SNP Links for Gene (Select 3725) - SNP

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Select item 14898700921.

rs1489870092 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:58784974 (GRCh38)
1:59250646 (GRCh37)
Canonical SPDI:: NC_000001.11:58784973:A:G
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.58784974A>G, NC_000001.10:g.59250646A>G, NG_047027.1:g.4140T>C

Select item 14885318702.

rs1488531870 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:58784550 (GRCh38)
1:59250222 (GRCh37)
Canonical SPDI:: NC_000001.11:58784549:G:T
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.58784550G>T, NC_000001.10:g.59250222G>T, NG_047027.1:g.4564C>A

Select item 14877517743.

rs1487751774 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 1:58784327 (GRCh38)
1:59249999 (GRCh37)
Canonical SPDI:: NC_000001.11:58784326:GGG:GG
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.58784329del, NC_000001.10:g.59250001del, NG_047027.1:g.4787del

Select item 14877199014.

rs1487719901 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:58783613 (GRCh38)
1:59249285 (GRCh37)
Canonical SPDI:: NC_000001.11:58783612:G:A
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: upstream_transcript_variant,5_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.58783613G>A, NC_000001.10:g.59249285G>A, NG_047027.1:g.5501C>T, NM_002228.4:c.-543C>T, NM_002228.3:c.-543C>T

Select item 14873716985.

rs1487371698 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:58784481 (GRCh38)
1:59250153 (GRCh37)
Canonical SPDI:: NC_000001.11:58784480:A:T
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.58784481A>T, NC_000001.10:g.59250153A>T, NG_047027.1:g.4633T>A

Select item 14870112506.

rs1487011250 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:58783827 (GRCh38)
1:59249499 (GRCh37)
Canonical SPDI:: NC_000001.11:58783826:G:C
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: upstream_transcript_variant,5_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.001092/2 (Korea1K)
HGVS:: NC_000001.11:g.58783827G>C, NC_000001.10:g.59249499G>C, NG_047027.1:g.5287C>G, NM_002228.4:c.-757C>G, NM_002228.3:c.-757C>G

Select item 14853355207.

rs1485335520 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:58782502 (GRCh38)
1:59248174 (GRCh37)
Canonical SPDI:: NC_000001.11:58782501:T:A
Gene:: JUN (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000006/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.58782502T>A, NC_000001.10:g.59248174T>A, NG_047027.1:g.6612A>T, NM_002228.4:c.569A>T, NM_002228.3:c.569A>T, NP_002219.1:p.Tyr190Phe

Select item 14838672858.

rs1483867285 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:58785444 (GRCh38)
1:59251116 (GRCh37)
Canonical SPDI:: NC_000001.11:58785443:C:T
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.58785444C>T, NC_000001.10:g.59251116C>T, NG_047027.1:g.3670G>A

Select item 14837408889.

rs1483740888 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:58784425 (GRCh38)
1:59250097 (GRCh37)
Canonical SPDI:: NC_000001.11:58784424:A:G
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.58784425A>G, NC_000001.10:g.59250097A>G, NG_047027.1:g.4689T>C

Select item 148369631010.

rs1483696310 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:58782285 (GRCh38)
1:59247957 (GRCh37)
Canonical SPDI:: NC_000001.11:58782284:G:A
Gene:: JUN (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by cluster
MAF:: A=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000001.11:g.58782285G>A, NC_000001.10:g.59247957G>A, NG_047027.1:g.6829C>T, NM_002228.4:c.786C>T, NM_002228.3:c.786C>T

Select item 148358190411.

rs1483581904 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 1:58782938 (GRCh38)
1:59248610 (GRCh37)
Canonical SPDI:: NC_000001.11:58782937:G:A,NC_000001.11:58782937:G:C,NC_000001.11:58782937:G:T
Gene:: JUN (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.58782938G>A, NC_000001.11:g.58782938G>C, NC_000001.11:g.58782938G>T, NC_000001.10:g.59248610G>A, NC_000001.10:g.59248610G>C, NC_000001.10:g.59248610G>T, NG_047027.1:g.6176C>T, NG_047027.1:g.6176C>G, NG_047027.1:g.6176C>A, NM_002228.4:c.133C>T, NM_002228.4:c.133C>G, NM_002228.4:c.133C>A, NM_002228.3:c.133C>T, NM_002228.3:c.133C>G, NM_002228.3:c.133C>A, NP_002219.1:p.Pro45Ser, NP_002219.1:p.Pro45Ala, NP_002219.1:p.Pro45Thr

Select item 148305212212.

rs1483052122 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:58783759 (GRCh38)
1:59249431 (GRCh37)
Canonical SPDI:: NC_000001.11:58783758:C:A
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.58783759C>A, NC_000001.10:g.59249431C>A, NG_047027.1:g.5355G>T, NM_002228.4:c.-689G>T, NM_002228.3:c.-689G>T

Select item 148262418113.

rs1482624181 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:58783457 (GRCh38)
1:59249129 (GRCh37)
Canonical SPDI:: NC_000001.11:58783456:G:A
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.58783457G>A, NC_000001.10:g.59249129G>A, NG_047027.1:g.5657C>T, NM_002228.4:c.-387C>T, NM_002228.3:c.-387C>T

Select item 148256013214.

rs1482560132 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:58783785 (GRCh38)
1:59249457 (GRCh37)
Canonical SPDI:: NC_000001.11:58783784:G:C
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000162/3 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
C=0.00067/3 (Estonian)
HGVS:: NC_000001.11:g.58783785G>C, NC_000001.10:g.59249457G>C, NG_047027.1:g.5329C>G, NM_002228.4:c.-715C>G, NM_002228.3:c.-715C>G

Select item 148248474215.

rs1482484742 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:58785345 (GRCh38)
1:59251017 (GRCh37)
Canonical SPDI:: NC_000001.11:58785344:C:G,NC_000001.11:58785344:C:T
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.58785345C>G, NC_000001.11:g.58785345C>T, NC_000001.10:g.59251017C>G, NC_000001.10:g.59251017C>T, NG_047027.1:g.3769G>C, NG_047027.1:g.3769G>A

Select item 148242150516.

rs1482421505 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 1:58780370 (GRCh38)
1:59246043 (GRCh37)
Canonical SPDI:: NC_000001.11:58780370:TT:TTT
Gene:: JUN (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000045/12 (TOPMED)
HGVS:: NC_000001.11:g.58780372dup, NC_000001.10:g.59246044dup, NG_047027.1:g.8743dup

Select item 148206766317.

rs1482067663 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:58783361 (GRCh38)
1:59249033 (GRCh37)
Canonical SPDI:: NC_000001.11:58783360:C:A,NC_000001.11:58783360:C:T
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.58783361C>A, NC_000001.11:g.58783361C>T, NC_000001.10:g.59249033C>A, NC_000001.10:g.59249033C>T, NG_047027.1:g.5753G>T, NG_047027.1:g.5753G>A, NM_002228.4:c.-291G>T, NM_002228.4:c.-291G>A, NM_002228.3:c.-291G>T, NM_002228.3:c.-291G>A

Select item 148162361018.

rs1481623610 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 1:58782307 (GRCh38)
1:59247979 (GRCh37)
Canonical SPDI:: NC_000001.11:58782306:G:A,NC_000001.11:58782306:G:C,NC_000001.11:58782306:G:T
Gene:: JUN (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by cluster
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.58782307G>A, NC_000001.11:g.58782307G>C, NC_000001.11:g.58782307G>T, NC_000001.10:g.59247979G>A, NC_000001.10:g.59247979G>C, NC_000001.10:g.59247979G>T, NG_047027.1:g.6807C>T, NG_047027.1:g.6807C>G, NG_047027.1:g.6807C>A, NM_002228.4:c.764C>T, NM_002228.4:c.764C>G, NM_002228.4:c.764C>A, NM_002228.3:c.764C>T, NM_002228.3:c.764C>G, NM_002228.3:c.764C>A, NP_002219.1:p.Ala255Val, NP_002219.1:p.Ala255Gly, NP_002219.1:p.Ala255Glu

Select item 148046404419.

rs1480464044 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:58785076 (GRCh38)
1:59250748 (GRCh37)
Canonical SPDI:: NC_000001.11:58785075:G:A
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.58785076G>A, NC_000001.10:g.59250748G>A, NG_047027.1:g.4038C>T

Select item 147950849020.

rs1479508490 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:58785064 (GRCh38)
1:59250736 (GRCh37)
Canonical SPDI:: NC_000001.11:58785063:C:T
Gene:: JUN (Varview), LINC01135 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.58785064C>T, NC_000001.10:g.59250736C>T, NG_047027.1:g.4050G>A