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Items: 1 to 20 of 2070

1.

rs1491089307 has merged into rs35004947 [Homo sapiens]
    Variant type:
    DELINS
    Alleles:
    TTTTTTTTTTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT [Show Flanks]
    Chromosome:
    11:64231350 (GRCh38)
    11:63998822 (GRCh37)
    Canonical SPDI:
    NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000011.10:64231342:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT
    Gene:
    DNAJC4 (Varview), LOC124902687 (Varview)
    Functional Consequence:
    non_coding_transcript_variant,intron_variant
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    TTTTTTT=0./0 (ALFA)
    -=0.0618/238 (ALSPAC)
    -=0.072/267 (TWINSUK)
    T=0.4688/2348 (1000Genomes)
    HGVS:
    NC_000011.10:g.64231350_64231360del, NC_000011.10:g.64231351_64231360del, NC_000011.10:g.64231352_64231360del, NC_000011.10:g.64231354_64231360del, NC_000011.10:g.64231355_64231360del, NC_000011.10:g.64231356_64231360del, NC_000011.10:g.64231358_64231360del, NC_000011.10:g.64231359_64231360del, NC_000011.10:g.64231360del, NC_000011.10:g.64231360dup, NC_000011.10:g.64231359_64231360dup, NC_000011.10:g.64231358_64231360dup, NC_000011.10:g.64231357_64231360dup, NC_000011.10:g.64231356_64231360dup, NC_000011.10:g.64231354_64231360dup, NC_000011.10:g.64231351_64231360dup, NC_000011.9:g.63998822_63998832del, NC_000011.9:g.63998823_63998832del, NC_000011.9:g.63998824_63998832del, NC_000011.9:g.63998826_63998832del, NC_000011.9:g.63998827_63998832del, NC_000011.9:g.63998828_63998832del, NC_000011.9:g.63998830_63998832del, NC_000011.9:g.63998831_63998832del, NC_000011.9:g.63998832del, NC_000011.9:g.63998832dup, NC_000011.9:g.63998831_63998832dup, NC_000011.9:g.63998830_63998832dup, NC_000011.9:g.63998829_63998832dup, NC_000011.9:g.63998828_63998832dup, NC_000011.9:g.63998826_63998832dup, NC_000011.9:g.63998823_63998832dup, NG_029823.1:g.1767_1777del, NG_029823.1:g.1768_1777del, NG_029823.1:g.1769_1777del, NG_029823.1:g.1771_1777del, NG_029823.1:g.1772_1777del, NG_029823.1:g.1773_1777del, NG_029823.1:g.1775_1777del, NG_029823.1:g.1776_1777del, NG_029823.1:g.1777del, NG_029823.1:g.1777dup, NG_029823.1:g.1776_1777dup, NG_029823.1:g.1775_1777dup, NG_029823.1:g.1774_1777dup, NG_029823.1:g.1773_1777dup, NG_029823.1:g.1771_1777dup, NG_029823.1:g.1768_1777dup, XR_007062713.1:n.18_28del, XR_007062713.1:n.19_28del, XR_007062713.1:n.20_28del, XR_007062713.1:n.22_28del, XR_007062713.1:n.23_28del, XR_007062713.1:n.24_28del, XR_007062713.1:n.26_28del, XR_007062713.1:n.27_28del, XR_007062713.1:n.28del, XR_007062713.1:n.28dup, XR_007062713.1:n.27_28dup, XR_007062713.1:n.26_28dup, XR_007062713.1:n.25_28dup, XR_007062713.1:n.24_28dup, XR_007062713.1:n.22_28dup, XR_007062713.1:n.19_28dup
    2.

    rs1490779009 [Homo sapiens]
      Variant type:
      SNV
      Alleles:
      C>T [Show Flanks]
      Chromosome:
      11:64232947 (GRCh38)
      11:64000419 (GRCh37)
      Canonical SPDI:
      NC_000011.10:64232946:C:T
      Gene:
      DNAJC4 (Varview), VEGFB (Varview), LOC124902687 (Varview)
      Functional Consequence:
      intron_variant,2KB_upstream_variant,upstream_transcript_variant
      Validated:
      by frequency,by alfa
      MAF:
      T=0./0 (ALFA)
      T=0.000004/1 (TOPMED)
      HGVS:
      3.

      rs1490506825 [Homo sapiens]
        Variant type:
        SNV
        Alleles:
        C>T [Show Flanks]
        Chromosome:
        11:64234151 (GRCh38)
        11:64001623 (GRCh37)
        Canonical SPDI:
        NC_000011.10:64234150:C:T
        Gene:
        DNAJC4 (Varview), VEGFB (Varview)
        Functional Consequence:
        coding_sequence_variant,2KB_upstream_variant,3_prime_UTR_variant,synonymous_variant,upstream_transcript_variant
        Validated:
        by frequency,by alfa,by cluster
        MAF:
        T=0./0 (ALFA)
        T=0.000004/1 (TOPMED)
        HGVS:
        4.

        rs1490036475 [Homo sapiens]
          Variant type:
          SNV
          Alleles:
          C>A,T [Show Flanks]
          Chromosome:
          11:64234739 (GRCh38)
          11:64002211 (GRCh37)
          Canonical SPDI:
          NC_000011.10:64234738:C:A,NC_000011.10:64234738:C:T
          Gene:
          DNAJC4 (Varview), VEGFB (Varview)
          Functional Consequence:
          5_prime_UTR_variant,downstream_transcript_variant,500B_downstream_variant
          Validated:
          by frequency,by alfa,by cluster
          MAF:
          T=0./0 (ALFA)
          HGVS:
          5.

          rs1490007860 [Homo sapiens]
            Variant type:
            SNV
            Alleles:
            C>A [Show Flanks]
            Chromosome:
            11:64234263 (GRCh38)
            11:64001735 (GRCh37)
            Canonical SPDI:
            NC_000011.10:64234262:C:A
            Gene:
            DNAJC4 (Varview), VEGFB (Varview)
            Functional Consequence:
            3_prime_UTR_variant,2KB_upstream_variant,upstream_transcript_variant
            Validated:
            by frequency,by alfa,by cluster
            MAF:
            A=0.000071/1 (ALFA)
            A=0.000011/3 (TOPMED)
            A=0.000014/2 (GnomAD)
            HGVS:
            6.

            rs1489953772 [Homo sapiens]
              Variant type:
              SNV
              Alleles:
              G>A,C [Show Flanks]
              Chromosome:
              11:64231965 (GRCh38)
              11:63999437 (GRCh37)
              Canonical SPDI:
              NC_000011.10:64231964:G:A,NC_000011.10:64231964:G:C
              Gene:
              DNAJC4 (Varview), LOC124902687 (Varview)
              Functional Consequence:
              2KB_upstream_variant,splice_donor_variant,upstream_transcript_variant
              Validated:
              by frequency,by alfa,by cluster
              MAF:
              C=0./0 (ALFA)
              A=0.000004/1 (GnomAD_exomes)
              A=0.000007/1 (GnomAD)
              HGVS:
              7.

              rs1489455729 [Homo sapiens]
                Variant type:
                SNV
                Alleles:
                T>G [Show Flanks]
                Chromosome:
                11:64230695 (GRCh38)
                11:63998167 (GRCh37)
                Canonical SPDI:
                NC_000011.10:64230694:T:G
                Gene:
                DNAJC4 (Varview), NUDT22 (Varview), LOC124902687 (Varview)
                Functional Consequence:
                5_prime_UTR_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
                Validated:
                by frequency
                MAF:
                G=0.000009/1 (GnomAD_exomes)
                HGVS:
                8.

                rs1489354115 [Homo sapiens]
                  Variant type:
                  SNV
                  Alleles:
                  C>A,T [Show Flanks]
                  Chromosome:
                  11:64228628 (GRCh38)
                  11:63996100 (GRCh37)
                  Canonical SPDI:
                  NC_000011.10:64228627:C:A,NC_000011.10:64228627:C:T
                  Gene:
                  DNAJC4 (Varview), NUDT22 (Varview)
                  Functional Consequence:
                  intron_variant,2KB_upstream_variant,upstream_transcript_variant
                  Validated:
                  by frequency,by alfa,by cluster
                  MAF:
                  T=0.00055/9 (ALFA)
                  HGVS:
                  9.

                  rs1489166500 [Homo sapiens]
                    Variant type:
                    SNV
                    Alleles:
                    G>A [Show Flanks]
                    Chromosome:
                    11:64231147 (GRCh38)
                    11:63998619 (GRCh37)
                    Canonical SPDI:
                    NC_000011.10:64231146:G:A
                    Gene:
                    DNAJC4 (Varview), LOC124902687 (Varview)
                    Functional Consequence:
                    intron_variant
                    Validated:
                    by frequency,by alfa
                    MAF:
                    A=0./0 (ALFA)
                    A=0.000014/2 (GnomAD)
                    HGVS:
                    10.

                    rs1488506826 [Homo sapiens]
                      Variant type:
                      DELINS
                      Alleles:
                      A>- [Show Flanks]
                      Chromosome:
                      11:64230280 (GRCh38)
                      11:63997752 (GRCh37)
                      Canonical SPDI:
                      NC_000011.10:64230279:AAA:AA
                      Gene:
                      DNAJC4 (Varview), NUDT22 (Varview), LOC124902687 (Varview)
                      Functional Consequence:
                      upstream_transcript_variant,intron_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
                      Validated:
                      by frequency,by alfa,by cluster
                      MAF:
                      AA=0./0 (ALFA)
                      -=0.000007/1 (GnomAD)
                      -=0.000008/2 (TOPMED)
                      HGVS:
                      11.

                      rs1488396403 [Homo sapiens]
                        Variant type:
                        DELINS
                        Alleles:
                        CCC>-,CCCCCC [Show Flanks]
                        Chromosome:
                        11:64229225 (GRCh38)
                        11:63996697 (GRCh37)
                        Canonical SPDI:
                        NC_000011.10:64229221:CCCCCC:CCC,NC_000011.10:64229221:CCCCCC:CCCCCCCCC
                        Gene:
                        DNAJC4 (Varview), NUDT22 (Varview), LOC124902687 (Varview)
                        Functional Consequence:
                        non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
                        Validated:
                        by frequency,by alfa
                        MAF:
                        CCCCCCCCC=0./0 (ALFA)
                        -=0.000004/1 (TOPMED)
                        HGVS:
                        12.

                        rs1488260388 [Homo sapiens]
                          Variant type:
                          SNV
                          Alleles:
                          T>C [Show Flanks]
                          Chromosome:
                          11:64233414 (GRCh38)
                          11:64000886 (GRCh37)
                          Canonical SPDI:
                          NC_000011.10:64233413:T:C
                          Gene:
                          DNAJC4 (Varview), VEGFB (Varview)
                          Functional Consequence:
                          intron_variant,2KB_upstream_variant,upstream_transcript_variant
                          Validated:
                          by frequency,by alfa,by cluster
                          MAF:
                          C=0.000071/1 (ALFA)
                          C=0.000011/3 (TOPMED)
                          C=0.000021/3 (GnomAD)
                          HGVS:
                          13.

                          rs1488130813 [Homo sapiens]
                            Variant type:
                            SNV
                            Alleles:
                            A>C,G [Show Flanks]
                            Chromosome:
                            11:64232650 (GRCh38)
                            11:64000122 (GRCh37)
                            Canonical SPDI:
                            NC_000011.10:64232649:A:C,NC_000011.10:64232649:A:G
                            Gene:
                            DNAJC4 (Varview), VEGFB (Varview), LOC124902687 (Varview)
                            Functional Consequence:
                            intron_variant,2KB_upstream_variant,upstream_transcript_variant
                            Validated:
                            by cluster
                            HGVS:
                            14.

                            rs1487738735 [Homo sapiens]
                              Variant type:
                              SNV
                              Alleles:
                              G>T [Show Flanks]
                              Chromosome:
                              11:64232452 (GRCh38)
                              11:63999924 (GRCh37)
                              Canonical SPDI:
                              NC_000011.10:64232451:G:T
                              Gene:
                              DNAJC4 (Varview), LOC124902687 (Varview)
                              Functional Consequence:
                              missense_variant,coding_sequence_variant,2KB_upstream_variant,upstream_transcript_variant
                              Validated:
                              by frequency,by alfa
                              MAF:
                              T=0./0 (ALFA)
                              T=0.000008/2 (TOPMED)
                              HGVS:
                              15.

                              rs1487225044 [Homo sapiens]
                                Variant type:
                                SNV
                                Alleles:
                                T>C [Show Flanks]
                                Chromosome:
                                11:64230415 (GRCh38)
                                11:63997887 (GRCh37)
                                Canonical SPDI:
                                NC_000011.10:64230414:T:C
                                Gene:
                                DNAJC4 (Varview), NUDT22 (Varview), LOC124902687 (Varview)
                                Functional Consequence:
                                upstream_transcript_variant,intron_variant,2KB_upstream_variant,downstream_transcript_variant,500B_downstream_variant
                                Validated:
                                by frequency
                                MAF:
                                C=0.000008/1 (GnomAD_exomes)
                                HGVS:
                                16.

                                rs1487148158 [Homo sapiens]
                                  Variant type:
                                  SNV
                                  Alleles:
                                  G>T [Show Flanks]
                                  Chromosome:
                                  11:64232122 (GRCh38)
                                  11:63999594 (GRCh37)
                                  Canonical SPDI:
                                  NC_000011.10:64232121:G:T
                                  Gene:
                                  DNAJC4 (Varview), LOC124902687 (Varview)
                                  Functional Consequence:
                                  intron_variant,2KB_upstream_variant,upstream_transcript_variant
                                  Validated:
                                  by frequency,by alfa,by cluster
                                  MAF:
                                  T=0./0 (ALFA)
                                  T=0.000004/1 (TOPMED)
                                  T=0.000007/1 (GnomAD)
                                  HGVS:
                                  17.

                                  rs1487107141 [Homo sapiens]
                                    Variant type:
                                    SNV
                                    Alleles:
                                    A>C [Show Flanks]
                                    Chromosome:
                                    11:64229550 (GRCh38)
                                    11:63997022 (GRCh37)
                                    Canonical SPDI:
                                    NC_000011.10:64229549:A:C
                                    Gene:
                                    DNAJC4 (Varview), NUDT22 (Varview), LOC124902687 (Varview)
                                    Functional Consequence:
                                    coding_sequence_variant,non_coding_transcript_variant,2KB_upstream_variant,synonymous_variant,upstream_transcript_variant
                                    Validated:
                                    by frequency,by cluster
                                    MAF:
                                    C=0.000004/1 (GnomAD_exomes)
                                    HGVS:
                                    18.

                                    rs1486933267 [Homo sapiens]
                                      Variant type:
                                      SNV
                                      Alleles:
                                      G>A,T [Show Flanks]
                                      Chromosome:
                                      11:64231369 (GRCh38)
                                      11:63998841 (GRCh37)
                                      Canonical SPDI:
                                      NC_000011.10:64231368:G:A,NC_000011.10:64231368:G:T
                                      Gene:
                                      DNAJC4 (Varview), LOC124902687 (Varview)
                                      Functional Consequence:
                                      non_coding_transcript_variant,intron_variant
                                      Validated:
                                      by frequency,by alfa
                                      MAF:
                                      A=0./0 (ALFA)
                                      A=0.000024/3 (GnomAD)
                                      HGVS:
                                      19.

                                      rs1486747583 has merged into rs10708923 [Homo sapiens]
                                        Variant type:
                                        DELINS
                                        Alleles:
                                        AAAAA>-,A,AA,AAA,AAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAAAAA [Show Flanks]
                                        Chromosome:
                                        11:64230107 (GRCh38)
                                        11:63997579 (GRCh37)
                                        Canonical SPDI:
                                        NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000011.10:64230094:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA
                                        Gene:
                                        DNAJC4 (Varview), NUDT22 (Varview), LOC124902687 (Varview)
                                        Functional Consequence:
                                        2KB_upstream_variant,intron_variant,genic_downstream_transcript_variant,downstream_transcript_variant,upstream_transcript_variant
                                        Validated:
                                        by frequency,by alfa,by cluster
                                        MAF:
                                        AAAAAAAAAAAAA=0./0 (ALFA)
                                        -=0.05189/200 (ALSPAC)
                                        -=0.375/15 (GENOME_DK)
                                        -=0.42432/2125 (1000Genomes)
                                        HGVS:
                                        NC_000011.10:g.64230107_64230111del, NC_000011.10:g.64230108_64230111del, NC_000011.10:g.64230109_64230111del, NC_000011.10:g.64230110_64230111del, NC_000011.10:g.64230111del, NC_000011.10:g.64230111dup, NC_000011.10:g.64230110_64230111dup, NC_000011.10:g.64230109_64230111dup, NC_000011.10:g.64230108_64230111dup, NC_000011.10:g.64230104_64230111dup, NC_000011.9:g.63997579_63997583del, NC_000011.9:g.63997580_63997583del, NC_000011.9:g.63997581_63997583del, NC_000011.9:g.63997582_63997583del, NC_000011.9:g.63997583del, NC_000011.9:g.63997583dup, NC_000011.9:g.63997582_63997583dup, NC_000011.9:g.63997581_63997583dup, NC_000011.9:g.63997580_63997583dup, NC_000011.9:g.63997576_63997583dup, NG_029823.1:g.524_528del, NG_029823.1:g.525_528del, NG_029823.1:g.526_528del, NG_029823.1:g.527_528del, NG_029823.1:g.528del, NG_029823.1:g.528dup, NG_029823.1:g.527_528dup, NG_029823.1:g.526_528dup, NG_029823.1:g.525_528dup, NG_029823.1:g.521_528dup
                                        20.

                                        rs1486650243 [Homo sapiens]
                                          Variant type:
                                          SNV
                                          Alleles:
                                          C>T [Show Flanks]
                                          Chromosome:
                                          11:64234352 (GRCh38)
                                          11:64001824 (GRCh37)
                                          Canonical SPDI:
                                          NC_000011.10:64234351:C:T
                                          Gene:
                                          DNAJC4 (Varview), VEGFB (Varview)
                                          Functional Consequence:
                                          upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant
                                          Validated:
                                          by frequency,by alfa
                                          MAF:
                                          T=0./0 (ALFA)
                                          T=0.000004/1 (TOPMED)
                                          HGVS:

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