Links from Gene
Items: 1 to 20 of 2070
1.
rs1491089307 has merged into rs35004947 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTTTTTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 11:64231350
(GRCh38)
11:63998822
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- DNAJC4 (Varview), LOC124902687 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTT=0./0
(
ALFA)
-=0.0618/238
(ALSPAC)
-=0.072/267
(TWINSUK)
T=0.4688/2348
(1000Genomes)
- HGVS:
NC_000011.10:g.64231350_64231360del, NC_000011.10:g.64231351_64231360del, NC_000011.10:g.64231352_64231360del, NC_000011.10:g.64231354_64231360del, NC_000011.10:g.64231355_64231360del, NC_000011.10:g.64231356_64231360del, NC_000011.10:g.64231358_64231360del, NC_000011.10:g.64231359_64231360del, NC_000011.10:g.64231360del, NC_000011.10:g.64231360dup, NC_000011.10:g.64231359_64231360dup, NC_000011.10:g.64231358_64231360dup, NC_000011.10:g.64231357_64231360dup, NC_000011.10:g.64231356_64231360dup, NC_000011.10:g.64231354_64231360dup, NC_000011.10:g.64231351_64231360dup, NC_000011.9:g.63998822_63998832del, NC_000011.9:g.63998823_63998832del, NC_000011.9:g.63998824_63998832del, NC_000011.9:g.63998826_63998832del, NC_000011.9:g.63998827_63998832del, NC_000011.9:g.63998828_63998832del, NC_000011.9:g.63998830_63998832del, NC_000011.9:g.63998831_63998832del, NC_000011.9:g.63998832del, NC_000011.9:g.63998832dup, NC_000011.9:g.63998831_63998832dup, NC_000011.9:g.63998830_63998832dup, NC_000011.9:g.63998829_63998832dup, NC_000011.9:g.63998828_63998832dup, NC_000011.9:g.63998826_63998832dup, NC_000011.9:g.63998823_63998832dup, NG_029823.1:g.1767_1777del, NG_029823.1:g.1768_1777del, NG_029823.1:g.1769_1777del, NG_029823.1:g.1771_1777del, NG_029823.1:g.1772_1777del, NG_029823.1:g.1773_1777del, NG_029823.1:g.1775_1777del, NG_029823.1:g.1776_1777del, NG_029823.1:g.1777del, NG_029823.1:g.1777dup, NG_029823.1:g.1776_1777dup, NG_029823.1:g.1775_1777dup, NG_029823.1:g.1774_1777dup, NG_029823.1:g.1773_1777dup, NG_029823.1:g.1771_1777dup, NG_029823.1:g.1768_1777dup, XR_007062713.1:n.18_28del, XR_007062713.1:n.19_28del, XR_007062713.1:n.20_28del, XR_007062713.1:n.22_28del, XR_007062713.1:n.23_28del, XR_007062713.1:n.24_28del, XR_007062713.1:n.26_28del, XR_007062713.1:n.27_28del, XR_007062713.1:n.28del, XR_007062713.1:n.28dup, XR_007062713.1:n.27_28dup, XR_007062713.1:n.26_28dup, XR_007062713.1:n.25_28dup, XR_007062713.1:n.24_28dup, XR_007062713.1:n.22_28dup, XR_007062713.1:n.19_28dup
2.
rs1490779009 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 11:64232947
(GRCh38)
11:64000419
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64232946:C:T
- Gene:
- DNAJC4 (Varview), VEGFB (Varview), LOC124902687 (Varview)
- Functional Consequence:
- intron_variant,2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
3.
rs1490506825 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 11:64234151
(GRCh38)
11:64001623
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64234150:C:T
- Gene:
- DNAJC4 (Varview), VEGFB (Varview)
- Functional Consequence:
- coding_sequence_variant,2KB_upstream_variant,3_prime_UTR_variant,synonymous_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
4.
rs1490036475 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A,T
[Show Flanks]
- Chromosome:
- 11:64234739
(GRCh38)
11:64002211
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64234738:C:A,NC_000011.10:64234738:C:T
- Gene:
- DNAJC4 (Varview), VEGFB (Varview)
- Functional Consequence:
- 5_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
- HGVS:
NC_000011.10:g.64234739C>A, NC_000011.10:g.64234739C>T, NC_000011.9:g.64002211C>A, NC_000011.9:g.64002211C>T, NG_029823.1:g.5156C>A, NG_029823.1:g.5156C>T, NM_003377.5:c.-95C>A, NM_003377.5:c.-95C>T, NM_003377.4:c.-95C>A, NM_003377.4:c.-95C>T, NM_001243733.2:c.-95C>A, NM_001243733.2:c.-95C>T, NM_001243733.1:c.-95C>A, NM_001243733.1:c.-95C>T
5.
rs1490007860 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>A
[Show Flanks]
- Chromosome:
- 11:64234263
(GRCh38)
11:64001735
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64234262:C:A
- Gene:
- DNAJC4 (Varview), VEGFB (Varview)
- Functional Consequence:
- 3_prime_UTR_variant,2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0.000071/1
(
ALFA)
A=0.000011/3
(TOPMED)
A=0.000014/2
(GnomAD)
- HGVS:
6.
rs1489953772 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,C
[Show Flanks]
- Chromosome:
- 11:64231965
(GRCh38)
11:63999437
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64231964:G:A,NC_000011.10:64231964:G:C
- Gene:
- DNAJC4 (Varview), LOC124902687 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,splice_donor_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
A=0.000004/1
(GnomAD_exomes)
A=0.000007/1
(GnomAD)
- HGVS:
7.
rs1489455729 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 11:64230695
(GRCh38)
11:63998167
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64230694:T:G
- Gene:
- DNAJC4 (Varview), NUDT22 (Varview), LOC124902687 (Varview)
- Functional Consequence:
- 5_prime_UTR_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency
- MAF:
G=0.000009/1
(GnomAD_exomes)
- HGVS:
9.
rs1489166500 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 11:64231147
(GRCh38)
11:63998619
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64231146:G:A
- Gene:
- DNAJC4 (Varview), LOC124902687 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000014/2
(GnomAD)
- HGVS:
10.
rs1488506826 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- A>-
[Show Flanks]
- Chromosome:
- 11:64230280
(GRCh38)
11:63997752
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64230279:AAA:AA
- Gene:
- DNAJC4 (Varview), NUDT22 (Varview), LOC124902687 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AA=0./0
(
ALFA)
-=0.000007/1
(GnomAD)
-=0.000008/2
(TOPMED)
- HGVS:
11.
rs1488396403 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- CCC>-,CCCCCC
[Show Flanks]
- Chromosome:
- 11:64229225
(GRCh38)
11:63996697
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64229221:CCCCCC:CCC,NC_000011.10:64229221:CCCCCC:CCCCCCCCC
- Gene:
- DNAJC4 (Varview), NUDT22 (Varview), LOC124902687 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
CCCCCCCCC=0./0
(
ALFA)
-=0.000004/1
(TOPMED)
- HGVS:
12.
rs1488260388 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 11:64233414
(GRCh38)
11:64000886
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64233413:T:C
- Gene:
- DNAJC4 (Varview), VEGFB (Varview)
- Functional Consequence:
- intron_variant,2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.000071/1
(
ALFA)
C=0.000011/3
(TOPMED)
C=0.000021/3
(GnomAD)
- HGVS:
14.
rs1487738735 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>T
[Show Flanks]
- Chromosome:
- 11:64232452
(GRCh38)
11:63999924
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64232451:G:T
- Gene:
- DNAJC4 (Varview), LOC124902687 (Varview)
- Functional Consequence:
- missense_variant,coding_sequence_variant,2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000008/2
(TOPMED)
- HGVS:
NC_000011.10:g.64232452G>T, NC_000011.9:g.63999924G>T, NG_029823.1:g.2869G>T, NM_005528.4:c.203G>T, NM_005528.3:c.203G>T, NM_001307980.1:c.203G>T, NM_001307981.1:c.203G>T, XM_047426865.1:c.203G>T, NP_005519.2:p.Gly68Val, NP_001294909.1:p.Gly68Val, NP_001294910.1:p.Gly68Val, XP_047282821.1:p.Gly68Val
15.
rs1487225044 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 11:64230415
(GRCh38)
11:63997887
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64230414:T:C
- Gene:
- DNAJC4 (Varview), NUDT22 (Varview), LOC124902687 (Varview)
- Functional Consequence:
- upstream_transcript_variant,intron_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
- Validated:
- by frequency
- MAF:
C=0.000008/1
(GnomAD_exomes)
- HGVS:
16.
rs1487148158 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>T
[Show Flanks]
- Chromosome:
- 11:64232122
(GRCh38)
11:63999594
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64232121:G:T
- Gene:
- DNAJC4 (Varview), LOC124902687 (Varview)
- Functional Consequence:
- intron_variant,2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
T=0.000007/1
(GnomAD)
- HGVS:
17.
rs1487107141 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C
[Show Flanks]
- Chromosome:
- 11:64229550
(GRCh38)
11:63997022
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64229549:A:C
- Gene:
- DNAJC4 (Varview), NUDT22 (Varview), LOC124902687 (Varview)
- Functional Consequence:
- coding_sequence_variant,non_coding_transcript_variant,2KB_upstream_variant,synonymous_variant,upstream_transcript_variant
- Validated:
- by frequency,by cluster
- MAF:
C=0.000004/1
(GnomAD_exomes)
- HGVS:
NC_000011.10:g.64229550A>C, NC_000011.9:g.63997022A>C, NM_032344.4:c.750A>C, NM_032344.3:c.750A>C, NM_001128613.3:c.651A>C, NM_001128613.2:c.651A>C, NM_001128612.3:c.750A>C, NM_001128612.2:c.750A>C, NM_001271831.2:c.651A>C, NM_001271831.1:c.651A>C, XM_047427701.1:c.843A>C, XM_047427703.1:c.750A>C, XM_047427705.1:c.651A>C, XM_047427699.1:c.864A>C, XM_047427702.1:c.864A>C, XR_007062713.1:n.691T>G, XM_047427700.1:c.843A>C, XM_047427704.1:c.771A>C, XM_047427707.1:c.750A>C
18.
rs1486933267 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,T
[Show Flanks]
- Chromosome:
- 11:64231369
(GRCh38)
11:63998841
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64231368:G:A,NC_000011.10:64231368:G:T
- Gene:
- DNAJC4 (Varview), LOC124902687 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0./0
(
ALFA)
A=0.000024/3
(GnomAD)
- HGVS:
19.
rs1486747583 has merged into rs10708923 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAA>-,A,AA,AAA,AAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 11:64230107
(GRCh38)
11:63997579
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- DNAJC4 (Varview), NUDT22 (Varview), LOC124902687 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,intron_variant,genic_downstream_transcript_variant,downstream_transcript_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAAAAA=0./0
(
ALFA)
-=0.05189/200
(ALSPAC)
-=0.375/15
(GENOME_DK)
-=0.42432/2125
(1000Genomes)
- HGVS:
NC_000011.10:g.64230107_64230111del, NC_000011.10:g.64230108_64230111del, NC_000011.10:g.64230109_64230111del, NC_000011.10:g.64230110_64230111del, NC_000011.10:g.64230111del, NC_000011.10:g.64230111dup, NC_000011.10:g.64230110_64230111dup, NC_000011.10:g.64230109_64230111dup, NC_000011.10:g.64230108_64230111dup, NC_000011.10:g.64230104_64230111dup, NC_000011.9:g.63997579_63997583del, NC_000011.9:g.63997580_63997583del, NC_000011.9:g.63997581_63997583del, NC_000011.9:g.63997582_63997583del, NC_000011.9:g.63997583del, NC_000011.9:g.63997583dup, NC_000011.9:g.63997582_63997583dup, NC_000011.9:g.63997581_63997583dup, NC_000011.9:g.63997580_63997583dup, NC_000011.9:g.63997576_63997583dup, NG_029823.1:g.524_528del, NG_029823.1:g.525_528del, NG_029823.1:g.526_528del, NG_029823.1:g.527_528del, NG_029823.1:g.528del, NG_029823.1:g.528dup, NG_029823.1:g.527_528dup, NG_029823.1:g.526_528dup, NG_029823.1:g.525_528dup, NG_029823.1:g.521_528dup
20.
rs1486650243 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 11:64234352
(GRCh38)
11:64001824
(GRCh37)
- Canonical SPDI:
- NC_000011.10:64234351:C:T
- Gene:
- DNAJC4 (Varview), VEGFB (Varview)
- Functional Consequence:
- upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS: