SNP Links for Gene (Select 3362) - SNP

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Items: 1 to 20 of 4342

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Select item 14914009631.

rs1491400963 has merged into rs34322917 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTT>-,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 1:19674418 (GRCh38)
1:20000911 (GRCh37)
Canonical SPDI:: NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000001.11:19674406:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.19674418_19674424del, NC_000001.11:g.19674420_19674424del, NC_000001.11:g.19674421_19674424del, NC_000001.11:g.19674422_19674424del, NC_000001.11:g.19674423_19674424del, NC_000001.11:g.19674424del, NC_000001.11:g.19674424dup, NC_000001.11:g.19674423_19674424dup, NC_000001.11:g.19674422_19674424dup, NC_000001.11:g.19674421_19674424dup, NC_000001.11:g.19674420_19674424dup, NC_000001.11:g.19674419_19674424dup, NC_000001.11:g.19674418_19674424dup, NC_000001.11:g.19674417_19674424dup, NC_000001.10:g.20000911_20000917del, NC_000001.10:g.20000913_20000917del, NC_000001.10:g.20000914_20000917del, NC_000001.10:g.20000915_20000917del, NC_000001.10:g.20000916_20000917del, NC_000001.10:g.20000917del, NC_000001.10:g.20000917dup, NC_000001.10:g.20000916_20000917dup, NC_000001.10:g.20000915_20000917dup, NC_000001.10:g.20000914_20000917dup, NC_000001.10:g.20000913_20000917dup, NC_000001.10:g.20000912_20000917dup, NC_000001.10:g.20000911_20000917dup, NC_000001.10:g.20000910_20000917dup

Select item 14908969472.

rs1490896947 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:19675230 (GRCh38)
1:20001723 (GRCh37)
Canonical SPDI:: NC_000001.11:19675229:G:A
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.19675230G>A, NC_000001.10:g.20001723G>A

Select item 14907551833.

rs1490755183 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:19673154 (GRCh38)
1:19999647 (GRCh37)
Canonical SPDI:: NC_000001.11:19673153:T:C
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.19673154T>C, NC_000001.10:g.19999647T>C

Select item 14905750864.

rs1490575086 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:19665793 (GRCh38)
1:19992286 (GRCh37)
Canonical SPDI:: NC_000001.11:19665792:G:A
Gene:: HTR6 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
HGVS:: NC_000001.11:g.19665793G>A, NC_000001.10:g.19992286G>A, NM_000871.3:c.40G>A, NM_000871.2:c.40G>A, NM_000871.1:c.40G>A, NP_000862.1:p.Ala14Thr

Select item 14904077085.

rs1490407708 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:19674746 (GRCh38)
1:20001239 (GRCh37)
Canonical SPDI:: NC_000001.11:19674745:A:G
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.19674746A>G, NC_000001.10:g.20001239A>G

Select item 14903188416.

rs1490318841 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:19677565 (GRCh38)
1:20004058 (GRCh37)
Canonical SPDI:: NC_000001.11:19677564:T:C
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.19677565T>C, NC_000001.10:g.20004058T>C

Select item 14897288247.

rs1489728824 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:19666049 (GRCh38)
1:19992542 (GRCh37)
Canonical SPDI:: NC_000001.11:19666048:G:A
Gene:: HTR6 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
HGVS:: NC_000001.11:g.19666049G>A, NC_000001.10:g.19992542G>A, NM_000871.3:c.296G>A, NM_000871.2:c.296G>A, NM_000871.1:c.296G>A, NP_000862.1:p.Cys99Tyr

Select item 14894920048.

rs1489492004 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:19670422 (GRCh38)
1:19996915 (GRCh37)
Canonical SPDI:: NC_000001.11:19670421:C:T
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.19670422C>T, NC_000001.10:g.19996915C>T

Select item 14894638929.

rs1489463892 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:19669402 (GRCh38)
1:19995895 (GRCh37)
Canonical SPDI:: NC_000001.11:19669401:C:T
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.19669402C>T, NC_000001.10:g.19995895C>T

Select item 148944734710.

rs1489447347 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:19668473 (GRCh38)
1:19994966 (GRCh37)
Canonical SPDI:: NC_000001.11:19668472:G:A
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.19668473G>A, NC_000001.10:g.19994966G>A

Select item 148940343711.

rs1489403437 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:19666349 (GRCh38)
1:19992842 (GRCh37)
Canonical SPDI:: NC_000001.11:19666348:T:A
Gene:: HTR6 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: A=0.000111/1 (ALFA)
A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.19666349T>A, NC_000001.10:g.19992842T>A, NM_000871.3:c.596T>A, NM_000871.2:c.596T>A, NM_000871.1:c.596T>A, NP_000862.1:p.Leu199Gln

Select item 148907401412.

rs1489074014 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:19679065 (GRCh38)
1:20005558 (GRCh37)
Canonical SPDI:: NC_000001.11:19679064:T:C
Gene:: HTR6 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.19679065T>C, NC_000001.10:g.20005558T>C, NM_000871.3:c.1020T>C, NM_000871.2:c.1020T>C, NM_000871.1:c.1020T>C

Select item 148868604913.

rs1488686049 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:19678226 (GRCh38)
1:20004719 (GRCh37)
Canonical SPDI:: NC_000001.11:19678225:G:A
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.19678226G>A, NC_000001.10:g.20004719G>A

Select item 148847692414.

rs1488476924 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:19668824 (GRCh38)
1:19995317 (GRCh37)
Canonical SPDI:: NC_000001.11:19668823:A:G
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
HGVS:: NC_000001.11:g.19668824A>G, NC_000001.10:g.19995317A>G

Select item 148832118515.

rs1488321185 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:19671711 (GRCh38)
1:19998204 (GRCh37)
Canonical SPDI:: NC_000001.11:19671710:G:A
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.19671711G>A, NC_000001.10:g.19998204G>A

Select item 148783323216.

rs1487833232 [Homo sapiens]

Variant type:: INS
Alleles:: ->A [Show Flanks]
Chromosome:: 1:19667402 (GRCh38)
1:19993896 (GRCh37)
Canonical SPDI:: NC_000001.11:19667402::A
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.19667402_19667403insA, NC_000001.10:g.19993895_19993896insA

Select item 148759206917.

rs1487592069 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:19670536 (GRCh38)
1:19997029 (GRCh37)
Canonical SPDI:: NC_000001.11:19670535:C:T
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.19670536C>T, NC_000001.10:g.19997029C>T

Select item 148667437318.

rs1486674373 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:19664480 (GRCh38)
1:19990973 (GRCh37)
Canonical SPDI:: NC_000001.11:19664479:T:C
Gene:: HTR6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.19664480T>C, NC_000001.10:g.19990973T>C

Select item 148637689219.

rs1486376892 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:19673836 (GRCh38)
1:20000329 (GRCh37)
Canonical SPDI:: NC_000001.11:19673835:A:C
Gene:: HTR6 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.0002/1 (ALFA)
C=0.0002/1 (Estonian)
HGVS:: NC_000001.11:g.19673836A>C, NC_000001.10:g.20000329A>C

Select item 148633539920.

rs1486335399 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:19663779 (GRCh38)
1:19990272 (GRCh37)
Canonical SPDI:: NC_000001.11:19663778:G:A
Gene:: HTR6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/1 (GnomAD)
HGVS:: NC_000001.11:g.19663779G>A, NC_000001.10:g.19990272G>A

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