SNP Links for Gene (Select 3337) - SNP

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Links from Gene

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Select item 14909881551.

rs1490988155 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 19:14517515 (GRCh38)
19:14628327 (GRCh37)
Canonical SPDI:: NC_000019.10:14517514:G:A,NC_000019.10:14517514:G:C,NC_000019.10:14517514:G:T
Gene:: DNAJB1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14517515G>A, NC_000019.10:g.14517515G>C, NC_000019.10:g.14517515G>T, NC_000019.9:g.14628327G>A, NC_000019.9:g.14628327G>C, NC_000019.9:g.14628327G>T

Select item 14906441212.

rs1490644121 [Homo sapiens]

Variant type:: DEL
Alleles:: AGACCCTGT>- [Show Flanks]
Chromosome:: 19:14524509 (GRCh38)
19:14635321 (GRCh37)
Canonical SPDI:: NC_000019.10:14524508:AGACCCTGT:
Gene:: DNAJB1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.14524509_14524517del, NC_000019.9:g.14635321_14635329del

Select item 14905875603.

rs1490587560 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 19:14523498 (GRCh38)
19:14634310 (GRCh37)
Canonical SPDI:: NC_000019.10:14523497:G:C
Gene:: DNAJB1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.14523498G>C, NC_000019.9:g.14634310G>C

Select item 14905405724.

rs1490540572 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 19:14514431 (GRCh38)
19:14625243 (GRCh37)
Canonical SPDI:: NC_000019.10:14514430:G:A,NC_000019.10:14514430:G:C
Gene:: DNAJB1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.14514431G>A, NC_000019.10:g.14514431G>C, NC_000019.9:g.14625243G>A, NC_000019.9:g.14625243G>C

Select item 14903842645.

rs1490384264 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:14530356 (GRCh38)
19:14641168 (GRCh37)
Canonical SPDI:: NC_000019.10:14530355:C:T
Gene:: DNAJB1 (Varview), TECR (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000147/39 (TOPMED)
T=0.000299/42 (GnomAD)
HGVS:: NC_000019.10:g.14530356C>T, NC_000019.9:g.14641168C>T, NG_028336.1:g.5790C>T

Select item 14902215526.

rs1490221552 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:14530796 (GRCh38)
19:14641608 (GRCh37)
Canonical SPDI:: NC_000019.10:14530795:T:G
Gene:: DNAJB1 (Varview), TECR (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14530796T>G, NC_000019.9:g.14641608T>G, NG_028336.1:g.6230T>G

Select item 14901954447.

rs1490195444 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:14518226 (GRCh38)
19:14629038 (GRCh37)
Canonical SPDI:: NC_000019.10:14518225:C:T
Gene:: DNAJB1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.14518226C>T, NC_000019.9:g.14629038C>T, NM_006145.3:c.124G>A, NM_006145.2:c.124G>A, NM_006145.1:c.124G>A, NP_006136.1:p.Glu42Lys

Select item 14900052208.

rs1490005220 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 19:14517971 (GRCh38)
19:14628783 (GRCh37)
Canonical SPDI:: NC_000019.10:14517970:CC:C
Gene:: DNAJB1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CC=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.14517972del, NC_000019.9:g.14628784del

Select item 14897445289.

rs1489744528 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:14523922 (GRCh38)
19:14634734 (GRCh37)
Canonical SPDI:: NC_000019.10:14523921:C:G
Gene:: DNAJB1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.14523922C>G, NC_000019.9:g.14634734C>G

Select item 148965691710.

rs1489656917 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 19:14515147 (GRCh38)
19:14625959 (GRCh37)
Canonical SPDI:: NC_000019.10:14515146:T:A,NC_000019.10:14515146:T:C
Gene:: DNAJB1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.14515147T>A, NC_000019.10:g.14515147T>C, NC_000019.9:g.14625959T>A, NC_000019.9:g.14625959T>C, XM_011527956.4:c.*793A>T, XM_011527956.4:c.*793A>G, XM_011527956.3:c.*793A>T, XM_011527956.3:c.*793A>G, XM_011527956.2:c.*793A>T, XM_011527956.2:c.*793A>G, XM_011527956.1:c.*793A>T, XM_011527956.1:c.*793A>G, NM_006145.3:c.*793A>T, NM_006145.3:c.*793A>G, NM_006145.2:c.*793A>T, NM_006145.2:c.*793A>G, NM_006145.1:c.*793A>T, NM_006145.1:c.*793A>G, XM_006722733.3:c.*793A>T, XM_006722733.3:c.*793A>G, XM_006722733.2:c.*793A>T, XM_006722733.2:c.*793A>G, XM_006722733.1:c.*793A>T, XM_006722733.1:c.*793A>G, NM_001300914.2:c.*793A>T, NM_001300914.2:c.*793A>G, NM_001300914.1:c.*793A>T, NM_001300914.1:c.*793A>G, NM_001313964.2:c.*793A>T, NM_001313964.2:c.*793A>G, NM_001313964.1:c.*793A>T, NM_001313964.1:c.*793A>G, XM_047438745.1:c.*793A>T, XM_047438745.1:c.*793A>G, XM_047438746.1:c.*793A>T, XM_047438746.1:c.*793A>G

Select item 148965589111.

rs1489655891 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:14527969 (GRCh38)
19:14638781 (GRCh37)
Canonical SPDI:: NC_000019.10:14527968:C:A
Gene:: DNAJB1 (Varview), TECR (Varview), MIR639 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.14527969C>A, NC_000019.9:g.14638781C>A, NG_028336.1:g.3403C>A

Select item 148945050212.

rs1489450502 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 19:14525051 (GRCh38)
19:14635863 (GRCh37)
Canonical SPDI:: NC_000019.10:14525050:T:
Gene:: DNAJB1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14525051del, NC_000019.9:g.14635863del, NG_028336.1:g.485del

Select item 148939984413.

rs1489399844 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 19:14523956 (GRCh38)
19:14634768 (GRCh37)
Canonical SPDI:: NC_000019.10:14523955:C:G
Gene:: DNAJB1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.14523956C>G, NC_000019.9:g.14634768C>G

Select item 148932812114.

rs1489328121 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:14515803 (GRCh38)
19:14626615 (GRCh37)
Canonical SPDI:: NC_000019.10:14515802:T:C
Gene:: DNAJB1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14515803T>C, NC_000019.9:g.14626615T>C, XM_011527956.4:c.*137A>G, XM_011527956.3:c.*137A>G, XM_011527956.2:c.*137A>G, XM_011527956.1:c.*137A>G, NM_006145.3:c.*137A>G, NM_006145.2:c.*137A>G, NM_006145.1:c.*137A>G, XM_006722733.3:c.*137A>G, XM_006722733.2:c.*137A>G, XM_006722733.1:c.*137A>G, NM_001300914.2:c.*137A>G, NM_001300914.1:c.*137A>G, NM_001313964.2:c.*137A>G, NM_001313964.1:c.*137A>G, XM_047438745.1:c.*137A>G, XM_047438746.1:c.*137A>G

Select item 148923020815.

rs1489230208 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 19:14528590 (GRCh38)
19:14639402 (GRCh37)
Canonical SPDI:: NC_000019.10:14528589:G:
Gene:: DNAJB1 (Varview), TECR (Varview), MIR639 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000019/5 (TOPMED)
HGVS:: NC_000019.10:g.14528590del, NC_000019.9:g.14639402del, NG_028336.1:g.4024del

Select item 148918017616.

rs1489180176 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:14527684 (GRCh38)
19:14638496 (GRCh37)
Canonical SPDI:: NC_000019.10:14527683:C:T
Gene:: DNAJB1 (Varview), TECR (Varview), MIR639 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14527684C>T, NC_000019.9:g.14638496C>T, NG_028336.1:g.3118C>T

Select item 148908507217.

rs1489085072 [Homo sapiens]

Variant type:: SNV:
Alleles:: A>C
Chromosome:: no mapping
Canonical SPDI:

Select item 148907469918.

rs1489074699 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:14516248 (GRCh38)
19:14627060 (GRCh37)
Canonical SPDI:: NC_000019.10:14516247:G:A
Gene:: DNAJB1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14516248G>A, NC_000019.9:g.14627060G>A

Select item 148890862119.

rs1488908621 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:14529014 (GRCh38)
19:14639826 (GRCh37)
Canonical SPDI:: NC_000019.10:14529013:G:A
Gene:: DNAJB1 (Varview), TECR (Varview), MIR639 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.14529014G>A, NC_000019.9:g.14639826G>A, NG_028336.1:g.4448G>A

Select item 148875387620.

rs1488753876 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:14530955 (GRCh38)
19:14641767 (GRCh37)
Canonical SPDI:: NC_000019.10:14530954:C:T
Gene:: DNAJB1 (Varview), TECR (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000026/7 (TOPMED)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000019.10:g.14530955C>T, NC_000019.9:g.14641767C>T, NG_028336.1:g.6389C>T

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