SNP Links for Gene (Select 283876) - SNP

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Select item 14905761521.

rs1490576152 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 16:3265895 (GRCh38)
16:3315895 (GRCh37)
Canonical SPDI:: NC_000016.10:3265894:CCCC:CCC
Gene:: LINC00921 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.3265898del, NC_000016.9:g.3315898del

Select item 14904769782.

rs1490476978 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:3263382 (GRCh38)
16:3313382 (GRCh37)
Canonical SPDI:: NC_000016.10:3263381:G:T
Gene:: LINC00921 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.0002/3 (ALFA)
T=0.00045/2 (Estonian)
HGVS:: NC_000016.10:g.3263382G>T, NC_000016.9:g.3313382G>T

Select item 14902673523.

rs1490267352 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:3265252 (GRCh38)
16:3315252 (GRCh37)
Canonical SPDI:: NC_000016.10:3265251:G:A
Gene:: LINC00921 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3265252G>A, NC_000016.9:g.3315252G>A, NR_033904.1:n.1485G>A

Select item 14902163754.

rs1490216375 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:3264593 (GRCh38)
16:3314593 (GRCh37)
Canonical SPDI:: NC_000016.10:3264592:C:G,NC_000016.10:3264592:C:T
Gene:: LINC00921 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000016.10:g.3264593C>G, NC_000016.10:g.3264593C>T, NC_000016.9:g.3314593C>G, NC_000016.9:g.3314593C>T, NR_033904.1:n.826C>G, NR_033904.1:n.826C>T

Select item 14899875485.

rs1489987548 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>-,AA [Show Flanks]
Chromosome:: 16:3262492 (GRCh38)
16:3312492 (GRCh37)
Canonical SPDI:: NC_000016.10:3262491:AAAAAAA:AAAAAA,NC_000016.10:3262491:AAAAAAA:AAAAAAAA
Gene:: LINC00921 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0.000071/1 (ALFA)
-=0.000019/5 (TOPMED)
-=0.000022/3 (GnomAD)
HGVS:: NC_000016.10:g.3262498del, NC_000016.10:g.3262498dup, NC_000016.9:g.3312498del, NC_000016.9:g.3312498dup

Select item 14899712186.

rs1489971218 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:3264336 (GRCh38)
16:3314336 (GRCh37)
Canonical SPDI:: NC_000016.10:3264335:G:A
Gene:: LINC00921 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.3264336G>A, NC_000016.9:g.3314336G>A, NR_033904.1:n.569G>A

Select item 14894386797.

rs1489438679 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:3267476 (GRCh38)
16:3317476 (GRCh37)
Canonical SPDI:: NC_000016.10:3267475:G:A
Gene:: LINC00921 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.3267476G>A, NC_000016.9:g.3317476G>A, NR_033904.1:n.2352G>A

Select item 14894295048.

rs1489429504 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:3266521 (GRCh38)
16:3316521 (GRCh37)
Canonical SPDI:: NC_000016.10:3266520:C:G
Gene:: LINC00921 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.3266521C>G, NC_000016.9:g.3316521C>G

Select item 14891923949.

rs1489192394 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>G
Chromosome:: no mapping
Canonical SPDI:

Select item 148916279110.

rs1489162791 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>- [Show Flanks]
Chromosome:: 16:3266702 (GRCh38)
16:3316702 (GRCh37)
Canonical SPDI:: NC_000016.10:3266700:TTT:T
Gene:: LINC00921 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3266702_3266703del, NC_000016.9:g.3316702_3316703del

Select item 148863532011.

rs1488635320 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:3261983 (GRCh38)
16:3311983 (GRCh37)
Canonical SPDI:: NC_000016.10:3261982:G:C
Gene:: LINC00921 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.3261983G>C, NC_000016.9:g.3311983G>C

Select item 148821633312.

rs1488216333 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:3264213 (GRCh38)
16:3314213 (GRCh37)
Canonical SPDI:: NC_000016.10:3264212:G:T
Gene:: LINC00921 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.3264213G>T, NC_000016.9:g.3314213G>T, NR_033904.1:n.446G>T

Select item 148775207213.

rs1487752072 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:3263650 (GRCh38)
16:3313650 (GRCh37)
Canonical SPDI:: NC_000016.10:3263649:A:C
Gene:: LINC00921 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.00008/1 (ALFA)
HGVS:: NC_000016.10:g.3263650A>C, NC_000016.9:g.3313650A>C

Select item 148769722614.

rs1487697226 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:3266062 (GRCh38)
16:3316062 (GRCh37)
Canonical SPDI:: NC_000016.10:3266061:A:G
Gene:: LINC00921 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.3266062A>G, NC_000016.9:g.3316062A>G

Select item 148740234715.

rs1487402347 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:3267139 (GRCh38)
16:3317139 (GRCh37)
Canonical SPDI:: NC_000016.10:3267138:G:A
Gene:: LINC00921 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000016.10:g.3267139G>A, NC_000016.9:g.3317139G>A, NR_033904.1:n.2015G>A

Select item 148671012816.

rs1486710128 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 16:3263499 (GRCh38)
16:3313500 (GRCh37)
Canonical SPDI:: NC_000016.10:3263499:T:TT
Gene:: LINC00921 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.3263500dup, NC_000016.9:g.3313500dup

Select item 148651910417.

rs1486519104 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 16:3265450 (GRCh38)
16:3315450 (GRCh37)
Canonical SPDI:: NC_000016.10:3265449:C:A,NC_000016.10:3265449:C:G
Gene:: LINC00921 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000016.10:g.3265450C>A, NC_000016.10:g.3265450C>G, NC_000016.9:g.3315450C>A, NC_000016.9:g.3315450C>G, NR_033904.1:n.1683C>A, NR_033904.1:n.1683C>G

Select item 148630735018.

rs1486307350 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:3263060 (GRCh38)
16:3313060 (GRCh37)
Canonical SPDI:: NC_000016.10:3263059:T:A
Gene:: LINC00921 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.3263060T>A, NC_000016.9:g.3313060T>A

Select item 148624077219.

rs1486240772 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:3262836 (GRCh38)
16:3312836 (GRCh37)
Canonical SPDI:: NC_000016.10:3262835:C:G,NC_000016.10:3262835:C:T
Gene:: LINC00921 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000016.10:g.3262836C>G, NC_000016.10:g.3262836C>T, NC_000016.9:g.3312836C>G, NC_000016.9:g.3312836C>T

Select item 148586102520.

rs1485861025 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:3264758 (GRCh38)
16:3314758 (GRCh37)
Canonical SPDI:: NC_000016.10:3264757:C:A,NC_000016.10:3264757:C:T
Gene:: LINC00921 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000016.10:g.3264758C>A, NC_000016.10:g.3264758C>T, NC_000016.9:g.3314758C>A, NC_000016.9:g.3314758C>T, NR_033904.1:n.991C>A, NR_033904.1:n.991C>T

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