Links from Gene
Items: 1 to 20 of 5720
1.
rs1491292977 has merged into rs71380102 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTT>-,TT,TTT,TTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 9:127907074
(GRCh38)
9:130669353
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127907063:TTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000009.12:127907063:TTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000009.12:127907063:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000009.12:127907063:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000009.12:127907063:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000009.12:127907063:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000009.12:127907063:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000009.12:127907063:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTT=0./0
(
ALFA)
T=0.0003/1
(TWINSUK)
T=0.0008/3
(ALSPAC)
T=0.1975/989
(1000Genomes)
T=0.325/13
(GENOME_DK)
- HGVS:
NC_000009.12:g.127907074_127907078del, NC_000009.12:g.127907076_127907078del, NC_000009.12:g.127907077_127907078del, NC_000009.12:g.127907078del, NC_000009.12:g.127907078dup, NC_000009.12:g.127907077_127907078dup, NC_000009.12:g.127907076_127907078dup, NC_000009.12:g.127907071_127907078dup, NC_000009.11:g.130669353_130669357del, NC_000009.11:g.130669355_130669357del, NC_000009.11:g.130669356_130669357del, NC_000009.11:g.130669357del, NC_000009.11:g.130669357dup, NC_000009.11:g.130669356_130669357dup, NC_000009.11:g.130669355_130669357dup, NC_000009.11:g.130669350_130669357dup
4.
rs1491175458 has merged into rs10551658 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTTTTTTTTT>-,T,TTT,TTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 9:127903001
(GRCh38)
9:130665280
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTT=0./0
(
ALFA)
TT=0.425/17
(GENOME_DK)
- HGVS:
NC_000009.12:g.127903001_127903014del, NC_000009.12:g.127903002_127903014del, NC_000009.12:g.127903004_127903014del, NC_000009.12:g.127903006_127903014del, NC_000009.12:g.127903009_127903014del, NC_000009.12:g.127903010_127903014del, NC_000009.12:g.127903011_127903014del, NC_000009.12:g.127903012_127903014del, NC_000009.12:g.127903013_127903014del, NC_000009.12:g.127903014del, NC_000009.12:g.127903014dup, NC_000009.12:g.127903013_127903014dup, NC_000009.12:g.127903012_127903014dup, NC_000009.12:g.127903011_127903014dup, NC_000009.12:g.127903010_127903014dup, NC_000009.12:g.127903009_127903014dup, NC_000009.12:g.127903008_127903014dup, NC_000009.12:g.127903006_127903014dup, NC_000009.12:g.127903014_127903015insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000009.12:g.127903014_127903015insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000009.11:g.130665280_130665293del, NC_000009.11:g.130665281_130665293del, NC_000009.11:g.130665283_130665293del, NC_000009.11:g.130665285_130665293del, NC_000009.11:g.130665288_130665293del, NC_000009.11:g.130665289_130665293del, NC_000009.11:g.130665290_130665293del, NC_000009.11:g.130665291_130665293del, NC_000009.11:g.130665292_130665293del, NC_000009.11:g.130665293del, NC_000009.11:g.130665293dup, NC_000009.11:g.130665292_130665293dup, NC_000009.11:g.130665291_130665293dup, NC_000009.11:g.130665290_130665293dup, NC_000009.11:g.130665289_130665293dup, NC_000009.11:g.130665288_130665293dup, NC_000009.11:g.130665287_130665293dup, NC_000009.11:g.130665285_130665293dup, NC_000009.11:g.130665293_130665294insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000009.11:g.130665293_130665294insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5.
rs1491157312 has merged into rs10551658 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTTTTTTTTT>-,T,TTT,TTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 9:127903001
(GRCh38)
9:130665280
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000009.12:127902990:TTTTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTT=0./0
(
ALFA)
TT=0.425/17
(GENOME_DK)
- HGVS:
NC_000009.12:g.127903001_127903014del, NC_000009.12:g.127903002_127903014del, NC_000009.12:g.127903004_127903014del, NC_000009.12:g.127903006_127903014del, NC_000009.12:g.127903009_127903014del, NC_000009.12:g.127903010_127903014del, NC_000009.12:g.127903011_127903014del, NC_000009.12:g.127903012_127903014del, NC_000009.12:g.127903013_127903014del, NC_000009.12:g.127903014del, NC_000009.12:g.127903014dup, NC_000009.12:g.127903013_127903014dup, NC_000009.12:g.127903012_127903014dup, NC_000009.12:g.127903011_127903014dup, NC_000009.12:g.127903010_127903014dup, NC_000009.12:g.127903009_127903014dup, NC_000009.12:g.127903008_127903014dup, NC_000009.12:g.127903006_127903014dup, NC_000009.12:g.127903014_127903015insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000009.12:g.127903014_127903015insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000009.11:g.130665280_130665293del, NC_000009.11:g.130665281_130665293del, NC_000009.11:g.130665283_130665293del, NC_000009.11:g.130665285_130665293del, NC_000009.11:g.130665288_130665293del, NC_000009.11:g.130665289_130665293del, NC_000009.11:g.130665290_130665293del, NC_000009.11:g.130665291_130665293del, NC_000009.11:g.130665292_130665293del, NC_000009.11:g.130665293del, NC_000009.11:g.130665293dup, NC_000009.11:g.130665292_130665293dup, NC_000009.11:g.130665291_130665293dup, NC_000009.11:g.130665290_130665293dup, NC_000009.11:g.130665289_130665293dup, NC_000009.11:g.130665288_130665293dup, NC_000009.11:g.130665287_130665293dup, NC_000009.11:g.130665285_130665293dup, NC_000009.11:g.130665293_130665294insTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000009.11:g.130665293_130665294insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
6.
rs1490871024 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>G
[Show Flanks]
- Chromosome:
- 9:127886348
(GRCh38)
9:130648627
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127886347:T:G
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,3_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000007/1
(GnomAD)
G=0.000011/3
(TOPMED)
- HGVS:
NC_000009.12:g.127886348T>G, NC_000009.11:g.130648627T>G, NM_013443.5:c.*251A>C, NM_013443.4:c.*251A>C, NM_013443.3:c.*251A>C, NM_001287001.2:c.*251A>C, NM_001287001.1:c.*251A>C, NM_001286999.2:c.*124A>C, NM_001286999.1:c.*124A>C, NM_001287002.2:c.*251A>C, NM_001287002.1:c.*251A>C, NM_001287000.2:c.*251A>C, NM_001287000.1:c.*251A>C, NR_104629.2:n.1322A>C, NR_104629.1:n.1346A>C, NM_001287003.2:c.*483A>C, NM_001287003.1:c.*483A>C, NR_174625.1:n.2125A>C, NR_174627.1:n.2005A>C, NR_174626.1:n.2005A>C, NR_174632.1:n.1398A>C, NR_174628.1:n.1383A>C, NR_174630.1:n.1364A>C, NR_174629.1:n.1328A>C, NR_174631.1:n.1309A>C, NR_174621.1:n.2060A>C, NR_174624.1:n.2042A>C, NR_174623.1:n.2042A>C, NM_001388489.1:c.*251A>C, NR_174620.1:n.2001A>C, NR_174618.1:n.1986A>C, NR_174619.1:n.1943A>C, NM_001400830.1:c.*251A>C, NM_001400831.1:c.*251A>C, NM_001400834.1:c.*124A>C, NM_001400835.1:c.*124A>C, NR_174615.1:n.1364A>C, NM_001400833.1:c.*124A>C, NR_174616.1:n.1321A>C, NR_174612.1:n.1317A>C, NR_174617.1:n.1309A>C, NR_174613.1:n.1302A>C, NR_174614.1:n.1266A>C, NM_001400832.1:c.*483A>C
7.
rs1490795099 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A,T
[Show Flanks]
- Chromosome:
- 9:127900548
(GRCh38)
9:130662827
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127900547:G:A,NC_000009.12:127900547:G:T
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0.00025/4
(
ALFA)
T=0.00004/3
(GnomAD)
T=0.00061/10
(TOMMO)
T=0.00092/4
(Estonian)
T=0.00281/18
(1000Genomes)
- HGVS:
8.
rs1490713742 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:127896058
(GRCh38)
9:130658337
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127896057:C:T
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0./0
(
ALFA)
T=0.000004/1
(TOPMED)
- HGVS:
9.
rs1490671373 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:127888198
(GRCh38)
9:130650477
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127888197:C:T
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000007/1
(GnomAD)
T=0.000008/2
(TOPMED)
- HGVS:
10.
rs1490623479 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>G
[Show Flanks]
- Chromosome:
- 9:127901748
(GRCh38)
9:130664027
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127901747:A:G
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0./0
(
ALFA)
G=0.000007/1
(GnomAD)
G=0.000015/4
(TOPMED)
- HGVS:
11.
rs1490471032 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:127887621
(GRCh38)
9:130649900
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127887620:C:T
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by cluster
- MAF:
T=0.000014/3
(GnomAD_exomes)
- HGVS:
12.
rs1490327846 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>C
[Show Flanks]
- Chromosome:
- 9:127886035
(GRCh38)
9:130648314
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127886034:G:C
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- non_coding_transcript_variant,3_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000004/1
(TOPMED)
C=0.000014/2
(GnomAD)
- HGVS:
NC_000009.12:g.127886035G>C, NC_000009.11:g.130648314G>C, NM_013443.5:c.*564C>G, NM_013443.4:c.*564C>G, NM_013443.3:c.*564C>G, NM_001287001.2:c.*564C>G, NM_001287001.1:c.*564C>G, NM_001286999.2:c.*437C>G, NM_001286999.1:c.*437C>G, NM_001287002.2:c.*564C>G, NM_001287002.1:c.*564C>G, NM_001287000.2:c.*564C>G, NM_001287000.1:c.*564C>G, NR_104629.2:n.1635C>G, NR_104629.1:n.1659C>G, NM_001287003.2:c.*796C>G, NM_001287003.1:c.*796C>G, NR_174625.1:n.2438C>G, NR_174627.1:n.2318C>G, NR_174626.1:n.2318C>G, NR_174632.1:n.1711C>G, NR_174628.1:n.1696C>G, NR_174630.1:n.1677C>G, NR_174629.1:n.1641C>G, NR_174631.1:n.1622C>G, NR_174621.1:n.2373C>G, NR_174624.1:n.2355C>G, NR_174623.1:n.2355C>G, NM_001388489.1:c.*564C>G, NR_174620.1:n.2314C>G, NR_174618.1:n.2299C>G, NR_174619.1:n.2256C>G, NM_001400830.1:c.*564C>G, NM_001400831.1:c.*564C>G, NM_001400834.1:c.*437C>G, NM_001400835.1:c.*437C>G, NR_174615.1:n.1677C>G, NM_001400833.1:c.*437C>G, NR_174616.1:n.1634C>G, NR_174612.1:n.1630C>G, NR_174617.1:n.1622C>G, NR_174613.1:n.1615C>G, NR_174614.1:n.1579C>G, NM_001400832.1:c.*796C>G
14.
rs1489940804 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 9:127890264
(GRCh38)
9:130652543
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127890263:C:T
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
T=0.000021/3
(GnomAD)
T=0.00003/8
(TOPMED)
- HGVS:
15.
rs1489889198 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 9:127888577
(GRCh38)
9:130650856
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127888576:G:A
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000036/5
(GnomAD)
- HGVS:
16.
rs1489847405 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>A
[Show Flanks]
- Chromosome:
- 9:127904007
(GRCh38)
9:130666286
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127904006:T:A
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa
- MAF:
A=0.000071/1
(
ALFA)
A=0.000004/1
(TOPMED)
- HGVS:
17.
rs1489451813 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- A>C
[Show Flanks]
- Chromosome:
- 9:127888840
(GRCh38)
9:130651119
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127888839:A:C
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
C=0.000084/1
(
ALFA)
C=0.000022/3
(GnomAD)
- HGVS:
18.
rs1489424609 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>G,T
[Show Flanks]
- Chromosome:
- 9:127896763
(GRCh38)
9:130659042
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127896762:C:G,NC_000009.12:127896762:C:T
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
T=0./0
(
ALFA)
G=0.000021/3
(GnomAD)
- HGVS:
19.
rs1489379404 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 9:127897734
(GRCh38)
9:130660013
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127897733:T:C
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000008/2
(TOPMED)
C=0.000014/2
(GnomAD)
- HGVS:
20.
rs1489143924 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 9:127904277
(GRCh38)
9:130666556
(GRCh37)
- Canonical SPDI:
- NC_000009.12:127904276:T:C
- Gene:
- ST6GALNAC6 (Varview), ST6GALNAC4-ST6GALNAC6-AK1 (Varview)
- Functional Consequence:
- genic_upstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0.000071/1
(
ALFA)
C=0.000014/2
(GnomAD)
C=0.000026/7
(TOPMED)
- HGVS: