SNP Links for Gene (Select 339442) - SNP

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Links from Gene

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Select item 14903961351.

rs1490396135 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 1:38212187 (GRCh38)
1:38677859 (GRCh37)
Canonical SPDI:: NC_000001.11:38212186:T:A,NC_000001.11:38212186:T:C
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.38212187T>A, NC_000001.11:g.38212187T>C, NC_000001.10:g.38677859T>A, NC_000001.10:g.38677859T>C, XR_001737985.1:n.3733T>A, XR_001737985.1:n.3733T>C, XR_001737986.1:n.3176T>A, XR_001737986.1:n.3176T>C, XR_007065894.1:n.2640T>A, XR_007065894.1:n.2640T>C, NR_038928.1:n.316A>T, NR_038928.1:n.316A>G

Select item 14903645432.

rs1490364543 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:38213289 (GRCh38)
1:38678961 (GRCh37)
Canonical SPDI:: NC_000001.11:38213288:C:A
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.38213289C>A, NC_000001.10:g.38678961C>A, XR_001737987.2:n.2983C>A, XR_002958294.2:n.996C>A, XR_002958294.1:n.996C>A

Select item 14900055013.

rs1490005501 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:38215586 (GRCh38)
1:38681258 (GRCh37)
Canonical SPDI:: NC_000001.11:38215585:A:T
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.38215586A>T, NC_000001.10:g.38681258A>T, XR_001737987.2:n.5280A>T

Select item 14897464914.

rs1489746491 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:38213637 (GRCh38)
1:38679309 (GRCh37)
Canonical SPDI:: NC_000001.11:38213636:A:G
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.38213637A>G, NC_000001.10:g.38679309A>G, XR_001737987.2:n.3331A>G, XR_002958294.2:n.1344A>G

Select item 14892888125.

rs1489288812 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:38214295 (GRCh38)
1:38679967 (GRCh37)
Canonical SPDI:: NC_000001.11:38214294:G:A,NC_000001.11:38214294:G:C
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.38214295G>A, NC_000001.11:g.38214295G>C, NC_000001.10:g.38679967G>A, NC_000001.10:g.38679967G>C, XR_001737987.2:n.3989G>A, XR_001737987.2:n.3989G>C, XR_002958294.2:n.2002G>A, XR_002958294.2:n.2002G>C

Select item 14887514656.

rs1488751465 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:38209490 (GRCh38)
1:38675162 (GRCh37)
Canonical SPDI:: NC_000001.11:38209489:G:T
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.38209490G>T, NC_000001.10:g.38675162G>T, XR_001737987.2:n.1150G>T, XR_001737987.1:n.1150G>T, XR_001737985.1:n.1036G>T, XR_001737986.1:n.479G>T, NR_038928.1:n.1827C>A

Select item 14886560917.

rs1488656091 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:38216712 (GRCh38)
1:38682384 (GRCh37)
Canonical SPDI:: NC_000001.11:38216711:G:A
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: A=0.000021/3 (GnomAD)
A=0.008333/5 (NorthernSweden)
HGVS:: NC_000001.11:g.38216712G>A, NC_000001.10:g.38682384G>A, XR_001737987.2:n.6406G>A

Select item 14873282198.

rs1487328219 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:38216443 (GRCh38)
1:38682115 (GRCh37)
Canonical SPDI:: NC_000001.11:38216442:C:A,NC_000001.11:38216442:C:T
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.38216443C>A, NC_000001.11:g.38216443C>T, NC_000001.10:g.38682115C>A, NC_000001.10:g.38682115C>T, XR_001737987.2:n.6137C>A, XR_001737987.2:n.6137C>T

Select item 14869704289.

rs1486970428 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:38209055 (GRCh38)
1:38674727 (GRCh37)
Canonical SPDI:: NC_000001.11:38209054:T:G
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.38209055T>G, NC_000001.10:g.38674727T>G, NR_038928.1:n.2262A>C

Select item 148621237010.

rs1486212370 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:38212093 (GRCh38)
1:38677765 (GRCh37)
Canonical SPDI:: NC_000001.11:38212092:C:T
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.38212093C>T, NC_000001.10:g.38677765C>T, XR_001737985.1:n.3639C>T, XR_001737986.1:n.3082C>T, XR_007065894.1:n.2546C>T

Select item 148600316411.

rs1486003164 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 1:38215468 (GRCh38)
1:38681140 (GRCh37)
Canonical SPDI:: NC_000001.11:38215467:A:C,NC_000001.11:38215467:A:G
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.38215468A>C, NC_000001.11:g.38215468A>G, NC_000001.10:g.38681140A>C, NC_000001.10:g.38681140A>G, XR_001737987.2:n.5162A>C, XR_001737987.2:n.5162A>G

Select item 148570137812.

rs1485701378 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:38212493 (GRCh38)
1:38678165 (GRCh37)
Canonical SPDI:: NC_000001.11:38212492:T:C
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
HGVS:: NC_000001.11:g.38212493T>C, NC_000001.10:g.38678165T>C, XR_001737987.2:n.2688T>C, XR_001737987.1:n.2688T>C, XR_002958294.2:n.701T>C, XR_002958294.1:n.701T>C, XR_001737985.1:n.4039T>C, XR_001737986.1:n.3482T>C, XR_007065894.1:n.2946T>C

Select item 148564260113.

rs1485642601 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:38211807 (GRCh38)
1:38677479 (GRCh37)
Canonical SPDI:: NC_000001.11:38211806:G:A
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.38211807G>A, NC_000001.10:g.38677479G>A, XR_001737985.1:n.3353G>A, XR_001737986.1:n.2796G>A, XR_007065894.1:n.2260G>A, NR_038928.1:n.421C>T

Select item 148502476214.

rs1485024762 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:38214036 (GRCh38)
1:38679708 (GRCh37)
Canonical SPDI:: NC_000001.11:38214035:G:A
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.38214036G>A, NC_000001.10:g.38679708G>A, XR_001737987.2:n.3730G>A, XR_002958294.2:n.1743G>A

Select item 148482427015.

rs1484824270 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:38212307 (GRCh38)
1:38677979 (GRCh37)
Canonical SPDI:: NC_000001.11:38212306:C:A
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00008/1 (ALFA)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000001.11:g.38212307C>A, NC_000001.10:g.38677979C>A, XR_001737987.2:n.2502C>A, XR_001737987.1:n.2502C>A, XR_002958294.2:n.515C>A, XR_002958294.1:n.515C>A, XR_001737985.1:n.3853C>A, XR_001737986.1:n.3296C>A, XR_007065894.1:n.2760C>A, NR_038928.1:n.196G>T

Select item 148436899316.

rs1484368993 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:38215053 (GRCh38)
1:38680725 (GRCh37)
Canonical SPDI:: NC_000001.11:38215052:C:T
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.38215053C>T, NC_000001.10:g.38680725C>T, XR_001737987.2:n.4747C>T

Select item 148435833517.

rs1484358335 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:38212208 (GRCh38)
1:38677880 (GRCh37)
Canonical SPDI:: NC_000001.11:38212207:T:C
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.38212208T>C, NC_000001.10:g.38677880T>C, XR_001737985.1:n.3754T>C, XR_001737986.1:n.3197T>C, XR_007065894.1:n.2661T>C, NR_038928.1:n.295A>G

Select item 148434054318.

rs1484340543 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:38215578 (GRCh38)
1:38681250 (GRCh37)
Canonical SPDI:: NC_000001.11:38215577:C:T
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.38215578C>T, NC_000001.10:g.38681250C>T, XR_001737987.2:n.5272C>T

Select item 148430633719.

rs1484306337 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:38210665 (GRCh38)
1:38676337 (GRCh37)
Canonical SPDI:: NC_000001.11:38210664:A:G
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.38210665A>G, NC_000001.10:g.38676337A>G, XR_001737987.2:n.2325A>G, XR_001737987.1:n.2325A>G, XR_001737985.1:n.2211A>G, XR_001737986.1:n.1654A>G, XR_007065894.1:n.1118A>G, NR_038928.1:n.652T>C

Select item 148407008820.

rs1484070088 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:38214563 (GRCh38)
1:38680235 (GRCh37)
Canonical SPDI:: NC_000001.11:38214562:C:T
Gene:: LINC01343 (Varview), LOC105378654 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.38214563C>T, NC_000001.10:g.38680235C>T, XR_001737987.2:n.4257C>T, XR_002958294.2:n.2270C>T