:g.58271338_58271347del, NC_000014.9:g.58271339_58271347del, NC_000014.9:g.58271340_58271347del, NC_000014.9:g.58271341_58271347del, NC_000014.9:g.58271342_58271347del, NC_000014.9:g.58271343_58271347del, NC_000014.9:g.58271344_58271347del, NC_000014.9:g.58271345_58271347del, NC_000014.9:g.58271346_58271347del, NC_000014.9:g.58271347del, NC_000014.9:g.58271347dup, NC_000014.9:g.58271346_58271347dup, NC_000014.9:g.58271345_58271347dup, NC_000014.9:g.58271344_58271347dup, NC_000014.9:g.58271343_58271347dup, NC_000014.9:g.58271342_58271347dup, NC_000014.9:g.58271341_58271347dup, NC_000014.9:g.58271340_58271347dup, NC_000014.9:g.58271339_58271347dup, NC_000014.9:g.58271338_58271347dup, NC_000014.9:g.58271347_58271348insTTTTTTTTTTTTTTTTTTTTTTTT, NC_000014.8:g.58738055_58738065del, NC_000014.8:g.58738056_58738065del, NC_000014.8:g.58738057_58738065del, NC_000014.8:g.58738058_58738065del, NC_000014.8:g.58738059_58738065del, NC_000014.8:g.58738060_58738065del, NC_000014.8:g.58738061_58738065del, NC_000014.8:g.58738062_58738065del, NC_000014.8:g.58738063_58738065del, NC_000014.8:g.58738064_58738065del, NC_000014.8:g.58738065del, NC_000014.8:g.58738065dup, NC_000014.8:g.58738064_58738065dup, NC_000014.8:g.58738063_58738065dup, NC_000014.8:g.58738062_58738065dup, NC_000014.8:g.58738061_58738065dup, NC_000014.8:g.58738060_58738065dup, NC_000014.8:g.58738059_58738065dup, NC_000014.8:g.58738058_58738065dup, NC_000014.8:g.58738057_58738065dup, NC_000014.8:g.58738056_58738065dup, NC_000014.8:g.58738065_58738066insTTTTTTTTTTTTTTTTTTTTTTTT

Select item 149097974516.

rs1490979745 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:58283046 (GRCh38)
14:58749764 (GRCh37)
Canonical SPDI:: NC_000014.9:58283045:C:T
Gene:: PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000014.9:g.58283046C>T, NC_000014.8:g.58749764C>T

Select item 149084714017.

rs1490847140 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:58270638 (GRCh38)
14:58737356 (GRCh37)
Canonical SPDI:: NC_000014.9:58270637:G:A
Gene:: PSMA3 (Varview), PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.58270638G>A, NC_000014.8:g.58737356G>A

Select item 149083684118.

rs1490836841 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:58290522 (GRCh38)
14:58757240 (GRCh37)
Canonical SPDI:: NC_000014.9:58290521:T:C
Gene:: PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.58290522T>C, NC_000014.8:g.58757240T>C

Select item 149071900719.

rs1490719007 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:58277115 (GRCh38)
14:58743833 (GRCh37)
Canonical SPDI:: NC_000014.9:58277114:C:T
Gene:: PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000014.9:g.58277115C>T, NC_000014.8:g.58743833C>T

Select item 149069916720.

rs1490699167 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:58289626 (GRCh38)
14:58756344 (GRCh37)
Canonical SPDI:: NC_000014.9:58289625:T:C
Gene:: LINC00216 (Varview), PSMA3-AS1 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000014.9:g.58289626T>C, NC_000014.8:g.58756344T>C

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