SNP Links for Gene (Select 340665) - SNP

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Select item 14914898111.

rs1491489811 [Homo sapiens]

Variant type:: DELINS
Alleles:: TC>- [Show Flanks]
Chromosome:: 10:93061627 (GRCh38)
10:94821384 (GRCh37)
Canonical SPDI:: NC_000010.11:93061625:CTC:C
Gene:: CYP26C1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: CT=0.0479/240 (1000Genomes)
HGVS:: NC_000010.11:g.93061627_93061628del, NC_000010.10:g.94821384_94821385del, NG_007958.1:g.5364_5365del

Select item 14910153752.

rs1491015375 has merged into rs1554931523 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>-,TATA [Show Flanks]
Chromosome:: 10:93059636 (GRCh38)
10:94819393 (GRCh37)
Canonical SPDI:: NC_000010.11:93059628:ATATATATA:ATATATA,NC_000010.11:93059628:ATATATATA:ATATATATATA
Gene:: EXOC6 (Varview), CYP26C1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATATATATATA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
AT=0.000425/7 (TOMMO)
AT=0.000546/1 (Korea1K)
HGVS:: NC_000010.11:g.93059630TA[3], NC_000010.11:g.93059630TA[5], NC_000010.10:g.94819387TA[3], NC_000010.10:g.94819387TA[5], NG_007958.1:g.3367TA[3], NG_007958.1:g.3367TA[5]

Select item 14908933663.

rs1490893366 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:93061286 (GRCh38)
10:94821043 (GRCh37)
Canonical SPDI:: NC_000010.11:93061285:G:A,NC_000010.11:93061285:G:T
Gene:: CYP26C1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000010.11:g.93061286G>A, NC_000010.11:g.93061286G>T, NC_000010.10:g.94821043G>A, NC_000010.10:g.94821043G>T, NG_007958.1:g.5023G>A, NG_007958.1:g.5023G>T, NM_183374.3:c.23G>A, NM_183374.3:c.23G>T, NM_183374.2:c.23G>A, NM_183374.2:c.23G>T, NP_899230.2:p.Cys8Tyr, NP_899230.2:p.Cys8Phe

Select item 14908033704.

rs1490803370 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:93061939 (GRCh38)
10:94821696 (GRCh37)
Canonical SPDI:: NC_000010.11:93061938:C:T
Gene:: CYP26C1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.93061939C>T, NC_000010.10:g.94821696C>T, NG_007958.1:g.5676C>T

Select item 14907375535.

rs1490737553 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:93060075 (GRCh38)
10:94819832 (GRCh37)
Canonical SPDI:: NC_000010.11:93060074:G:A
Gene:: CYP26C1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00002/1 (GnomAD)
HGVS:: NC_000010.11:g.93060075G>A, NC_000010.10:g.94819832G>A, NG_007958.1:g.3812G>A

Select item 14905186866.

rs1490518686 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:93068981 (GRCh38)
10:94828738 (GRCh37)
Canonical SPDI:: NC_000010.11:93068980:A:G
Gene:: CYP26C1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.93068981A>G, NC_000010.10:g.94828738A>G, NG_007958.1:g.12718A>G, NM_183374.3:c.*284A>G, NG_008067.1:g.507A>G

Select item 14903680957.

rs1490368095 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:93066111 (GRCh38)
10:94825868 (GRCh37)
Canonical SPDI:: NC_000010.11:93066110:C:A,NC_000010.11:93066110:C:T
Gene:: CYP26C1 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.93066111C>A, NC_000010.11:g.93066111C>T, NC_000010.10:g.94825868C>A, NC_000010.10:g.94825868C>T, NG_007958.1:g.9848C>A, NG_007958.1:g.9848C>T, NM_183374.3:c.1017C>A, NM_183374.3:c.1017C>T, NM_183374.2:c.1017C>A, NM_183374.2:c.1017C>T

Select item 14901051028.

rs1490105102 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 10:93061995 (GRCh38)
10:94821752 (GRCh37)
Canonical SPDI:: NC_000010.11:93061994:C:G,NC_000010.11:93061994:C:T
Gene:: CYP26C1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
G=0.000034/5 (GnomAD_exomes)
HGVS:: NC_000010.11:g.93061995C>G, NC_000010.11:g.93061995C>T, NC_000010.10:g.94821752C>G, NC_000010.10:g.94821752C>T, NG_007958.1:g.5732C>G, NG_007958.1:g.5732C>T

Select item 14900704309.

rs1490070430 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:93064230 (GRCh38)
10:94823987 (GRCh37)
Canonical SPDI:: NC_000010.11:93064229:C:T
Gene:: CYP26C1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.93064230C>T, NC_000010.10:g.94823987C>T, NG_007958.1:g.7967C>T

Select item 148995575010.

rs1489955750 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:93063128 (GRCh38)
10:94822885 (GRCh37)
Canonical SPDI:: NC_000010.11:93063127:G:T
Gene:: CYP26C1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.93063128G>T, NC_000010.10:g.94822885G>T, NG_007958.1:g.6865G>T

Select item 148979160011.

rs1489791600 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:93066590 (GRCh38)
10:94826347 (GRCh37)
Canonical SPDI:: NC_000010.11:93066589:G:A
Gene:: CYP26C1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.000023/6 (TOPMED)
A=0.000106/2 (TOMMO)
A=0.000342/1 (KOREAN)
A=0.000546/1 (Korea1K)
HGVS:: NC_000010.11:g.93066590G>A, NC_000010.10:g.94826347G>A, NG_007958.1:g.10327G>A

Select item 148978185912.

rs1489781859 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:93068517 (GRCh38)
10:94828274 (GRCh37)
Canonical SPDI:: NC_000010.11:93068516:G:A
Gene:: CYP26C1 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency
MAF:: A=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000010.11:g.93068517G>A, NC_000010.10:g.94828274G>A, NG_007958.1:g.12254G>A, NM_183374.3:c.1389G>A, NM_183374.2:c.1389G>A, NG_008067.1:g.43G>A

Select item 148946403213.

rs1489464032 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:93064098 (GRCh38)
10:94823855 (GRCh37)
Canonical SPDI:: NC_000010.11:93064097:C:T
Gene:: CYP26C1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.93064098C>T, NC_000010.10:g.94823855C>T, NG_007958.1:g.7835C>T

Select item 148915056914.

rs1489150569 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:93068723 (GRCh38)
10:94828480 (GRCh37)
Canonical SPDI:: NC_000010.11:93068722:T:C
Gene:: CYP26C1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000010.11:g.93068723T>C, NC_000010.10:g.94828480T>C, NG_007958.1:g.12460T>C, NM_183374.3:c.*26T>C, NG_008067.1:g.249T>C

Select item 148914727715.

rs1489147277 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:93066174 (GRCh38)
10:94825931 (GRCh37)
Canonical SPDI:: NC_000010.11:93066173:C:A,NC_000010.11:93066173:C:T
Gene:: CYP26C1 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000071/1 (TOMMO)
HGVS:: NC_000010.11:g.93066174C>A, NC_000010.11:g.93066174C>T, NC_000010.10:g.94825931C>A, NC_000010.10:g.94825931C>T, NG_007958.1:g.9911C>A, NG_007958.1:g.9911C>T, NM_183374.3:c.1080C>A, NM_183374.3:c.1080C>T, NM_183374.2:c.1080C>A, NM_183374.2:c.1080C>T

Select item 148863910616.

rs1488639106 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:93064352 (GRCh38)
10:94824109 (GRCh37)
Canonical SPDI:: NC_000010.11:93064351:C:A
Gene:: CYP26C1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.93064352C>A, NC_000010.10:g.94824109C>A, NG_007958.1:g.8089C>A

Select item 148863007017.

rs1488630070 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:93061481 (GRCh38)
10:94821238 (GRCh37)
Canonical SPDI:: NC_000010.11:93061480:C:T
Gene:: CYP26C1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000010.11:g.93061481C>T, NC_000010.10:g.94821238C>T, NG_007958.1:g.5218C>T

Select item 148856708118.

rs1488567081 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 10:93063241 (GRCh38)
10:94822998 (GRCh37)
Canonical SPDI:: NC_000010.11:93063240:C:
Gene:: CYP26C1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.93063241del, NC_000010.10:g.94822998del, NG_007958.1:g.6978del

Select item 148847452119.

rs1488474521 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 10:93063605 (GRCh38)
10:94823362 (GRCh37)
Canonical SPDI:: NC_000010.11:93063604:T:
Gene:: CYP26C1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.93063605del, NC_000010.10:g.94823362del, NG_007958.1:g.7342del

Select item 148809546620.

rs1488095466 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:93062227 (GRCh38)
10:94821984 (GRCh37)
Canonical SPDI:: NC_000010.11:93062226:G:A
Gene:: CYP26C1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.93062227G>A, NC_000010.10:g.94821984G>A, NG_007958.1:g.5964G>A, NM_183374.3:c.422G>A, NM_183374.2:c.422G>A, NP_899230.2:p.Arg141Gln

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