SNP Links for Gene (Select 285084) - SNP

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Select item 14915251841.

rs1491525184 has merged into rs11345114 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 2:174330517 (GRCh38)
2:175195245 (GRCh37)
Canonical SPDI:: NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000002.12:174330510:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC01305 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAA=0./0 (ALFA)
HGVS:: NC_000002.12:g.174330517_174330526del, NC_000002.12:g.174330518_174330526del, NC_000002.12:g.174330519_174330526del, NC_000002.12:g.174330520_174330526del, NC_000002.12:g.174330521_174330526del, NC_000002.12:g.174330522_174330526del, NC_000002.12:g.174330523_174330526del, NC_000002.12:g.174330524_174330526del, NC_000002.12:g.174330525_174330526del, NC_000002.12:g.174330526del, NC_000002.12:g.174330526dup, NC_000002.12:g.174330525_174330526dup, NC_000002.12:g.174330524_174330526dup, NC_000002.12:g.174330523_174330526dup, NC_000002.12:g.174330522_174330526dup, NC_000002.12:g.174330521_174330526dup, NC_000002.12:g.174330520_174330526dup, NC_000002.12:g.174330519_174330526dup, NC_000002.12:g.174330518_174330526dup, NC_000002.12:g.174330517_174330526dup, NC_000002.12:g.174330516_174330526dup, NC_000002.12:g.174330515_174330526dup, NC_000002.12:g.174330514_174330526dup, NC_000002.12:g.174330513_174330526dup, NC_000002.12:g.174330512_174330526dup, NC_000002.12:g.174330526_174330527insAAAAAAAAAAAAAAAAAAAAAAA, NC_000002.11:g.175195245_175195254del, NC_000002.11:g.175195246_175195254del, NC_000002.11:g.175195247_175195254del, NC_000002.11:g.175195248_175195254del, NC_000002.11:g.175195249_175195254del, NC_000002.11:g.175195250_175195254del, NC_000002.11:g.175195251_175195254del, NC_000002.11:g.175195252_175195254del, NC_000002.11:g.175195253_175195254del, NC_000002.11:g.175195254del, NC_000002.11:g.175195254dup, NC_000002.11:g.175195253_175195254dup, NC_000002.11:g.175195252_175195254dup, NC_000002.11:g.175195251_175195254dup, NC_000002.11:g.175195250_175195254dup, NC_000002.11:g.175195249_175195254dup, NC_000002.11:g.175195248_175195254dup, NC_000002.11:g.175195247_175195254dup, NC_000002.11:g.175195246_175195254dup, NC_000002.11:g.175195245_175195254dup, NC_000002.11:g.175195244_175195254dup, NC_000002.11:g.175195243_175195254dup, NC_000002.11:g.175195242_175195254dup, NC_000002.11:g.175195241_175195254dup, NC_000002.11:g.175195240_175195254dup, NC_000002.11:g.175195254_175195255insAAAAAAAAAAAAAAAAAAAAAAA, NR_038897.1:n.2997_3006del, NR_038897.1:n.2998_3006del, NR_038897.1:n.2999_3006del, NR_038897.1:n.3000_3006del, NR_038897.1:n.3001_3006del, NR_038897.1:n.3002_3006del, NR_038897.1:n.3003_3006del, NR_038897.1:n.3004_3006del, NR_038897.1:n.3005_3006del, NR_038897.1:n.3006del, NR_038897.1:n.3006dup, NR_038897.1:n.3005_3006dup, NR_038897.1:n.3004_3006dup, NR_038897.1:n.3003_3006dup, NR_038897.1:n.3002_3006dup, NR_038897.1:n.3001_3006dup, NR_038897.1:n.3000_3006dup, NR_038897.1:n.2999_3006dup, NR_038897.1:n.2998_3006dup, NR_038897.1:n.2997_3006dup, NR_038897.1:n.2996_3006dup, NR_038897.1:n.2995_3006dup, NR_038897.1:n.2994_3006dup, NR_038897.1:n.2993_3006dup, NR_038897.1:n.2992_3006dup, NR_038897.1:n.3006_3007insAAAAAAAAAAAAAAAAAAAAAAA

Select item 14892545362.

rs1489254536 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:174327511 (GRCh38)
2:175192239 (GRCh37)
Canonical SPDI:: NC_000002.12:174327510:A:G
Gene:: LINC01305 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.174327511A>G, NC_000002.11:g.175192239A>G

Select item 14891328023.

rs1489132802 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:174327778 (GRCh38)
2:175192506 (GRCh37)
Canonical SPDI:: NC_000002.12:174327777:G:A
Gene:: LINC01305 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000002.12:g.174327778G>A, NC_000002.11:g.175192506G>A

Select item 14889487994.

rs1488948799 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:174328471 (GRCh38)
2:175193199 (GRCh37)
Canonical SPDI:: NC_000002.12:174328470:G:A
Gene:: LINC01305 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.174328471G>A, NC_000002.11:g.175193199G>A, NR_038897.1:n.1399G>A

Select item 14889264585.

rs1488926458 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:174328001 (GRCh38)
2:175192729 (GRCh37)
Canonical SPDI:: NC_000002.12:174328000:C:A
Gene:: LINC01305 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000076/20 (TOPMED)
HGVS:: NC_000002.12:g.174328001C>A, NC_000002.11:g.175192729C>A

Select item 14886188086.

rs1488618808 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:174328862 (GRCh38)
2:175193590 (GRCh37)
Canonical SPDI:: NC_000002.12:174328861:G:C
Gene:: LINC01305 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.174328862G>C, NC_000002.11:g.175193590G>C

Select item 14876726197.

rs1487672619 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:174328741 (GRCh38)
2:175193469 (GRCh37)
Canonical SPDI:: NC_000002.12:174328740:C:T
Gene:: LINC01305 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.174328741C>T, NC_000002.11:g.175193469C>T, NR_038897.1:n.1669C>T

Select item 14873023898.

rs1487302389 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:174324359 (GRCh38)
2:175189087 (GRCh37)
Canonical SPDI:: NC_000002.12:174324358:A:G
Gene:: LINC01305 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.174324359A>G, NC_000002.11:g.175189087A>G

Select item 14864513799.

rs1486451379 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 2:174326683 (GRCh38)
2:175191411 (GRCh37)
Canonical SPDI:: NC_000002.12:174326682:C:A,NC_000002.12:174326682:C:T
Gene:: LINC01305 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.174326683C>A, NC_000002.12:g.174326683C>T, NC_000002.11:g.175191411C>A, NC_000002.11:g.175191411C>T, NR_038897.1:n.657C>A, NR_038897.1:n.657C>T

Select item 148636782610.

rs1486367826 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 2:174327028 (GRCh38)
2:175191756 (GRCh37)
Canonical SPDI:: NC_000002.12:174327027:C:A,NC_000002.12:174327027:C:G,NC_000002.12:174327027:C:T
Gene:: LINC01305 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
T=0.00034/1 (KOREAN)
HGVS:: NC_000002.12:g.174327028C>A, NC_000002.12:g.174327028C>G, NC_000002.12:g.174327028C>T, NC_000002.11:g.175191756C>A, NC_000002.11:g.175191756C>G, NC_000002.11:g.175191756C>T, NR_038897.1:n.1002C>A, NR_038897.1:n.1002C>G, NR_038897.1:n.1002C>T

Select item 148633095611.

rs1486330956 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:174329991 (GRCh38)
2:175194719 (GRCh37)
Canonical SPDI:: NC_000002.12:174329990:C:T
Gene:: LINC01305 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.174329991C>T, NC_000002.11:g.175194719C>T, NR_038897.1:n.2471C>T

Select item 148630132212.

rs1486301322 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:174330909 (GRCh38)
2:175195637 (GRCh37)
Canonical SPDI:: NC_000002.12:174330908:T:G
Gene:: LINC01305 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.174330909T>G, NC_000002.11:g.175195637T>G

Select item 148587378413.

rs1485873784 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:174326115 (GRCh38)
2:175190843 (GRCh37)
Canonical SPDI:: NC_000002.12:174326114:T:C
Gene:: LINC01305 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.174326115T>C, NC_000002.11:g.175190843T>C, NR_038897.1:n.89T>C

Select item 148586240814.

rs1485862408 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 2:174325922 (GRCh38)
2:175190650 (GRCh37)
Canonical SPDI:: NC_000002.12:174325921:CC:C
Gene:: LINC01305 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.174325923del, NC_000002.11:g.175190651del

Select item 148354060515.

rs1483540605 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:174324150 (GRCh38)
2:175188878 (GRCh37)
Canonical SPDI:: NC_000002.12:174324149:A:G
Gene:: LINC01305 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.174324150A>G, NC_000002.11:g.175188878A>G

Select item 148335101916.

rs1483351019 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GA [Show Flanks]
Chromosome:: 2:174330524 (GRCh38)
2:175195253 (GRCh37)
Canonical SPDI:: NC_000002.12:174330524:A:AGA
Gene:: LINC01305 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGA=0.000084/1 (ALFA)
AG=0.000004/1 (TOPMED)
AG=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.174330525_174330526insGA, NC_000002.11:g.175195253_175195254insGA, NR_038897.1:n.3005_3006insGA

Select item 148307528017.

rs1483075280 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:174328945 (GRCh38)
2:175193673 (GRCh37)
Canonical SPDI:: NC_000002.12:174328944:C:T
Gene:: LINC01305 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.174328945C>T, NC_000002.11:g.175193673C>T

Select item 148304580318.

rs1483045803 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:174330121 (GRCh38)
2:175194849 (GRCh37)
Canonical SPDI:: NC_000002.12:174330120:G:A
Gene:: LINC01305 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000036/5 (GnomAD)
HGVS:: NC_000002.12:g.174330121G>A, NC_000002.11:g.175194849G>A, NR_038897.1:n.2601G>A

Select item 148260369419.

rs1482603694 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:174324165 (GRCh38)
2:175188893 (GRCh37)
Canonical SPDI:: NC_000002.12:174324164:C:T
Gene:: LINC01305 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.174324165C>T, NC_000002.11:g.175188893C>T

Select item 148239907820.

rs1482399078 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:174326332 (GRCh38)
2:175191060 (GRCh37)
Canonical SPDI:: NC_000002.12:174326331:C:A
Gene:: LINC01305 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.174326332C>A, NC_000002.11:g.175191060C>A, NR_038897.1:n.306C>A

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