SNP Links for Gene (Select 333932) - SNP

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Select item 14846286741.

rs1484628674 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:149850787 (GRCh38)
1:149822354 (GRCh37)
Canonical SPDI:: NC_000001.11:149850786:A:T
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.03794/450 (ALFA)
T=0.04599/63 (KOREAN)
HGVS:: NC_000001.11:g.149850787A>T, NW_003871055.3:g.6666200A>T, NC_000001.10:g.149822354A>T, XM_024451708.2:c.*4299T>A, XM_047424434.1:c.*4869T>A, XM_047424439.1:c.*4513T>A, XM_047424442.1:c.*4119T>A

Select item 14630588572.

rs1463058857 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 1:149850745 (GRCh38)
1:149822313 (GRCh37)
Canonical SPDI:: NC_000001.11:149850745:CC:CCC
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_downstream_transcript_variant,non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCC=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000189/2 (TOMMO)
HGVS:: NC_000001.11:g.149850747dup, NW_003871055.3:g.6666160dup, NC_000001.10:g.149822314dup, XM_024451708.2:c.*4340dup, XM_047424434.1:c.*4910dup, XM_047424439.1:c.*4554dup, XM_047424442.1:c.*4160dup, NR_036461.1:n.28dup

Select item 14630142843.

rs1463014284 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:149850637 (GRCh38)
1:149822204 (GRCh37)
Canonical SPDI:: NC_000001.11:149850636:A:T
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,genic_downstream_transcript_variant,non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00008/1 (ALFA)
T=0.00002/1 (GnomAD)
T=0.00004/2 (GnomAD_exomes)
HGVS:: NC_000001.11:g.149850637A>T, NW_003871055.3:g.6666050A>T, NC_000001.10:g.149822204A>T, XM_024451708.2:c.*4449T>A, XM_047424434.1:c.*5019T>A, XM_047424439.1:c.*4663T>A, XM_047424442.1:c.*4269T>A, NR_036461.1:n.137T>A

Select item 14568426494.

rs1456842649 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:149850699 (GRCh38)
1:149822266 (GRCh37)
Canonical SPDI:: NC_000001.11:149850698:T:C
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.149850699T>C, NW_003871055.3:g.6666112T>C, NC_000001.10:g.149822266T>C, XM_024451708.2:c.*4387A>G, XM_047424434.1:c.*4957A>G, XM_047424439.1:c.*4601A>G, XM_047424442.1:c.*4207A>G, NR_036461.1:n.75A>G

Select item 14545206165.

rs1454520616 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:149850667 (GRCh38)
1:149822234 (GRCh37)
Canonical SPDI:: NC_000001.11:149850666:T:C
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.149850667T>C, NW_003871055.3:g.6666080T>C, NC_000001.10:g.149822234T>C, XM_024451708.2:c.*4419A>G, XM_047424434.1:c.*4989A>G, XM_047424439.1:c.*4633A>G, XM_047424442.1:c.*4239A>G, NR_036461.1:n.107A>G

Select item 14545056556.

rs1454505655 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:149851710 (GRCh38)
1:-1 (GRCh37)
Canonical SPDI:: NC_000001.11:149851709:G:A
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0.07343/871 (ALFA)
HGVS:: NC_000001.11:g.149851710G>A, NW_003871055.3:g.6667123G>A, XM_024451708.2:c.*3376C>T, XM_047424434.1:c.*3946C>T, XM_047424439.1:c.*3590C>T, XM_047424442.1:c.*3196C>T

Select item 14327832837.

rs1432783283 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:149850880 (GRCh38)
1:149822447 (GRCh37)
Canonical SPDI:: NC_000001.11:149850879:G:A
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: 2KB_upstream_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.149850880G>A, NW_003871055.3:g.6666293G>A, NC_000001.10:g.149822447G>A, XM_024451708.2:c.*4206C>T, XM_047424434.1:c.*4776C>T, XM_047424439.1:c.*4420C>T, XM_047424442.1:c.*4026C>T

Select item 14198443618.

rs1419844361 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 1:149850715 (GRCh38)
1:149822282 (GRCh37)
Canonical SPDI:: NC_000001.11:149850714:G:A,NC_000001.11:149850714:G:C
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.00004/2 (GnomAD_exomes)
HGVS:: NC_000001.11:g.149850715G>A, NC_000001.11:g.149850715G>C, NW_003871055.3:g.6666128G>A, NW_003871055.3:g.6666128G>C, NC_000001.10:g.149822282G>A, NC_000001.10:g.149822282G>C, XM_024451708.2:c.*4371C>T, XM_024451708.2:c.*4371C>G, XM_047424434.1:c.*4941C>T, XM_047424434.1:c.*4941C>G, XM_047424439.1:c.*4585C>T, XM_047424439.1:c.*4585C>G, XM_047424442.1:c.*4191C>T, XM_047424442.1:c.*4191C>G, NR_036461.1:n.59C>T, NR_036461.1:n.59C>G

Select item 14084894719.

rs1408489471 [Homo sapiens]

Variant type:: DELINS
Alleles:: CGGGGCGG>- [Show Flanks]
Chromosome:: 1:149851716 (GRCh38)
1:149823278 (GRCh37)
Canonical SPDI:: NC_000001.11:149851713:GGCGGGGCGG:GG
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: 500B_downstream_variant,genic_downstream_transcript_variant,downstream_transcript_variant,3_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000001.11:g.149851716_149851723del, NW_003871055.3:g.6667129_6667136del, NC_000001.10:g.149823278_149823285del, XM_024451708.2:c.*3365_*3372del, XM_047424434.1:c.*3935_*3942del, XM_047424439.1:c.*3579_*3586del, XM_047424442.1:c.*3185_*3192del

Select item 140665799410.

rs1406657994 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:149850695 (GRCh38)
1:149822262 (GRCh37)
Canonical SPDI:: NC_000001.11:149850694:C:G
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,3_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.149850695C>G, NW_003871055.3:g.6666108C>G, NC_000001.10:g.149822262C>G, XM_024451708.2:c.*4391G>C, XM_047424434.1:c.*4961G>C, XM_047424439.1:c.*4605G>C, XM_047424442.1:c.*4211G>C, NR_036461.1:n.79G>C

Select item 138325603611.

rs1383256036 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:149850848 (GRCh38)
1:149822415 (GRCh37)
Canonical SPDI:: NC_000001.11:149850847:T:C
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.149850848T>C, NW_003871055.3:g.6666261T>C, NC_000001.10:g.149822415T>C, XM_024451708.2:c.*4238A>G, XM_047424434.1:c.*4808A>G, XM_047424439.1:c.*4452A>G, XM_047424442.1:c.*4058A>G

Select item 138291128012.

rs1382911280 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:149850957 (GRCh38)
1:149822524 (GRCh37)
Canonical SPDI:: NC_000001.11:149850956:G:T
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00008/1 (ALFA)
T=0.016/83 (TOMMO)
T=0.045/18 (KOREAN)
HGVS:: NC_000001.11:g.149850957G>T, NW_003871055.3:g.6666370G>T, NC_000001.10:g.149822524G>T, XM_024451708.2:c.*4129C>A, XM_047424434.1:c.*4699C>A, XM_047424439.1:c.*4343C>A, XM_047424442.1:c.*3949C>A

Select item 137823083813.

rs1378230838 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:149850658 (GRCh38)
1:149822225 (GRCh37)
Canonical SPDI:: NC_000001.11:149850657:G:C
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00008/1 (ALFA)
C=0.00006/2 (GnomAD)
HGVS:: NC_000001.11:g.149850658G>C, NW_003871055.3:g.6666071G>C, NC_000001.10:g.149822225G>C, XM_024451708.2:c.*4428C>G, XM_047424434.1:c.*4998C>G, XM_047424439.1:c.*4642C>G, XM_047424442.1:c.*4248C>G, NR_036461.1:n.116C>G

Select item 136210562014.

rs1362105620 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 1:149850706 (GRCh38)
1:149822273 (GRCh37)
Canonical SPDI:: NC_000001.11:149850705:T:C,NC_000001.11:149850705:T:G
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant,3_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00008/1 (ALFA)
G=0.00005/1 (TOMMO)
HGVS:: NC_000001.11:g.149850706T>C, NC_000001.11:g.149850706T>G, NW_003871055.3:g.6666119T>C, NW_003871055.3:g.6666119T>G, NC_000001.10:g.149822273T>C, NC_000001.10:g.149822273T>G, XM_024451708.2:c.*4380A>G, XM_024451708.2:c.*4380A>C, XM_047424434.1:c.*4950A>G, XM_047424434.1:c.*4950A>C, XM_047424439.1:c.*4594A>G, XM_047424439.1:c.*4594A>C, XM_047424442.1:c.*4200A>G, XM_047424442.1:c.*4200A>C, NR_036461.1:n.68A>G, NR_036461.1:n.68A>C

Select item 134945548915.

rs1349455489 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:149851715 (GRCh38)
1:149823277 (GRCh37)
Canonical SPDI:: NC_000001.11:149851714:G:A
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: 3_prime_UTR_variant,downstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.00573/68 (ALFA)
HGVS:: NC_000001.11:g.149851715G>A, NW_003871055.3:g.6667128G>A, NC_000001.10:g.149823277G>A, XM_024451708.2:c.*3371C>T, XM_047424434.1:c.*3941C>T, XM_047424439.1:c.*3585C>T, XM_047424442.1:c.*3191C>T

Select item 132644531016.

rs1326445310 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:149850650 (GRCh38)
1:149822217 (GRCh37)
Canonical SPDI:: NC_000001.11:149850649:C:G,NC_000001.11:149850649:C:T
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: upstream_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00002/1 (GnomAD_exomes)
G=0.00003/1 (GnomAD)
T=0.00004/1 (TOMMO)
HGVS:: NC_000001.11:g.149850650C>G, NC_000001.11:g.149850650C>T, NW_003871055.3:g.6666063C>G, NW_003871055.3:g.6666063C>T, NC_000001.10:g.149822217C>G, NC_000001.10:g.149822217C>T, XM_024451708.2:c.*4436G>C, XM_024451708.2:c.*4436G>A, XM_047424434.1:c.*5006G>C, XM_047424434.1:c.*5006G>A, XM_047424439.1:c.*4650G>C, XM_047424439.1:c.*4650G>A, XM_047424442.1:c.*4256G>C, XM_047424442.1:c.*4256G>A, NR_036461.1:n.124G>C, NR_036461.1:n.124G>A

Select item 132516879017.

rs1325168790 has merged into rs1166121111 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACGGGACGGG>-,ACGGG [Show Flanks]
Chromosome:: 1:149851700 (GRCh38)
1:149823296 (GRCh37)
Canonical SPDI:: NC_000001.11:149851673:GACGGGACGGGACGGGACGGGACGGGACGGGACGGG:GACGGGACGGGACGGGACGGGACGGG,NC_000001.11:149851673:GACGGGACGGGACGGGACGGGACGGGACGGGACGGG:GACGGGACGGGACGGGACGGGACGGGACGGG
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant,upstream_transcript_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by cluster
HGVS:: NC_000001.11:g.149851675ACGGG[5], NC_000001.11:g.149851675ACGGG[6], NW_003871055.3:g.6667088ACGGG[5], NW_003871055.3:g.6667088ACGGG[6], NC_000001.10:g.149823271_149823272insACGG, NC_000001.10:g.149823267_149823272del, NC_000001.10:g.149823272del, XM_024451708.2:c.*3378CCGTC[5], XM_024451708.2:c.*3378CCGTC[6], XM_047424434.1:c.*3948CCGTC[5], XM_047424434.1:c.*3948CCGTC[6], XM_047424439.1:c.*3592CCGTC[5], XM_047424439.1:c.*3592CCGTC[6], XM_047424442.1:c.*3198CCGTC[5], XM_047424442.1:c.*3198CCGTC[6]

Select item 132429314318.

rs1324293143 [Homo sapiens]

Variant type:: DEL
Alleles:: ACGGGA>- [Show Flanks]
Chromosome:: 1:149851695 (GRCh38)
1:149823262 (GRCh37)
Canonical SPDI:: NC_000001.11:149851694:ACGGGA:
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: 500B_downstream_variant,2KB_upstream_variant,genic_downstream_transcript_variant,upstream_transcript_variant,3_prime_UTR_variant,downstream_transcript_variant
HGVS:: NC_000001.11:g.149851695_149851700del, NW_003871055.3:g.6667108_6667113del, NC_000001.10:g.149823262_149823267del, XM_024451708.2:c.*3386_*3391del, XM_047424434.1:c.*3956_*3961del, XM_047424439.1:c.*3600_*3605del, XM_047424442.1:c.*3206_*3211del

Select item 132067448619.

rs1320674486 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:149850829 (GRCh38)
1:149822396 (GRCh37)
Canonical SPDI:: NC_000001.11:149850828:G:A
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.149850829G>A, NW_003871055.3:g.6666242G>A, NC_000001.10:g.149822396G>A, XM_024451708.2:c.*4257C>T, XM_047424434.1:c.*4827C>T, XM_047424439.1:c.*4471C>T, XM_047424442.1:c.*4077C>T

Select item 131979560620.

rs1319795606 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:149850698 (GRCh38)
1:149822265 (GRCh37)
Canonical SPDI:: NC_000001.11:149850697:C:T
Gene:: H3C15 (Varview), H2BC20P (Varview), H4C15 (Varview), H2AC19 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.149850698C>T, NW_003871055.3:g.6666111C>T, NC_000001.10:g.149822265C>T, XM_024451708.2:c.*4388G>A, XM_047424434.1:c.*4958G>A, XM_047424439.1:c.*4602G>A, XM_047424442.1:c.*4208G>A, NR_036461.1:n.76G>A

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