SNP Links for Gene (Select 338657) - SNP

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Select item 14915797301.

rs1491579730 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 11:119008442 (GRCh38)
11:118879152 (GRCh37)
Canonical SPDI:: NC_000011.10:119008440:TAT:T
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.0002/1 (ALFA)
-=0.0002/1 (Estonian)
HGVS:: NC_000011.10:g.119008442_119008443del, NC_000011.9:g.118879152_118879153del, NG_050577.1:g.19090_19091del, NW_009646203.1:g.30042_30043del, NW_003871076.1:g.30042_30043del

Select item 14915169512.

rs1491516951 [Homo sapiens]

Variant type:: SNV:
Alleles:: GC>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14913123193.

rs1491312319 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 11:119005069 (GRCh38)
11:118875780 (GRCh37)
Canonical SPDI:: NC_000011.10:119005069::A
Gene:: CENATAC (Varview), RPL23AP64 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.0002/1 (ALFA)
A=0.0002/1 (Estonian)
HGVS:: NC_000011.10:g.119005069_119005070insA, NC_000011.9:g.118875779_118875780insA, NG_050577.1:g.15717_15718insA, NW_009646203.1:g.26669_26670insA, NW_003871076.1:g.26669_26670insA

Select item 14912792494.

rs1491279249 has merged into rs10680026 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA [Show Flanks]
Chromosome:: 11:119014969 (GRCh38)
11:118885679 (GRCh37)
Canonical SPDI:: NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000011.10:119014958:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
-=0.000091/24 (TOPMED)
AAA=0.040808/101 (1000Genomes)
HGVS:: NC_000011.10:g.119014969_119014974del, NC_000011.10:g.119014970_119014974del, NC_000011.10:g.119014971_119014974del, NC_000011.10:g.119014972_119014974del, NC_000011.10:g.119014973_119014974del, NC_000011.10:g.119014974del, NC_000011.10:g.119014974dup, NC_000011.10:g.119014973_119014974dup, NC_000011.10:g.119014972_119014974dup, NC_000011.10:g.119014971_119014974dup, NC_000011.10:g.119014970_119014974dup, NC_000011.10:g.119014969_119014974dup, NC_000011.10:g.119014968_119014974dup, NC_000011.9:g.118885679_118885684del, NC_000011.9:g.118885680_118885684del, NC_000011.9:g.118885681_118885684del, NC_000011.9:g.118885682_118885684del, NC_000011.9:g.118885683_118885684del, NC_000011.9:g.118885684del, NC_000011.9:g.118885684dup, NC_000011.9:g.118885683_118885684dup, NC_000011.9:g.118885682_118885684dup, NC_000011.9:g.118885681_118885684dup, NC_000011.9:g.118885680_118885684dup, NC_000011.9:g.118885679_118885684dup, NC_000011.9:g.118885678_118885684dup, NG_050577.1:g.25617_25622del, NG_050577.1:g.25618_25622del, NG_050577.1:g.25619_25622del, NG_050577.1:g.25620_25622del, NG_050577.1:g.25621_25622del, NG_050577.1:g.25622del, NG_050577.1:g.25622dup, NG_050577.1:g.25621_25622dup, NG_050577.1:g.25620_25622dup, NG_050577.1:g.25619_25622dup, NG_050577.1:g.25618_25622dup, NG_050577.1:g.25617_25622dup, NG_050577.1:g.25616_25622dup, NW_009646203.1:g.36569_36574del, NW_009646203.1:g.36570_36574del, NW_009646203.1:g.36571_36574del, NW_009646203.1:g.36572_36574del, NW_009646203.1:g.36573_36574del, NW_009646203.1:g.36574del, NW_009646203.1:g.36574dup, NW_009646203.1:g.36573_36574dup, NW_009646203.1:g.36572_36574dup, NW_009646203.1:g.36571_36574dup, NW_009646203.1:g.36570_36574dup, NW_009646203.1:g.36569_36574dup, NW_009646203.1:g.36568_36574dup, NW_003871076.1:g.36569_36574del, NW_003871076.1:g.36570_36574del, NW_003871076.1:g.36571_36574del, NW_003871076.1:g.36572_36574del, NW_003871076.1:g.36573_36574del, NW_003871076.1:g.36574del, NW_003871076.1:g.36574dup, NW_003871076.1:g.36573_36574dup, NW_003871076.1:g.36572_36574dup, NW_003871076.1:g.36571_36574dup, NW_003871076.1:g.36570_36574dup, NW_003871076.1:g.36569_36574dup, NW_003871076.1:g.36568_36574dup

Select item 14912767645.

rs1491276764 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 11:119014957 (GRCh38)
11:118885667 (GRCh37)
Canonical SPDI:: NC_000011.10:119014956:TT:
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000011.10:g.119014957_119014958del, NC_000011.9:g.118885667_118885668del, NG_050577.1:g.25605_25606del, NW_009646203.1:g.36557_36558del, NW_003871076.1:g.36557_36558del

Select item 14911004426.

rs1491100442 [Homo sapiens]

Variant type:: INS
Alleles:: ->A,AA,AAA,AAAA [Show Flanks]
Chromosome:: 11:119014957 (GRCh38)
11:118885668 (GRCh37)
Canonical SPDI:: NC_000011.10:119014957::A,NC_000011.10:119014957::AA,NC_000011.10:119014957::AAA,NC_000011.10:119014957::AAAA
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
HGVS:: NC_000011.10:g.119014957_119014958insA, NC_000011.10:g.119014957_119014958insAA, NC_000011.10:g.119014957_119014958insAAA, NC_000011.10:g.119014957_119014958insAAAA, NC_000011.9:g.118885667_118885668insA, NC_000011.9:g.118885667_118885668insAA, NC_000011.9:g.118885667_118885668insAAA, NC_000011.9:g.118885667_118885668insAAAA, NG_050577.1:g.25605_25606insA, NG_050577.1:g.25605_25606insAA, NG_050577.1:g.25605_25606insAAA, NG_050577.1:g.25605_25606insAAAA, NW_009646203.1:g.36557_36558insA, NW_009646203.1:g.36557_36558insAA, NW_009646203.1:g.36557_36558insAAA, NW_009646203.1:g.36557_36558insAAAA, NW_003871076.1:g.36557_36558insA, NW_003871076.1:g.36557_36558insAA, NW_003871076.1:g.36557_36558insAAA, NW_003871076.1:g.36557_36558insAAAA

Select item 14908075407.

rs1490807540 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 11:119003011 (GRCh38)
11:118873721 (GRCh37)
Canonical SPDI:: NC_000011.10:119003010:TT:T
Gene:: CENATAC (Varview), RPL23AP64 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.119003012del, NC_000011.9:g.118873722del, NG_050577.1:g.13660del, NW_009646203.1:g.24612del, NW_003871076.1:g.24612del, NR_003040.2:n.583del

Select item 14907212608.

rs1490721260 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:119007404 (GRCh38)
11:118878114 (GRCh37)
Canonical SPDI:: NC_000011.10:119007403:A:G
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00068/2 (KOREAN)
HGVS:: NC_000011.10:g.119007404A>G, NC_000011.9:g.118878114A>G, NG_050577.1:g.18052A>G, NW_009646203.1:g.29004A>G, NW_003871076.1:g.29004A>G

Select item 14905579479.

rs1490557947 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:119007887 (GRCh38)
11:118878597 (GRCh37)
Canonical SPDI:: NC_000011.10:119007886:T:C
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.119007887T>C, NC_000011.9:g.118878597T>C, NG_050577.1:g.18535T>C, NW_009646203.1:g.29487T>C, NW_003871076.1:g.29487T>C

Select item 149002681210.

rs1490026812 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:119013648 (GRCh38)
11:118884358 (GRCh37)
Canonical SPDI:: NC_000011.10:119013647:A:G
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000011.10:g.119013648A>G, NC_000011.9:g.118884358A>G, NG_050577.1:g.24296A>G, NW_009646203.1:g.35248A>G, NW_003871076.1:g.35248A>G

Select item 149000444411.

rs1490004444 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:119005933 (GRCh38)
11:118876643 (GRCh37)
Canonical SPDI:: NC_000011.10:119005932:A:T
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.0002/1 (ALFA)
T=0.025/73 (KOREAN)
HGVS:: NC_000011.10:g.119005933A>T, NC_000011.9:g.118876643A>T, NG_050577.1:g.16581A>T, NW_009646203.1:g.27533A>T, NW_003871076.1:g.27533A>T

Select item 148991951612.

rs1489919516 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:119014578 (GRCh38)
11:118885288 (GRCh37)
Canonical SPDI:: NC_000011.10:119014577:A:C
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.119014578A>C, NC_000011.9:g.118885288A>C, NG_050577.1:g.25226A>C, NW_009646203.1:g.36178A>C, NW_003871076.1:g.36178A>C

Select item 148986231513.

rs1489862315 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:119013919 (GRCh38)
11:118884629 (GRCh37)
Canonical SPDI:: NC_000011.10:119013918:A:G
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000011.10:g.119013919A>G, NC_000011.9:g.118884629A>G, NG_050577.1:g.24567A>G, NW_009646203.1:g.35519A>G, NW_003871076.1:g.35519A>G

Select item 148975974414.

rs1489759744 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAGAG>- [Show Flanks]
Chromosome:: 11:119010320 (GRCh38)
11:118881030 (GRCh37)
Canonical SPDI:: NC_000011.10:119010315:AGAGTAGAG:AGAG
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
-=0.000546/1 (Korea1K)
HGVS:: NC_000011.10:g.119010320_119010324del, NC_000011.9:g.118881030_118881034del, NG_050577.1:g.20968_20972del, NW_009646203.1:g.31920_31924del, NW_003871076.1:g.31920_31924del

Select item 148973339015.

rs1489733390 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:119009267 (GRCh38)
11:118879977 (GRCh37)
Canonical SPDI:: NC_000011.10:119009266:C:T
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000034/9 (TOPMED)
HGVS:: NC_000011.10:g.119009267C>T, NC_000011.9:g.118879977C>T, NG_050577.1:g.19915C>T, NW_009646203.1:g.30867C>T, NW_003871076.1:g.30867C>T

Select item 148960747416.

rs1489607474 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:119000157 (GRCh38)
11:118870867 (GRCh37)
Canonical SPDI:: NC_000011.10:119000156:A:T
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.119000157A>T, NC_000011.9:g.118870867A>T, NG_050577.1:g.10805A>T, NW_009646203.1:g.21757A>T, NW_003871076.1:g.21757A>T

Select item 148955984717.

rs1489559847 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GAGGTTGAGACAGGAGAA [Show Flanks]
Chromosome:: 11:119000650 (GRCh38)
11:118871361 (GRCh37)
Canonical SPDI:: NC_000011.10:119000650:GAGGTTGAGACAGGAGAA:GAGGTTGAGACAGGAGAAGAGGTTGAGACAGGAGAA
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GAGGTTGAGACAGGAGAAGAGGTTGAGACAGGAGAA=0./0 (ALFA)
GAGGTTGAGACAGGAGAA=0.000011/3 (TOPMED)
GAGGTTGAGACAGGAGAA=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.119000651_119000668dup, NC_000011.9:g.118871361_118871378dup, NG_050577.1:g.11299_11316dup, NW_009646203.1:g.22251_22268dup, NW_003871076.1:g.22251_22268dup

Select item 148955874218.

rs1489558742 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:119007246 (GRCh38)
11:118877956 (GRCh37)
Canonical SPDI:: NC_000011.10:119007245:T:C
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.119007246T>C, NC_000011.9:g.118877956T>C, NG_050577.1:g.17894T>C, NW_009646203.1:g.28846T>C, NW_003871076.1:g.28846T>C

Select item 148953839319.

rs1489538393 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:119012650 (GRCh38)
11:118883360 (GRCh37)
Canonical SPDI:: NC_000011.10:119012649:C:T
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.119012650C>T, NC_000011.9:g.118883360C>T, NG_050577.1:g.23298C>T, NW_009646203.1:g.34250C>T, NW_003871076.1:g.34250C>T

Select item 148950281120.

rs1489502811 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:119006649 (GRCh38)
11:118877359 (GRCh37)
Canonical SPDI:: NC_000011.10:119006648:G:A
Gene:: CENATAC (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000142/2 (ALFA)
A=0.000071/1 (TOMMO)
A=0.000076/20 (TOPMED)
A=0.000078/11 (GnomAD)
HGVS:: NC_000011.10:g.119006649G>A, NC_000011.9:g.118877359G>A, NG_050577.1:g.17297G>A, NW_009646203.1:g.28249G>A, NW_003871076.1:g.28249G>A

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