SNP Links for Gene (Select 283796) - SNP

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Select item 14914661011.

rs1491466101 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AT [Show Flanks]
Chromosome:: 15:22612812 (GRCh38)
15:23260282 (GRCh37)
Canonical SPDI:: NC_000015.10:22612812:AT:ATAT
Gene:: GOLGA8IP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ATAT=0./0 (ALFA)
AT=0.000176/24 (GnomAD)
HGVS:: NC_000015.10:g.22612813_22612814dup, NC_000015.9:g.23260282_23260283dup, NW_021160017.1:g.3507170_3507171dup, NT_187604.1:g.257145_257146dup

Select item 14914143172.

rs1491414317 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 15:22612784 (GRCh38)
15:23260311 (GRCh37)
Canonical SPDI:: NC_000015.10:22612783:TA:
Gene:: GOLGA8IP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00396/47 (ALFA)
-=0.00138/23 (TOMMO)
-=0.0053/8 (Korea1K)
HGVS:: NC_000015.10:g.22612784_22612785del, NC_000015.9:g.23260311_23260312del, NT_187604.1:g.257121dup, NT_187604.1:g.257120del

Select item 14913076663.

rs1491307666 has merged into rs60873077 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACACACA>-,CACA,CACACA,CACACACA,CACACACACA,CACACACACACA,CACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA,CACACACACACACACACACACA,CACACACACACACACACACACACA,CACACACACACACACACACACACACA,CACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACA [Show Flanks]
Chromosome:: 15:22612798 (GRCh38)
15:23260296 (GRCh37)
Canonical SPDI:: NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACA,NC_000015.10:22612784:ACACACACACACACACACACACACACACA:ACACACACACACACACACACACACACACACACACACACACACACACA
Gene:: GOLGA8IP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACACACACACA=0./0 (ALFA)
HGVS:: NC_000015.10:g.22612786CA[6], NC_000015.10:g.22612786CA[8], NC_000015.10:g.22612786CA[9], NC_000015.10:g.22612786CA[10], NC_000015.10:g.22612786CA[11], NC_000015.10:g.22612786CA[12], NC_000015.10:g.22612786CA[13], NC_000015.10:g.22612786CA[15], NC_000015.10:g.22612786CA[16], NC_000015.10:g.22612786CA[17], NC_000015.10:g.22612786CA[18], NC_000015.10:g.22612786CA[19], NC_000015.10:g.22612786CA[20], NC_000015.10:g.22612786CA[21], NC_000015.10:g.22612786CA[22], NC_000015.10:g.22612786CA[23], NC_000015.9:g.23260284GT[6], NC_000015.9:g.23260284GT[8], NC_000015.9:g.23260284GT[9], NC_000015.9:g.23260284GT[10], NC_000015.9:g.23260284GT[11], NC_000015.9:g.23260284GT[12], NC_000015.9:g.23260284GT[13], NC_000015.9:g.23260284GT[15], NC_000015.9:g.23260284GT[16], NC_000015.9:g.23260284GT[17], NC_000015.9:g.23260284GT[18], NC_000015.9:g.23260284GT[19], NC_000015.9:g.23260284GT[20], NC_000015.9:g.23260284GT[21], NC_000015.9:g.23260284GT[22], NC_000015.9:g.23260284GT[23], NW_021160017.1:g.3507133CA[11], NW_021160017.1:g.3507133CA[13], NW_021160017.1:g.3507133CA[14], NW_021160017.1:g.3507133CA[15], NW_021160017.1:g.3507133CA[16], NW_021160017.1:g.3507133CA[17], NW_021160017.1:g.3507133CA[18], NW_021160017.1:g.3507133CA[20], NW_021160017.1:g.3507133CA[21], NW_021160017.1:g.3507133CA[22], NW_021160017.1:g.3507133CA[23], NW_021160017.1:g.3507133CA[24], NW_021160017.1:g.3507133CA[25], NW_021160017.1:g.3507133CA[26], NW_021160017.1:g.3507133CA[27], NW_021160017.1:g.3507133CA[28], NT_187604.1:g.257122CA[14], NT_187604.1:g.257122CA[6], NT_187604.1:g.257122CA[8], NT_187604.1:g.257122CA[9], NT_187604.1:g.257122CA[10], NT_187604.1:g.257122CA[11], NT_187604.1:g.257122CA[13], NT_187604.1:g.257122CA[15], NT_187604.1:g.257122CA[16], NT_187604.1:g.257122CA[17], NT_187604.1:g.257122CA[18], NT_187604.1:g.257122CA[19], NT_187604.1:g.257122CA[20], NT_187604.1:g.257122CA[21], NT_187604.1:g.257122CA[22], NT_187604.1:g.257122CA[23]

Select item 14911904444.

rs1491190444 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 15:22619251 (GRCh38)
15:23253844 (GRCh37)
Canonical SPDI:: NC_000015.10:22619250:AT:
Gene:: GOLGA8IP (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00003/2 (GnomAD)
-=0.00004/1 (TOMMO)
-=0.00332/6 (Korea1K)
HGVS:: NC_000015.10:g.22619251_22619252del, NC_000015.9:g.23253844_23253845del, NW_021160017.1:g.3513604_3513605del

Select item 14910110575.

rs1491011057 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 15:22612813 (GRCh38)
15:23260282 (GRCh37)
Canonical SPDI:: NC_000015.10:22612812:AT:
Gene:: GOLGA8IP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000147/20 (GnomAD)
-=0.000248/4 (TOMMO)
HGVS:: NC_000015.10:g.22612813_22612814del, NC_000015.9:g.23260282_23260283del, NW_021160017.1:g.3507170_3507171del, NT_187604.1:g.257145_257146del

Select item 14908604156.

rs1490860415 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:22613125 (GRCh38)
15:23259971 (GRCh37)
Canonical SPDI:: NC_000015.10:22613124:C:T
Gene:: GOLGA8IP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.22613125C>T, NC_000015.9:g.23259971G>A, NW_021160017.1:g.3507482C>T, NT_187604.1:g.257457C>T

Select item 14905089657.

rs1490508965 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:22615324 (GRCh38)
15:23257772 (GRCh37)
Canonical SPDI:: NC_000015.10:22615323:C:G
Gene:: GOLGA8IP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.22615324C>G, NC_000015.9:g.23257772G>C, NW_021160017.1:g.3509677C>G, NT_187604.1:g.259656C>G

Select item 14904374278.

rs1490437427 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:22613963 (GRCh38)
15:23259133 (GRCh37)
Canonical SPDI:: NC_000015.10:22613962:A:C
Gene:: GOLGA8IP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.00003/4 (GnomAD)
HGVS:: NC_000015.10:g.22613963A>C, NC_000015.9:g.23259133T>G, NW_021160017.1:g.3508320A>C, NT_187604.1:g.258295A>C

Select item 14903701919.

rs1490370191 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:22612060 (GRCh38)
15:23261036 (GRCh37)
Canonical SPDI:: NC_000015.10:22612059:T:C
Gene:: GOLGA8IP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.000279/39 (GnomAD)
C=0.001405/9 (1000Genomes)
G=0.004296/72 (TOMMO)
HGVS:: NC_000015.10:g.22612060T>C, NC_000015.9:g.23261036A>G, NW_021160017.1:g.3506407T>C, NT_187604.1:g.256396T>C, NR_024074.2:n.1010A>G, NR_024074.1:n.1010A>G, NM_173613.1:c.468A>G

Select item 149029856610.

rs1490298566 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 15:22612365 (GRCh38)
15:23260731 (GRCh37)
Canonical SPDI:: NC_000015.10:22612364:A:C,NC_000015.10:22612364:A:G
Gene:: GOLGA8IP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00004/1 (TOMMO)
HGVS:: NC_000015.10:g.22612365A>C, NC_000015.10:g.22612365A>G, NC_000015.9:g.23260731T>G, NC_000015.9:g.23260731T>C, NW_021160017.1:g.3506712A>C, NW_021160017.1:g.3506712A>G, NT_187604.1:g.256701A>C, NT_187604.1:g.256701A>G

Select item 149014700011.

rs1490147000 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 15:22613185 (GRCh38)
15:23259911 (GRCh37)
Canonical SPDI:: NC_000015.10:22613184:T:C,NC_000015.10:22613184:T:G
Gene:: GOLGA8IP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000021/3 (GnomAD_exomes)
C=0.000179/3 (TOMMO)
HGVS:: NC_000015.10:g.22613185T>C, NC_000015.10:g.22613185T>G, NC_000015.9:g.23259911A>G, NC_000015.9:g.23259911A>C, NW_021160017.1:g.3507542T>C, NW_021160017.1:g.3507542T>G, NT_187604.1:g.257517T>C, NT_187604.1:g.257517T>G, NR_024074.2:n.880A>G, NR_024074.2:n.880A>C, NR_024074.1:n.880A>G, NR_024074.1:n.880A>C, NM_173613.1:c.338A>G, NM_173613.1:c.338A>C

Select item 149001916912.

rs1490019169 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:22616121 (GRCh38)
15:23256975 (GRCh37)
Canonical SPDI:: NC_000015.10:22616120:A:T
Gene:: GOLGA8IP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.00135/16 (ALFA)
HGVS:: NC_000015.10:g.22616121A>T, NC_000015.9:g.23256975T>A, NW_021160017.1:g.3510474A>T, NT_187604.1:g.260453A>T

Select item 148993514313.

rs1489935143 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 15:22611780 (GRCh38)
15:23261316 (GRCh37)
Canonical SPDI:: NC_000015.10:22611779:A:C,NC_000015.10:22611779:A:G
Gene:: GOLGA8IP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.22611780A>C, NC_000015.10:g.22611780A>G, NC_000015.9:g.23261316T>G, NC_000015.9:g.23261316T>C, NW_021160017.1:g.3506127A>C, NW_021160017.1:g.3506127A>G, NT_187604.1:g.256116A>C, NT_187604.1:g.256116A>G, NR_024074.2:n.1095T>G, NR_024074.2:n.1095T>C, NR_024074.1:n.1095T>G, NR_024074.1:n.1095T>C, NM_173613.1:c.553T>G, NM_173613.1:c.553T>C

Select item 148990993814.

rs1489909938 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:22610806 (GRCh38)
15:23262290 (GRCh37)
Canonical SPDI:: NC_000015.10:22610805:T:C
Gene:: GOLGA8IP (Varview), LOC101927846 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
C=0.000029/4 (GnomAD)
C=0.00003/8 (TOPMED)
HGVS:: NC_000015.10:g.22610806T>C, NC_000015.9:g.23262290A>G, NW_021160017.1:g.3505145T>C, NT_187604.1:g.255142T>C, NR_024074.2:n.1446A>G, NR_024074.1:n.1446A>G, NM_173613.1:c.904A>G

Select item 148980812215.

rs1489808122 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 15:22612023 (GRCh38)
15:23261071 (GRCh37)
Canonical SPDI:: NC_000015.10:22612022:CCC:CC
Gene:: GOLGA8IP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
HGVS:: NC_000015.10:g.22612025del, NC_000015.9:g.23261073del, NW_021160017.1:g.3506372del, NT_187604.1:g.256361del, NR_024074.2:n.1047del, NR_024074.1:n.1047del, NM_173613.1:c.505del

Select item 148967368316.

rs1489673683 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:22610753 (GRCh38)
15:23262343 (GRCh37)
Canonical SPDI:: NC_000015.10:22610752:C:G,NC_000015.10:22610752:C:T
Gene:: GOLGA8IP (Varview), LOC101927846 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000013/3 (GnomAD_exomes)
HGVS:: NC_000015.10:g.22610753C>G, NC_000015.10:g.22610753C>T, NC_000015.9:g.23262343G>C, NC_000015.9:g.23262343G>A, NW_021160017.1:g.3505092C>G, NW_021160017.1:g.3505092C>T, NT_187604.1:g.255089C>G, NT_187604.1:g.255089C>T, NR_024074.2:n.1499G>C, NR_024074.2:n.1499G>A, NR_024074.1:n.1499G>C, NR_024074.1:n.1499G>A, NM_173613.1:c.957G>C, NM_173613.1:c.957G>A

Select item 148937100717.

rs1489371007 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:22617765 (GRCh38)
15:23255331 (GRCh37)
Canonical SPDI:: NC_000015.10:22617764:G:C
Gene:: GOLGA8IP (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.22617765G>C, NC_000015.9:g.23255331C>G, NW_021160017.1:g.3512118G>C, NT_187604.1:g.262097G>C, NR_024074.2:n.90C>G, NR_024074.1:n.90C>G, NM_173613.1:c.-453C>G

Select item 148925716518.

rs1489257165 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:22617026 (GRCh38)
15:23256070 (GRCh37)
Canonical SPDI:: NC_000015.10:22617025:C:G,NC_000015.10:22617025:C:T
Gene:: GOLGA8IP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.22617026C>G, NC_000015.10:g.22617026C>T, NC_000015.9:g.23256070G>C, NC_000015.9:g.23256070G>A, NW_021160017.1:g.3511379C>G, NW_021160017.1:g.3511379C>T, NT_187604.1:g.261358C>G, NT_187604.1:g.261358C>T

Select item 148921445819.

rs1489214458 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:22615200 (GRCh38)
15:23257896 (GRCh37)
Canonical SPDI:: NC_000015.10:22615199:C:G,NC_000015.10:22615199:C:T
Gene:: GOLGA8IP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000054/1 (ALFA)
G=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.22615200C>G, NC_000015.10:g.22615200C>T, NC_000015.9:g.23257896G>C, NC_000015.9:g.23257896G>A, NW_021160017.1:g.3509553C>G, NW_021160017.1:g.3509553C>T, NT_187604.1:g.259532C>G, NT_187604.1:g.259532C>T

Select item 148916424220.

rs1489164242 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:22613845 (GRCh38)
15:23259251 (GRCh37)
Canonical SPDI:: NC_000015.10:22613844:G:A
Gene:: GOLGA8IP (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.22613845G>A, NC_000015.9:g.23259251C>T, NW_021160017.1:g.3508202G>A, NT_187604.1:g.258177G>A

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