SNP Links for Gene (Select 283553) - SNP

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Select item 14913391331.

rs1491339133 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TG [Show Flanks]
Chromosome:: 14:51358595 (GRCh38)
14:51825314 (GRCh37)
Canonical SPDI:: NC_000014.9:51358595:G:GTG
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTG=0./0 (ALFA)
GT=0.00006/3 (GnomAD)
GT=0.00007/2 (TOMMO)
HGVS:: NC_000014.9:g.51358596_51358597insTG, NC_000014.8:g.51825314_51825315insTG

Select item 14912905972.

rs1491290597 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATGTGTGTGTGTGT [Show Flanks]
Chromosome:: 14:51365695 (GRCh38)
14:51832414 (GRCh37)
Canonical SPDI:: NC_000014.9:51365695:TGTGTGTGTGTGT:TGTGTGTGTGTGTATGTGTGTGTGTGT
Gene:: LINC00640 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TGTGTGTGTGTGTATGTGTGTGTGTGT=0./0 (ALFA)
TGTGTGTGTGTGTA=0.000009/1 (GnomAD)
HGVS:: NC_000014.9:g.51365696_51365708TG[6]TATGTGTGTGTGTGT[1], NC_000014.8:g.51832414_51832426TG[6]TATGTGTGTGTGTGT[1]

Select item 14912631633.

rs1491263163 has merged into rs11335873 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAA>-,A,AA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 14:51356917 (GRCh38)
14:51823635 (GRCh37)
Canonical SPDI:: NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:51356906:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
-=0.1356/679 (1000Genomes)
HGVS:: NC_000014.9:g.51356917_51356929del, NC_000014.9:g.51356918_51356929del, NC_000014.9:g.51356919_51356929del, NC_000014.9:g.51356924_51356929del, NC_000014.9:g.51356925_51356929del, NC_000014.9:g.51356926_51356929del, NC_000014.9:g.51356927_51356929del, NC_000014.9:g.51356928_51356929del, NC_000014.9:g.51356929del, NC_000014.9:g.51356929dup, NC_000014.9:g.51356928_51356929dup, NC_000014.9:g.51356927_51356929dup, NC_000014.9:g.51356926_51356929dup, NC_000014.9:g.51356925_51356929dup, NC_000014.9:g.51356924_51356929dup, NC_000014.9:g.51356923_51356929dup, NC_000014.9:g.51356922_51356929dup, NC_000014.9:g.51356917_51356929dup, NC_000014.8:g.51823635_51823647del, NC_000014.8:g.51823636_51823647del, NC_000014.8:g.51823637_51823647del, NC_000014.8:g.51823642_51823647del, NC_000014.8:g.51823643_51823647del, NC_000014.8:g.51823644_51823647del, NC_000014.8:g.51823645_51823647del, NC_000014.8:g.51823646_51823647del, NC_000014.8:g.51823647del, NC_000014.8:g.51823647dup, NC_000014.8:g.51823646_51823647dup, NC_000014.8:g.51823645_51823647dup, NC_000014.8:g.51823644_51823647dup, NC_000014.8:g.51823643_51823647dup, NC_000014.8:g.51823642_51823647dup, NC_000014.8:g.51823641_51823647dup, NC_000014.8:g.51823640_51823647dup, NC_000014.8:g.51823635_51823647dup

Select item 14912058494.

rs1491205849 has merged into rs199998958 [Homo sapiens]

Variant type:: DELINS
Alleles:: CG>- [Show Flanks]
Chromosome:: 14:51365694 (GRCh38)
14:51832412 (GRCh37)
Canonical SPDI:: NC_000014.9:51365692:GCG:G
Gene:: LINC00640 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.012898/153 (ALFA)
-=0.000958/16 (TOMMO)
-=0.0033/6 (Korea1K)
-=0.017565/2310 (GnomAD)
-=0.020067/12 (NorthernSweden)
-=0.316613/1174 (TWINSUK)
GC=0.376597/1886 (1000Genomes)
HGVS:: NC_000014.9:g.51365694_51365695del, NC_000014.8:g.51832412_51832413del

Select item 14911351695.

rs1491135169 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 14:51356906 (GRCh38)
14:51823624 (GRCh37)
Canonical SPDI:: NC_000014.9:51356905:CA:
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00084/10 (ALFA)
HGVS:: NC_000014.9:g.51356906_51356907del, NC_000014.8:g.51823624_51823625del

Select item 14910526316.

rs1491052631 [Homo sapiens]

Variant type:: DELINS
Alleles:: CG>- [Show Flanks]
Chromosome:: 14:51365690 (GRCh38)
14:51832408 (GRCh37)
Canonical SPDI:: NC_000014.9:51365688:GCG:G
Gene:: LINC00640 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.00228/27 (ALFA)
-=0.01444/1186 (GnomAD)
HGVS:: NC_000014.9:g.51365690_51365691del, NC_000014.8:g.51832408_51832409del

Select item 14910125497.

rs1491012549 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 14:51352544 (GRCh38)
14:51819262 (GRCh37)
Canonical SPDI:: NC_000014.9:51352542:ACA:A
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.00008/1 (ALFA)
HGVS:: NC_000014.9:g.51352544_51352545del, NC_000014.8:g.51819262_51819263del

Select item 14907693388.

rs1490769338 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:51336707 (GRCh38)
14:51803425 (GRCh37)
Canonical SPDI:: NC_000014.9:51336706:T:C
Gene:: LINC00640 (Varview), LOC124900595 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000014.9:g.51336707T>C, NC_000014.8:g.51803425T>C

Select item 14907536159.

rs1490753615 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 14:51353222 (GRCh38)
14:51819940 (GRCh37)
Canonical SPDI:: NC_000014.9:51353221:G:A,NC_000014.9:51353221:G:C
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
A=0.000022/3 (GnomAD)
HGVS:: NC_000014.9:g.51353222G>A, NC_000014.9:g.51353222G>C, NC_000014.8:g.51819940G>A, NC_000014.8:g.51819940G>C

Select item 149060720910.

rs1490607209 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:51337308 (GRCh38)
14:51804026 (GRCh37)
Canonical SPDI:: NC_000014.9:51337307:A:G
Gene:: LINC00640 (Varview), LOC124900595 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.51337308A>G, NC_000014.8:g.51804026A>G

Select item 149048948411.

rs1490489484 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGTAAGGGCTCAATACAGCTAT>- [Show Flanks]
Chromosome:: 14:51360142 (GRCh38)
14:51826860 (GRCh37)
Canonical SPDI:: NC_000014.9:51360138:TATAGTAAGGGCTCAATACAGCTAT:TAT
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.51360142_51360163del, NC_000014.8:g.51826860_51826881del

Select item 149041144012.

rs1490411440 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:51364422 (GRCh38)
14:51831140 (GRCh37)
Canonical SPDI:: NC_000014.9:51364421:A:G
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000014.9:g.51364422A>G, NC_000014.8:g.51831140A>G

Select item 149033676713.

rs1490336767 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 14:51359418 (GRCh38)
14:51826136 (GRCh37)
Canonical SPDI:: NC_000014.9:51359417:A:T
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000322/5 (ALFA)
T=0.000228/32 (GnomAD)
T=0.001116/5 (Estonian)
HGVS:: NC_000014.9:g.51359418A>T, NC_000014.8:g.51826136A>T

Select item 149031136114.

rs1490311361 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:51356900 (GRCh38)
14:51823618 (GRCh37)
Canonical SPDI:: NC_000014.9:51356899:C:T
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000018/2 (GnomAD)
HGVS:: NC_000014.9:g.51356900C>T, NC_000014.8:g.51823618C>T

Select item 149028005515.

rs1490280055 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 14:51336219 (GRCh38)
14:51802937 (GRCh37)
Canonical SPDI:: NC_000014.9:51336218:T:A
Gene:: LINC00640 (Varview), LOC124900595 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000014.9:g.51336219T>A, NC_000014.8:g.51802937T>A

Select item 149014973416.

rs1490149734 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 14:51359035 (GRCh38)
14:51825753 (GRCh37)
Canonical SPDI:: NC_000014.9:51359034:T:A
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.51359035T>A, NC_000014.8:g.51825753T>A

Select item 149014006117.

rs1490140061 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACTT>- [Show Flanks]
Chromosome:: 14:51360177 (GRCh38)
14:51826895 (GRCh37)
Canonical SPDI:: NC_000014.9:51360173:CTTACTT:CTT
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.51360177_51360180del, NC_000014.8:g.51826895_51826898del

Select item 149002836418.

rs1490028364 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 14:51331880 (GRCh38)
14:51798598 (GRCh37)
Canonical SPDI:: NC_000014.9:51331879:C:A
Gene:: LINC00640 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000014.9:g.51331880C>A, NC_000014.8:g.51798598C>A

Select item 148998520219.

rs1489985202 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:51359652 (GRCh38)
14:51826370 (GRCh37)
Canonical SPDI:: NC_000014.9:51359651:C:T
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.51359652C>T, NC_000014.8:g.51826370C>T

Select item 148982246320.

rs1489822463 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 14:51355745 (GRCh38)
14:51822463 (GRCh37)
Canonical SPDI:: NC_000014.9:51355744:A:C
Gene:: LINC00640 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.51355745A>C, NC_000014.8:g.51822463A>C

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