SNP Links for Gene (Select 3205) - SNP

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Items: 1 to 20 of 1709

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Select item 14906223061.

rs1490622306 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:27163424 (GRCh38)
7:27203043 (GRCh37)
Canonical SPDI:: NC_000007.14:27163423:C:G,NC_000007.14:27163423:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.27163424C>G, NC_000007.14:g.27163424C>T, NC_000007.13:g.27203043C>G, NC_000007.13:g.27203043C>T, NG_029923.1:g.7107G>C, NG_029923.1:g.7107G>A, NM_152739.4:c.*179G>C, NM_152739.4:c.*179G>A, NM_152739.3:c.*179G>C, NM_152739.3:c.*179G>A, NG_046720.1:g.463C>G, NG_046720.1:g.463C>T, NM_002142.3:c.*504G>C, NM_002142.3:c.*504G>A, NR_037940.1:n.1124G>C, NR_037940.1:n.1124G>A

Select item 14897965362.

rs1489796536 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:27166118 (GRCh38)
7:27205737 (GRCh37)
Canonical SPDI:: NC_000007.14:27166117:G:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.27166118G>T, NC_000007.13:g.27205737G>T, NG_029923.1:g.4413C>A, NG_046720.1:g.3157G>T

Select item 14897129533.

rs1489712953 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:27164368 (GRCh38)
7:27203987 (GRCh37)
Canonical SPDI:: NC_000007.14:27164367:A:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.27164368A>T, NC_000007.13:g.27203987A>T, NG_029923.1:g.6163T>A, NG_046720.1:g.1407A>T

Select item 14896601014.

rs1489660101 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 7:27163454 (GRCh38)
7:27203073 (GRCh37)
Canonical SPDI:: NC_000007.14:27163453:A:C,NC_000007.14:27163453:A:G
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000007.14:g.27163454A>C, NC_000007.14:g.27163454A>G, NC_000007.13:g.27203073A>C, NC_000007.13:g.27203073A>G, NG_029923.1:g.7077T>G, NG_029923.1:g.7077T>C, NM_152739.4:c.*149T>G, NM_152739.4:c.*149T>C, NM_152739.3:c.*149T>G, NM_152739.3:c.*149T>C, NG_046720.1:g.493A>C, NG_046720.1:g.493A>G, NM_002142.3:c.*474T>G, NM_002142.3:c.*474T>C, NR_037940.1:n.1094T>G, NR_037940.1:n.1094T>C

Select item 14895787405.

rs1489578740 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:27166437 (GRCh38)
7:27206056 (GRCh37)
Canonical SPDI:: NC_000007.14:27166436:G:A
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.27166437G>A, NC_000007.13:g.27206056G>A, NG_029923.1:g.4094C>T, NG_046720.1:g.3476G>A

Select item 14894523486.

rs1489452348 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:27166225 (GRCh38)
7:27205844 (GRCh37)
Canonical SPDI:: NC_000007.14:27166224:G:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.27166225G>T, NC_000007.13:g.27205844G>T, NG_029923.1:g.4306C>A, NG_046720.1:g.3264G>T

Select item 14879195587.

rs1487919558 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:27163218 (GRCh38)
7:27202837 (GRCh37)
Canonical SPDI:: NC_000007.14:27163217:C:A,NC_000007.14:27163217:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.27163218C>A, NC_000007.14:g.27163218C>T, NC_000007.13:g.27202837C>A, NC_000007.13:g.27202837C>T, NG_029923.1:g.7313G>T, NG_029923.1:g.7313G>A, NM_152739.4:c.*385G>T, NM_152739.4:c.*385G>A, NM_152739.3:c.*385G>T, NM_152739.3:c.*385G>A, NG_046720.1:g.257C>A, NG_046720.1:g.257C>T, NM_002142.3:c.*710G>T, NM_002142.3:c.*710G>A, NR_037940.1:n.1330G>T, NR_037940.1:n.1330G>A

Select item 14878168368.

rs1487816836 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 7:27165814 (GRCh38)
7:27205433 (GRCh37)
Canonical SPDI:: NC_000007.14:27165813:C:A,NC_000007.14:27165813:C:G,NC_000007.14:27165813:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000007.14:g.27165814C>A, NC_000007.14:g.27165814C>G, NC_000007.14:g.27165814C>T, NC_000007.13:g.27205433C>A, NC_000007.13:g.27205433C>G, NC_000007.13:g.27205433C>T, NG_029923.1:g.4717G>T, NG_029923.1:g.4717G>C, NG_029923.1:g.4717G>A, NG_046720.1:g.2853C>A, NG_046720.1:g.2853C>G, NG_046720.1:g.2853C>T

Select item 14863843519.

rs1486384351 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:27162703 (GRCh38)
7:27202322 (GRCh37)
Canonical SPDI:: NC_000007.14:27162702:C:A,NC_000007.14:27162702:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
T=0.000071/1 (TOMMO)
HGVS:: NC_000007.14:g.27162703C>A, NC_000007.14:g.27162703C>T, NC_000007.13:g.27202322C>A, NC_000007.13:g.27202322C>T, NG_029923.1:g.7828G>T, NG_029923.1:g.7828G>A, NM_152739.4:c.*900G>T, NM_152739.4:c.*900G>A, NM_152739.3:c.*900G>T, NM_152739.3:c.*900G>A, NM_002142.3:c.*1225G>T, NM_002142.3:c.*1225G>A, NR_037940.1:n.1845G>T, NR_037940.1:n.1845G>A

Select item 148631107310.

rs1486311073 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AGA [Show Flanks]
Chromosome:: 7:27165780 (GRCh38)
7:27205400 (GRCh37)
Canonical SPDI:: NC_000007.14:27165780:A:AAGA
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAGA=0./0 (ALFA)
AAG=0.000015/4 (TOPMED)
AAG=0.000029/4 (GnomAD)
HGVS:: NC_000007.14:g.27165781_27165782insAGA, NC_000007.13:g.27205400_27205401insAGA, NG_029923.1:g.4750_4751insCTT, NG_046720.1:g.2820_2821insAGA

Select item 148626353211.

rs1486263532 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:27162195 (GRCh38)
7:27201814 (GRCh37)
Canonical SPDI:: NC_000007.14:27162194:T:G
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.27162195T>G, NC_000007.13:g.27201814T>G, NG_029923.1:g.8336A>C

Select item 148622542712.

rs1486225427 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:27166286 (GRCh38)
7:27205905 (GRCh37)
Canonical SPDI:: NC_000007.14:27166285:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.27166286C>T, NC_000007.13:g.27205905C>T, NG_029923.1:g.4245G>A, NG_046720.1:g.3325C>T

Select item 148617335313.

rs1486173353 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 7:27165589 (GRCh38)
7:27205208 (GRCh37)
Canonical SPDI:: NC_000007.14:27165588:TT:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.27165590del, NC_000007.13:g.27205209del, NG_029923.1:g.4942del, NG_046720.1:g.2629del

Select item 148603527314.

rs1486035273 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:27166515 (GRCh38)
7:27206134 (GRCh37)
Canonical SPDI:: NC_000007.14:27166514:T:G
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.27166515T>G, NC_000007.13:g.27206134T>G, NG_029923.1:g.4016A>C, NG_046720.1:g.3554T>G

Select item 148567376415.

rs1485673764 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:27165229 (GRCh38)
7:27204848 (GRCh37)
Canonical SPDI:: NC_000007.14:27165228:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.27165229C>T, NC_000007.13:g.27204848C>T, NG_029923.1:g.5302G>A, NM_152739.4:c.229G>A, NM_152739.3:c.229G>A, NG_046720.1:g.2268C>T, NM_002142.3:c.229G>A, NM_002142.2:c.229G>A, NP_689952.1:p.Ala77Thr

Select item 148468107016.

rs1484681070 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:27164965 (GRCh38)
7:27204584 (GRCh37)
Canonical SPDI:: NC_000007.14:27164964:C:G,NC_000007.14:27164964:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: non_coding_transcript_variant,missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000043/1 (ALFA)
T=0.000004/1 (GnomAD_exomes)
G=0.000021/3 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000007.14:g.27164965C>G, NC_000007.14:g.27164965C>T, NC_000007.13:g.27204584C>G, NC_000007.13:g.27204584C>T, NG_029923.1:g.5566G>C, NG_029923.1:g.5566G>A, NM_152739.4:c.493G>C, NM_152739.4:c.493G>A, NM_152739.3:c.493G>C, NM_152739.3:c.493G>A, NG_046720.1:g.2004C>G, NG_046720.1:g.2004C>T, NM_002142.3:c.320G>C, NM_002142.3:c.320G>A, NM_002142.2:c.490G>C, NM_002142.2:c.490G>A, NR_037940.1:n.619G>C, NR_037940.1:n.619G>A, NP_689952.1:p.Asp165His, NP_689952.1:p.Asp165Asn

Select item 148405666517.

rs1484056665 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:27166520 (GRCh38)
7:27206139 (GRCh37)
Canonical SPDI:: NC_000007.14:27166519:T:G
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.27166520T>G, NC_000007.13:g.27206139T>G, NG_029923.1:g.4011A>C, NG_046720.1:g.3559T>G

Select item 148392664818.

rs1483926648 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:27164161 (GRCh38)
7:27203780 (GRCh37)
Canonical SPDI:: NC_000007.14:27164160:C:G,NC_000007.14:27164160:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.27164161C>G, NC_000007.14:g.27164161C>T, NC_000007.13:g.27203780C>G, NC_000007.13:g.27203780C>T, NG_029923.1:g.6370G>C, NG_029923.1:g.6370G>A, NG_046720.1:g.1200C>G, NG_046720.1:g.1200C>T

Select item 148389814119.

rs1483898141 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:27164626 (GRCh38)
7:27204245 (GRCh37)
Canonical SPDI:: NC_000007.14:27164625:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
T=0.000342/1 (KOREAN)
HGVS:: NC_000007.14:g.27164626C>T, NC_000007.13:g.27204245C>T, NG_029923.1:g.5905G>A, NG_046720.1:g.1665C>T

Select item 148318548320.

rs1483185483 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:27164188 (GRCh38)
7:27203807 (GRCh37)
Canonical SPDI:: NC_000007.14:27164187:T:C
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.27164188T>C, NC_000007.13:g.27203807T>C, NG_029923.1:g.6343A>G, NG_046720.1:g.1227T>C

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