SNP Links for Gene (Select 2941) - SNP

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Select item 14915232731.

rs1491523273 has merged into rs1211162236 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,TTTT,TTTTT [Show Flanks]
Chromosome:: 6:52980309 (GRCh38)
6:52845107 (GRCh37)
Canonical SPDI:: NC_000006.12:52980307:TTT:T,NC_000006.12:52980307:TTT:TTTTT,NC_000006.12:52980307:TTT:TTTTTT
Gene:: GSTA4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.52980309_52980310del, NC_000006.12:g.52980309_52980310dup, NC_000006.12:g.52980308_52980310dup, NC_000006.11:g.52845107_52845108del, NC_000006.11:g.52845107_52845108dup, NC_000006.11:g.52845106_52845108dup

Select item 14914728952.

rs1491472895 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 6:52997120 (GRCh38)
6:52861918 (GRCh37)
Canonical SPDI:: NC_000006.12:52997119:AA:
Gene:: GSTA4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000006.12:g.52997120_52997121del, NC_000006.11:g.52861918_52861919del

Select item 14914582053.

rs1491458205 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TA [Show Flanks]
Chromosome:: 6:52997120 (GRCh38)
6:52861919 (GRCh37)
Canonical SPDI:: NC_000006.12:52997120:A:ATA
Gene:: GSTA4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: ATA=0./0 (ALFA)
AT=0.00002/2 (GnomAD)
HGVS:: NC_000006.12:g.52997121_52997122insTA, NC_000006.11:g.52861919_52861920insTA

Select item 14910479964.

rs1491047996 has merged into rs67390777 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAA [Show Flanks]
Chromosome:: 6:52982363 (GRCh38)
6:52847161 (GRCh37)
Canonical SPDI:: NC_000006.12:52982352:AAAAAAAAAAAA:AAAAAAAAAA,NC_000006.12:52982352:AAAAAAAAAAAA:AAAAAAAAAAA,NC_000006.12:52982352:AAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000006.12:52982352:AAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000006.12:52982352:AAAAAAAAAAAA:AAAAAAAAAAAAAAA
Gene:: GSTA4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
A=0.0974/297 (1000Genomes)
HGVS:: NC_000006.12:g.52982363_52982364del, NC_000006.12:g.52982364del, NC_000006.12:g.52982364dup, NC_000006.12:g.52982363_52982364dup, NC_000006.12:g.52982362_52982364dup, NC_000006.11:g.52847161_52847162del, NC_000006.11:g.52847162del, NC_000006.11:g.52847162dup, NC_000006.11:g.52847161_52847162dup, NC_000006.11:g.52847160_52847162dup

Select item 14908274835.

rs1490827483 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 6:52992205 (GRCh38)
6:52857003 (GRCh37)
Canonical SPDI:: NC_000006.12:52992204:AAA:AA
Gene:: GSTA4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000064/17 (TOPMED)
HGVS:: NC_000006.12:g.52992207del, NC_000006.11:g.52857005del

Select item 14908033506.

rs1490803350 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:52994020 (GRCh38)
6:52858818 (GRCh37)
Canonical SPDI:: NC_000006.12:52994019:G:A
Gene:: GSTA4 (Varview), RN7SK (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000006.12:g.52994020G>A, NC_000006.11:g.52858818G>A

Select item 14906634887.

rs1490663488 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:52991165 (GRCh38)
6:52855963 (GRCh37)
Canonical SPDI:: NC_000006.12:52991164:C:T
Gene:: GSTA4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.52991165C>T, NC_000006.11:g.52855963C>T

Select item 14905853108.

rs1490585310 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 6:52988954 (GRCh38)
6:52853752 (GRCh37)
Canonical SPDI:: NC_000006.12:52988953:C:A,NC_000006.12:52988953:C:T
Gene:: GSTA4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.52988954C>A, NC_000006.12:g.52988954C>T, NC_000006.11:g.52853752C>A, NC_000006.11:g.52853752C>T

Select item 14905412429.

rs1490541242 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:52991821 (GRCh38)
6:52856619 (GRCh37)
Canonical SPDI:: NC_000006.12:52991820:A:C
Gene:: GSTA4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/2 (GnomAD)
HGVS:: NC_000006.12:g.52991821A>C, NC_000006.11:g.52856619A>C

Select item 149035342310.

rs1490353423 [Homo sapiens]

Variant type:: DEL
Alleles:: CAA>- [Show Flanks]
Chromosome:: 6:52993374 (GRCh38)
6:52858172 (GRCh37)
Canonical SPDI:: NC_000006.12:52993373:CAA:
Gene:: GSTA4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000029/4 (GnomAD)
HGVS:: NC_000006.12:g.52993374_52993376del, NC_000006.11:g.52858172_52858174del

Select item 149033509411.

rs1490335094 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:52993337 (GRCh38)
6:52858135 (GRCh37)
Canonical SPDI:: NC_000006.12:52993336:G:A
Gene:: GSTA4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000029/4 (GnomAD)
A=0.000035/1 (TOMMO)
A=0.001369/4 (KOREAN)
A=0.003275/6 (Korea1K)
HGVS:: NC_000006.12:g.52993337G>A, NC_000006.11:g.52858135G>A

Select item 149026818512.

rs1490268185 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:52991918 (GRCh38)
6:52856716 (GRCh37)
Canonical SPDI:: NC_000006.12:52991917:A:G
Gene:: GSTA4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.52991918A>G, NC_000006.11:g.52856716A>G

Select item 149005937813.

rs1490059378 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 6:52995476 (GRCh38)
6:52860274 (GRCh37)
Canonical SPDI:: NC_000006.12:52995475:G:A,NC_000006.12:52995475:G:C
Gene:: GSTA4 (Varview), RN7SK (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.52995476G>A, NC_000006.12:g.52995476G>C, NC_000006.11:g.52860274G>A, NC_000006.11:g.52860274G>C

Select item 148989764514.

rs1489897645 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:52994640 (GRCh38)
6:52859438 (GRCh37)
Canonical SPDI:: NC_000006.12:52994639:G:A
Gene:: GSTA4 (Varview), RN7SK (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.0002/1 (ALFA)
A=0.0002/1 (Estonian)
HGVS:: NC_000006.12:g.52994640G>A, NC_000006.11:g.52859438G>A

Select item 148977109415.

rs1489771094 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:52985055 (GRCh38)
6:52849853 (GRCh37)
Canonical SPDI:: NC_000006.12:52985054:A:T
Gene:: GSTA4 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.52985055A>T, NC_000006.11:g.52849853A>T

Select item 148974451416.

rs1489744514 [Homo sapiens]

Variant type:: INS
Alleles:: ->CTTCGGTCAAGGG,CTTCGGTCAAGGGTATACGAG,CTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGC [Show Flanks]
Chromosome:: 6:52995971 (GRCh38)
6:52860770 (GRCh37)
Canonical SPDI:: NC_000006.12:52995971::CTTCGGTCAAGGG,NC_000006.12:52995971::CTTCGGTCAAGGGTATACGAG,NC_000006.12:52995971::CTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGC
Gene:: GSTA4 (Varview), RN7SK (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTTCGGTCAAGGGTATACGAG=0.0031/14 (ALFA)
HGVS:: NC_000006.12:g.52995971_52995972insCTTCGGTCAAGGG, NC_000006.12:g.52995971_52995972insCTTCGGTCAAGGGTATACGAG, NC_000006.12:g.52995971_52995972insCTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGC, NC_000006.11:g.52860769_52860770insCTTCGGTCAAGGG, NC_000006.11:g.52860769_52860770insCTTCGGTCAAGGGTATACGAG, NC_000006.11:g.52860769_52860770insCTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGC

Select item 148969358517.

rs1489693585 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:52997009 (GRCh38)
6:52861807 (GRCh37)
Canonical SPDI:: NC_000006.12:52997008:A:G
Gene:: GSTA4 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.52997009A>G, NC_000006.11:g.52861807A>G

Select item 148947808018.

rs1489478080 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:52994958 (GRCh38)
6:52859756 (GRCh37)
Canonical SPDI:: NC_000006.12:52994957:G:A
Gene:: GSTA4 (Varview), RN7SK (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.52994958G>A, NC_000006.11:g.52859756G>A

Select item 148941820319.

rs1489418203 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:52993955 (GRCh38)
6:52858753 (GRCh37)
Canonical SPDI:: NC_000006.12:52993954:A:G
Gene:: GSTA4 (Varview), RN7SK (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.52993955A>G, NC_000006.11:g.52858753A>G

Select item 148938689820.

rs1489386898 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:52995021 (GRCh38)
6:52859819 (GRCh37)
Canonical SPDI:: NC_000006.12:52995020:A:T
Gene:: GSTA4 (Varview), RN7SK (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.52995021A>T, NC_000006.11:g.52859819A>T

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