SNP Links for Gene (Select 29801) - SNP

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Select item 14911841871.

rs1491184187 has merged into rs533822857 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGGG>-,GG,GGG,GGGGG,GGGGGG,GGGGGGG,GGGGGGGG [Show Flanks]
Chromosome:: 22:20131104 (GRCh38)
22:20118627 (GRCh37)
Canonical SPDI:: NC_000022.11:20131098:GGGGGGGGG:GGGGG,NC_000022.11:20131098:GGGGGGGGG:GGGGGGG,NC_000022.11:20131098:GGGGGGGGG:GGGGGGGG,NC_000022.11:20131098:GGGGGGGGG:GGGGGGGGGG,NC_000022.11:20131098:GGGGGGGGG:GGGGGGGGGGG,NC_000022.11:20131098:GGGGGGGGG:GGGGGGGGGGGG,NC_000022.11:20131098:GGGGGGGGG:GGGGGGGGGGGGG
Gene:: ZDHHC8 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGG=0./0 (ALFA)
-=0.175/7 (GENOME_DK)
G=0.20266/122 (1000Genomes)
HGVS:: NC_000022.11:g.20131104_20131107del, NC_000022.11:g.20131106_20131107del, NC_000022.11:g.20131107del, NC_000022.11:g.20131107dup, NC_000022.11:g.20131106_20131107dup, NC_000022.11:g.20131105_20131107dup, NC_000022.11:g.20131104_20131107dup, NC_000022.10:g.20118627_20118630del, NC_000022.10:g.20118629_20118630del, NC_000022.10:g.20118630del, NC_000022.10:g.20118630dup, NC_000022.10:g.20118629_20118630dup, NC_000022.10:g.20118628_20118630dup, NC_000022.10:g.20118627_20118630dup, NG_021420.1:g.4264_4267del, NG_021420.1:g.4266_4267del, NG_021420.1:g.4267del, NG_021420.1:g.4267dup, NG_021420.1:g.4266_4267dup, NG_021420.1:g.4265_4267dup, NG_021420.1:g.4264_4267dup

Select item 14907872772.

rs1490787277 has merged into rs34467871 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAA>-,AAA,AAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 22:20133730 (GRCh38)
22:20121253 (GRCh37)
Canonical SPDI:: NC_000022.11:20133721:AAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000022.11:20133721:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000022.11:20133721:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000022.11:20133721:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000022.11:20133721:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000022.11:20133721:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000022.11:20133721:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000022.11:20133721:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000022.11:20133721:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000022.11:20133721:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA
Gene:: ZDHHC8 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
-=0.047/25 (NorthernSweden)
HGVS:: NC_000022.11:g.20133730_20133740del, NC_000022.11:g.20133733_20133740del, NC_000022.11:g.20133734_20133740del, NC_000022.11:g.20133737_20133740del, NC_000022.11:g.20133738_20133740del, NC_000022.11:g.20133739_20133740del, NC_000022.11:g.20133740del, NC_000022.11:g.20133740dup, NC_000022.11:g.20133739_20133740dup, NC_000022.11:g.20133738_20133740dup, NC_000022.10:g.20121253_20121263del, NC_000022.10:g.20121256_20121263del, NC_000022.10:g.20121257_20121263del, NC_000022.10:g.20121260_20121263del, NC_000022.10:g.20121261_20121263del, NC_000022.10:g.20121262_20121263del, NC_000022.10:g.20121263del, NC_000022.10:g.20121263dup, NC_000022.10:g.20121262_20121263dup, NC_000022.10:g.20121261_20121263dup, NG_021420.1:g.6890_6900del, NG_021420.1:g.6893_6900del, NG_021420.1:g.6894_6900del, NG_021420.1:g.6897_6900del, NG_021420.1:g.6898_6900del, NG_021420.1:g.6899_6900del, NG_021420.1:g.6900del, NG_021420.1:g.6900dup, NG_021420.1:g.6899_6900dup, NG_021420.1:g.6898_6900dup

Select item 14907720663.

rs1490772066 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:20134669 (GRCh38)
22:20122192 (GRCh37)
Canonical SPDI:: NC_000022.11:20134668:G:A
Gene:: ZDHHC8 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.20134669G>A, NC_000022.10:g.20122192G>A, NG_021420.1:g.7829G>A

Select item 14906959164.

rs1490695916 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:20132962 (GRCh38)
22:20120485 (GRCh37)
Canonical SPDI:: NC_000022.11:20132961:A:G
Gene:: ZDHHC8 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000022.11:g.20132962A>G, NC_000022.10:g.20120485A>G, NG_021420.1:g.6122A>G

Select item 14906748925.

rs1490674892 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:20139792 (GRCh38)
22:20127315 (GRCh37)
Canonical SPDI:: NC_000022.11:20139791:C:T
Gene:: ZDHHC8 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: T=0.000047/1 (ALFA)
T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000022.11:g.20139792C>T, NC_000022.10:g.20127315C>T, NG_021420.1:g.12952C>T, NM_013373.4:c.457C>T, NM_013373.3:c.457C>T, NM_001185024.2:c.457C>T, NM_001185024.1:c.457C>T, XM_006724239.3:c.457C>T, XM_006724239.2:c.457C>T, XM_006724239.1:c.457C>T

Select item 14906495766.

rs1490649576 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:20131940 (GRCh38)
22:20119463 (GRCh37)
Canonical SPDI:: NC_000022.11:20131939:C:T
Gene:: ZDHHC8 (Varview)
Functional Consequence:: 5_prime_UTR_variant
HGVS:: NC_000022.11:g.20131940C>T, NC_000022.10:g.20119463C>T, NG_021420.1:g.5100C>T, NM_013373.4:c.-8C>T, NM_013373.3:c.-8C>T, NM_001185024.2:c.-8C>T, NM_001185024.1:c.-8C>T, XM_006724239.3:c.-8C>T, XM_006724239.2:c.-8C>T, XM_006724239.1:c.-8C>T

Select item 14905855847.

rs1490585584 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:20140120 (GRCh38)
22:20127643 (GRCh37)
Canonical SPDI:: NC_000022.11:20140119:C:T
Gene:: ZDHHC8 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
HGVS:: NC_000022.11:g.20140120C>T, NC_000022.10:g.20127643C>T, NG_021420.1:g.13280C>T, NM_013373.4:c.563C>T, NM_013373.3:c.563C>T, NM_001185024.2:c.563C>T, NM_001185024.1:c.563C>T, XM_006724239.3:c.563C>T, XM_006724239.2:c.563C>T, XM_006724239.1:c.563C>T, NP_037505.1:p.Ala188Val, NP_001171953.1:p.Ala188Val, XP_006724302.1:p.Ala188Val

Select item 14905746768.

rs1490574676 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:20139964 (GRCh38)
22:20127487 (GRCh37)
Canonical SPDI:: NC_000022.11:20139963:G:C
Gene:: ZDHHC8 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20139964G>C, NC_000022.10:g.20127487G>C, NG_021420.1:g.13124G>C

Select item 14904257419.

rs1490425741 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:20147185 (GRCh38)
22:20134708 (GRCh37)
Canonical SPDI:: NC_000022.11:20147184:T:C
Gene:: ZDHHC8 (Varview)
Functional Consequence:: 3_prime_UTR_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.20147185T>C, NC_000022.10:g.20134708T>C, NG_021420.1:g.20345T>C, NM_013373.4:c.*1785T>C, NM_013373.3:c.*1785T>C, NM_001185024.2:c.2291T>C, NM_001185024.1:c.2291T>C, XM_006724239.3:c.2291T>C, XM_006724239.2:c.2291T>C, XM_006724239.1:c.2291T>C, NP_001171953.1:p.Leu764Pro, XP_006724302.1:p.Leu764Pro

Select item 149020801210.

rs1490208012 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:20136003 (GRCh38)
22:20123526 (GRCh37)
Canonical SPDI:: NC_000022.11:20136002:T:C
Gene:: ZDHHC8 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20136003T>C, NC_000022.10:g.20123526T>C, NG_021420.1:g.9163T>C

Select item 149015196411.

rs1490151964 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 22:20133857 (GRCh38)
22:20121380 (GRCh37)
Canonical SPDI:: NC_000022.11:20133856:G:A,NC_000022.11:20133856:G:T
Gene:: ZDHHC8 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000023/6 (TOPMED)
T=0.000035/1 (TOMMO)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000022.11:g.20133857G>A, NC_000022.11:g.20133857G>T, NC_000022.10:g.20121380G>A, NC_000022.10:g.20121380G>T, NG_021420.1:g.7017G>A, NG_021420.1:g.7017G>T

Select item 149009562212.

rs1490095622 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:20147884 (GRCh38)
22:20135407 (GRCh37)
Canonical SPDI:: NC_000022.11:20147883:T:C
Gene:: ZDHHC8 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.20147884T>C, NC_000022.10:g.20135407T>C, NG_021420.1:g.21044T>C, NM_013373.4:c.*2484T>C, NM_013373.3:c.*2484T>C, NM_001185024.2:c.*653T>C, NM_001185024.1:c.*653T>C, XM_006724239.3:c.*252T>C, XM_006724239.2:c.*252T>C, XM_006724239.1:c.*252T>C

Select item 148995332313.

rs1489953323 [Homo sapiens]

Variant type:: DELINS
Alleles:: CC>-,C [Show Flanks]
Chromosome:: 22:20148395 (GRCh38)
22:20135918 (GRCh37)
Canonical SPDI:: NC_000022.11:20148391:CCCCC:CCC,NC_000022.11:20148391:CCCCC:CCCC
Gene:: ZDHHC8 (Varview), CCDC188 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCC=0./0 (ALFA)
-=0.000023/6 (TOPMED)
HGVS:: NC_000022.11:g.20148395_20148396del, NC_000022.11:g.20148396del, NC_000022.10:g.20135918_20135919del, NC_000022.10:g.20135919del, NG_021420.1:g.21555_21556del, NG_021420.1:g.21556del

Select item 148995302114.

rs1489953021 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:20135216 (GRCh38)
22:20122739 (GRCh37)
Canonical SPDI:: NC_000022.11:20135215:A:G
Gene:: ZDHHC8 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.20135216A>G, NC_000022.10:g.20122739A>G, NG_021420.1:g.8376A>G

Select item 148983356015.

rs1489833560 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:20142467 (GRCh38)
22:20129990 (GRCh37)
Canonical SPDI:: NC_000022.11:20142466:C:T
Gene:: ZDHHC8 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20142467C>T, NC_000022.10:g.20129990C>T, NG_021420.1:g.15627C>T

Select item 148974370216.

rs1489743702 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 22:20132591 (GRCh38)
22:20120114 (GRCh37)
Canonical SPDI:: NC_000022.11:20132590:A:T
Gene:: ZDHHC8 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000022.11:g.20132591A>T, NC_000022.10:g.20120114A>T, NG_021420.1:g.5751A>T

Select item 148950271817.

rs1489502718 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:20147198 (GRCh38)
22:20134721 (GRCh37)
Canonical SPDI:: NC_000022.11:20147197:C:T
Gene:: ZDHHC8 (Varview)
Functional Consequence:: 3_prime_UTR_variant,coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000018/2 (GnomAD_exomes)
HGVS:: NC_000022.11:g.20147198C>T, NC_000022.10:g.20134721C>T, NG_021420.1:g.20358C>T, NM_013373.4:c.*1798C>T, NM_013373.3:c.*1798C>T, NM_001185024.2:c.2304C>T, NM_001185024.1:c.2304C>T, XM_006724239.3:c.2304C>T, XM_006724239.2:c.2304C>T, XM_006724239.1:c.2304C>T

Select item 148938704618.

rs1489387046 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:20138936 (GRCh38)
22:20126459 (GRCh37)
Canonical SPDI:: NC_000022.11:20138935:T:C
Gene:: ZDHHC8 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20138936T>C, NC_000022.10:g.20126459T>C, NG_021420.1:g.12096T>C

Select item 148927439419.

rs1489274394 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:20140080 (GRCh38)
22:20127603 (GRCh37)
Canonical SPDI:: NC_000022.11:20140079:T:C
Gene:: ZDHHC8 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.20140080T>C, NC_000022.10:g.20127603T>C, NG_021420.1:g.13240T>C

Select item 148906602820.

rs1489066028 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 22:20134692 (GRCh38)
22:20122215 (GRCh37)
Canonical SPDI:: NC_000022.11:20134691:G:A,NC_000022.11:20134691:G:T
Gene:: ZDHHC8 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000066/1 (ALFA)
A=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000022.11:g.20134692G>A, NC_000022.11:g.20134692G>T, NC_000022.10:g.20122215G>A, NC_000022.10:g.20122215G>T, NG_021420.1:g.7852G>A, NG_021420.1:g.7852G>T

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