SNP Links for Gene (Select 338428) - SNP

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Select item 14862213901.

rs1486221390 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25041577 (GRCh38)
15:25286724 (GRCh37)
Canonical SPDI:: NC_000015.10:25041576:T:C
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25041577T>C, NC_000015.9:g.25286724T>C, NG_002690.1:g.260668T>C

Select item 14861584992.

rs1486158499 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25042467 (GRCh38)
15:25287614 (GRCh37)
Canonical SPDI:: NC_000015.10:25042466:C:T
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25042467C>T, NC_000015.9:g.25287614C>T, NG_002690.1:g.261558C>T

Select item 14861154703.

rs1486115470 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25041907 (GRCh38)
15:25287054 (GRCh37)
Canonical SPDI:: NC_000015.10:25041906:A:G
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
G=0.000071/2 (TOMMO)
HGVS:: NC_000015.10:g.25041907A>G, NC_000015.9:g.25287054A>G, NG_002690.1:g.260998A>G

Select item 14855638254.

rs1485563825 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25042454 (GRCh38)
15:25287601 (GRCh37)
Canonical SPDI:: NC_000015.10:25042453:C:T
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25042454C>T, NC_000015.9:g.25287601C>T, NG_002690.1:g.261545C>T

Select item 14842716425.

rs1484271642 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:25040171 (GRCh38)
15:25285318 (GRCh37)
Canonical SPDI:: NC_000015.10:25040170:G:A,NC_000015.10:25040170:G:C
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25040171G>A, NC_000015.10:g.25040171G>C, NC_000015.9:g.25285318G>A, NC_000015.9:g.25285318G>C, NG_002690.1:g.259262G>A, NG_002690.1:g.259262G>C

Select item 14842613126.

rs1484261312 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 15:25040788 (GRCh38)
15:25285935 (GRCh37)
Canonical SPDI:: NC_000015.10:25040787:C:A,NC_000015.10:25040787:C:G
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000015.10:g.25040788C>A, NC_000015.10:g.25040788C>G, NC_000015.9:g.25285935C>A, NC_000015.9:g.25285935C>G, NG_002690.1:g.259879C>A, NG_002690.1:g.259879C>G

Select item 14834072457.

rs1483407245 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:25041970 (GRCh38)
15:25287117 (GRCh37)
Canonical SPDI:: NC_000015.10:25041969:G:C
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25041970G>C, NC_000015.9:g.25287117G>C, NG_002690.1:g.261061G>C

Select item 14824112628.

rs1482411262 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:25042076 (GRCh38)
15:25287223 (GRCh37)
Canonical SPDI:: NC_000015.10:25042075:T:G
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25042076T>G, NC_000015.9:g.25287223T>G, NG_002690.1:g.261167T>G

Select item 14822021219.

rs1482202121 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25040277 (GRCh38)
15:25285424 (GRCh37)
Canonical SPDI:: NC_000015.10:25040276:A:G
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25040277A>G, NC_000015.9:g.25285424A>G, NG_002690.1:g.259368A>G

Select item 147832557710.

rs1478325577 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25042533 (GRCh38)
15:25287680 (GRCh37)
Canonical SPDI:: NC_000015.10:25042532:C:T
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25042533C>T, NC_000015.9:g.25287680C>T, NG_002690.1:g.261624C>T

Select item 147759537211.

rs1477595372 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25041343 (GRCh38)
15:25286490 (GRCh37)
Canonical SPDI:: NC_000015.10:25041342:A:G
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25041343A>G, NC_000015.9:g.25286490A>G, NG_002690.1:g.260434A>G

Select item 147702671612.

rs1477026716 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 15:25042089 (GRCh38)
15:25287236 (GRCh37)
Canonical SPDI:: NC_000015.10:25042088:C:
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
HGVS:: NC_000015.10:g.25042089del, NC_000015.9:g.25287236del, NG_002690.1:g.261180del

Select item 147609658713.

rs1476096587 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25042428 (GRCh38)
15:25287575 (GRCh37)
Canonical SPDI:: NC_000015.10:25042427:A:G
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.25042428A>G, NC_000015.9:g.25287575A>G, NG_002690.1:g.261519A>G

Select item 147497418614.

rs1474974186 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 15:25042112 (GRCh38)
15:25287259 (GRCh37)
Canonical SPDI:: NC_000015.10:25042111:AA:A
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
-=0.00005/7 (GnomAD)
HGVS:: NC_000015.10:g.25042113del, NC_000015.9:g.25287260del, NG_002690.1:g.261204del

Select item 147357524015.

rs1473575240 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TTA [Show Flanks]
Chromosome:: 15:25040720 (GRCh38)
15:25285868 (GRCh37)
Canonical SPDI:: NC_000015.10:25040720:ATTATTA:ATTATTATTA
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATTATTATTA=0./0 (ALFA)
ATT=0.000011/3 (TOPMED)
ATT=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.25040722TTA[3], NC_000015.9:g.25285869TTA[3], NG_002690.1:g.259813TTA[3]

Select item 147268748216.

rs1472687482 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATTTTTTATA>- [Show Flanks]
Chromosome:: 15:25040999 (GRCh38)
15:25286146 (GRCh37)
Canonical SPDI:: NC_000015.10:25040989:TTTTTTATATATTTTTTATA:TTTTTTATA
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTATA=0./0 (ALFA)
-=0.000043/6 (GnomAD)
-=0.000064/17 (TOPMED)
HGVS:: NC_000015.10:g.25040999_25041009del, NC_000015.9:g.25286146_25286156del, NG_002690.1:g.260090_260100del

Select item 147171843017.

rs1471718430 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25040123 (GRCh38)
15:25285270 (GRCh37)
Canonical SPDI:: NC_000015.10:25040122:G:A
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000066/1 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000223/1 (Estonian)
HGVS:: NC_000015.10:g.25040123G>A, NC_000015.9:g.25285270G>A, NG_002690.1:g.259214G>A

Select item 146923065118.

rs1469230651 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25040547 (GRCh38)
15:25285694 (GRCh37)
Canonical SPDI:: NC_000015.10:25040546:A:G
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25040547A>G, NC_000015.9:g.25285694A>G, NG_002690.1:g.259638A>G

Select item 146855945819.

rs1468559458 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 15:25041262 (GRCh38)
15:25286409 (GRCh37)
Canonical SPDI:: NC_000015.10:25041261:T:C,NC_000015.10:25041261:T:G
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000015.10:g.25041262T>C, NC_000015.10:g.25041262T>G, NC_000015.9:g.25286409T>C, NC_000015.9:g.25286409T>G, NG_002690.1:g.260353T>C, NG_002690.1:g.260353T>G

Select item 146803057720.

rs1468030577 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25042003 (GRCh38)
15:25287150 (GRCh37)
Canonical SPDI:: NC_000015.10:25042002:A:G
Gene:: SNORD109A (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25042003A>G, NC_000015.9:g.25287150A>G, NG_002690.1:g.261094A>G, NR_001295.1:n.30A>G

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